##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546086_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 382042 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.15400401003031 28.0 25.0 30.0 16.0 33.0 2 26.148436559331174 30.0 25.0 31.0 10.0 33.0 3 26.507946770250392 30.0 25.0 31.0 16.0 33.0 4 27.983300265415846 32.0 19.0 35.0 10.0 37.0 5 31.322333670120038 33.0 30.0 35.0 19.0 37.0 6 29.930177833850728 33.0 28.0 35.0 17.0 37.0 7 29.789491731275618 32.0 28.0 35.0 17.0 35.0 8 32.48983881353359 33.0 32.0 35.0 28.0 35.0 9 27.180477539118737 31.0 23.0 34.0 10.0 35.0 10 31.96854796069542 35.0 31.0 37.0 18.0 39.0 11 33.92629867920281 35.0 32.0 37.0 27.0 39.0 12 33.26039283638972 35.0 31.0 38.0 25.0 39.0 13 32.93801990357081 35.0 31.0 38.0 22.0 39.0 14 32.59342951822051 35.0 30.0 38.0 21.0 40.0 15 31.87862067521372 34.0 27.0 38.0 18.0 40.0 16 30.58383894964428 33.0 27.0 37.0 17.0 40.0 17 30.302278283539508 32.0 25.0 37.0 17.0 40.0 18 31.414619335046932 34.0 28.0 37.0 18.0 39.0 19 31.022526319095807 34.0 27.0 37.0 18.0 39.0 20 31.43470089676004 34.0 29.0 36.0 19.0 39.0 21 32.42203736761927 34.0 31.0 36.0 23.0 39.0 22 32.76549698724224 34.0 31.0 37.0 25.0 39.0 23 34.19852005800409 35.0 33.0 38.0 29.0 39.0 24 33.884274503850364 35.0 33.0 38.0 27.0 40.0 25 32.66500280073919 35.0 31.0 37.0 23.0 39.0 26 26.31175891655891 33.0 21.0 35.0 0.0 38.0 27 29.51754780887965 34.0 24.0 36.0 12.0 39.0 28 30.98898288669832 34.0 27.0 36.0 18.0 39.0 29 32.30641657199994 34.0 30.0 37.0 23.0 39.0 30 31.996123462865338 34.0 30.0 37.0 21.0 39.0 31 30.952520927018494 34.0 29.0 36.0 18.0 38.0 32 30.97589270289654 34.0 29.0 36.0 18.0 39.0 33 30.60178723805236 33.0 29.0 36.0 16.0 38.0 34 30.599206369980266 34.0 29.0 37.0 15.0 39.0 35 29.725090435083054 33.0 27.0 36.0 10.0 39.0 36 29.34598551991666 33.0 25.0 36.0 10.0 39.0 37 29.391135006098807 33.0 25.0 36.0 10.0 39.0 38 29.214154464692363 33.0 26.0 36.0 10.0 38.0 39 29.122873924856428 33.0 25.0 36.0 9.0 39.0 40 29.03227132095424 33.0 25.0 36.0 10.0 38.0 41 28.54602635312348 33.0 23.0 35.0 8.0 38.0 42 28.692654210793577 33.0 24.0 35.0 8.0 38.0 43 28.326338465404326 32.0 23.0 35.0 8.0 38.0 44 27.961169190821952 32.0 23.0 35.0 8.0 38.0 45 27.24563267912952 31.0 23.0 34.0 8.0 37.0 46 26.885769103920513 31.0 22.0 34.0 7.0 37.0 47 27.127368195119907 31.0 23.0 34.0 7.0 37.0 48 27.2853403552489 31.0 23.0 34.0 8.0 37.0 49 27.004337219468017 31.0 22.0 34.0 7.0 37.0 50 28.752548149156375 33.0 24.0 35.0 8.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 3.0 11 8.0 12 11.0 13 45.0 14 116.0 15 217.0 16 482.0 17 1008.0 18 1661.0 19 2818.0 20 4225.0 21 5958.0 22 8177.0 23 10950.0 24 14052.0 25 17864.0 26 20705.0 27 22633.0 28 24513.0 29 28565.0 30 33462.0 31 38853.0 32 41283.0 33 38601.0 34 31004.0 35 22227.0 36 10585.0 37 1966.0 38 49.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 24.34287329665325 22.938053931243164 26.275383334816592 26.443689437287 2 39.88252600499422 17.547547128326205 29.661136733657557 12.908790133022025 3 28.536391286821868 13.96495673250585 43.754089864465165 13.744562116207119 4 25.96023473858895 23.743462760638884 36.63654781411468 13.659754686657488 5 18.56366577496715 28.107642615209844 39.322639919171195 14.006051690651814 6 17.30856816789777 34.03657189523665 37.99372843823454 10.661131498631041 7 76.81380581192644 3.406955256228373 18.30662597306055 1.4726129587846364 8 79.19024609859649 1.7806942692164736 17.486559069421688 1.5425005627653503 9 68.16868302437952 2.3081231906439603 17.3703414807796 12.152852304196921 10 48.1601499311594 19.9590620926495 23.440092974070915 8.440695002120185 11 43.473754194565 16.54975107448919 28.300029839651135 11.676464891294675 12 37.96336528444517 17.704859675114253 34.05986776323022 10.271907277210358 13 18.46734128708362 37.50268295108914 32.453238125651104 11.576737636176128 14 11.57307311761534 39.686212510666365 36.476617754068926 12.264096617649368 15 9.745001858434414 19.030106637490118 55.89097533779008 15.333916166285382 16 11.187513414755445 12.174315912910098 54.6031588149994 22.035011857335057 17 11.80419953827066 13.189387554247961 37.93954591380005 37.06686699368132 18 17.953523434596196 19.61407384528403 43.43239748509326 19.000005235026514 19 26.69313845074625 20.83619078530633 33.901508211139095 18.56916255280833 20 27.668162139241236 17.93860360902728 33.504431449945294 20.88880280178619 21 19.73369420116113 24.237911015019293 36.49415509289555 19.534239690924036 22 18.255322713209544 19.775050910632864 32.740902832672845 29.228723543484747 23 15.2477999801069 26.959077797729048 33.622219546542006 24.170902675622052 24 15.735966202668816 19.830803943021973 48.588375100119876 15.844854754189331 25 15.634668439595648 19.539212966113674 44.53227655598076 20.293842038309922 26 10.657466980070254 40.704163416587704 29.19024609859649 19.448123504745553 27 12.869003931504913 30.19667994618393 38.16726956722036 18.7670465550908 28 12.007318567068543 23.356594301150135 48.87054302930044 15.765544102480881 29 12.268284638861696 20.829647002162066 46.54959402369373 20.35247433528251 30 16.44217127959753 25.663146983839475 41.199396924945425 16.69528481161757 31 28.59423832981714 22.66112102857801 32.718130467330816 16.026510174274033 32 27.396987765743035 22.73545840509682 33.4520811847912 16.415472644368943 33 25.213719957491588 22.89879123237759 31.965071903089186 19.922416907041633 34 17.3357903057779 23.506577810816612 32.62494699535653 26.53268488804896 35 19.061778547908347 21.927693813769167 35.69476654399254 23.315761094329943 36 30.622811104538243 21.77640154747384 29.55565094937206 18.04513639861586 37 18.38384261416284 30.8172923395857 30.805251778600258 19.9936132676512 38 19.25050125378885 31.683950979211712 27.812125368414993 21.253422398584448 39 19.264374074054686 28.145858308772333 29.558268462629762 23.031499154543216 40 23.09065495416734 22.570293318535658 31.321425393019613 23.017626334277384 41 16.742661801582027 20.806612885494268 32.37104820935918 30.079677103564528 42 21.272006742714154 23.114736076138225 26.324069081409895 29.28918809973772 43 20.761591657461747 22.918684333136145 28.13486475308997 28.184859256312134 44 17.974987043309373 26.620109830856293 32.58673130179404 22.81817182404029 45 17.318514718277047 35.52384292826443 25.670476020961047 21.487166332497473 46 21.308390176996248 29.424775286486827 28.007130106113987 21.25970443040294 47 20.739081043445484 24.700425607655703 28.99969113343559 25.56080221546322 48 20.14412027996922 23.298223755503322 33.262049722281844 23.29560624224562 49 18.747676956983785 24.16331188717471 34.41297030169458 22.676040854146926 50 18.015558498803795 29.958747991058576 31.430052193214358 20.59564131692327 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 148.0 1 226.5 2 305.0 3 3687.5 4 7070.0 5 5731.0 6 4392.0 7 4654.0 8 4916.0 9 5436.5 10 5957.0 11 6252.0 12 6547.0 13 6577.5 14 6608.0 15 6282.0 16 5956.0 17 5517.0 18 5078.0 19 4731.5 20 4385.0 21 4009.0 22 3633.0 23 3354.0 24 3075.0 25 2797.0 26 2519.0 27 2613.5 28 2708.0 29 3099.0 30 3490.0 31 4307.5 32 5125.0 33 5668.0 34 6211.0 35 6957.0 36 7703.0 37 7722.0 38 7741.0 39 10330.0 40 12919.0 41 18333.5 42 23748.0 43 29487.5 44 35227.0 45 35292.5 46 35358.0 47 35149.5 48 34941.0 49 33965.0 50 32989.0 51 30251.5 52 27514.0 53 23973.0 54 20432.0 55 17546.5 56 14661.0 57 13222.0 58 11783.0 59 11111.0 60 10439.0 61 9425.0 62 8411.0 63 7321.0 64 6231.0 65 5465.5 66 4700.0 67 4017.0 68 3334.0 69 2767.0 70 2200.0 71 1919.5 72 1639.0 73 1308.5 74 978.0 75 719.5 76 461.0 77 357.0 78 253.0 79 187.5 80 122.0 81 96.5 82 71.0 83 54.5 84 38.0 85 24.5 86 11.0 87 8.5 88 6.0 89 6.0 90 6.0 91 3.5 92 1.0 93 1.0 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 382042.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.547166545376854 #Duplication Level Percentage of deduplicated Percentage of total 1 84.18311724798409 40.02668696098886 2 6.084824356330344 5.786323141396089 3 2.3004302098563687 3.2813681494217093 4 1.294363144311386 2.4617319997108456 5 0.8348280403840601 1.9846853936445752 6 0.6574371070787886 1.8755562974031554 7 0.47735237573022443 1.5887727036773405 8 0.37284876732193806 1.4182321948875722 9 0.32707996801848516 1.3996553141728307 >10 3.2661676492952068 32.11577112740015 >50 0.18127675929439843 5.416200863482064 >100 0.019678069265510356 1.472351519869254 >500 0.0 0.0 >1k 5.963051292578895E-4 1.172664333945549 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4136 1.0826034833866434 No Hit TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 461 0.12066736118018437 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.034551175001701386 0.0 2 0.0 0.0 0.0 0.14841300171185368 0.0 3 0.0 0.0 0.0 0.21489783845755178 0.0 4 0.0 0.0 0.0 0.30101402463603477 0.0 5 0.0 0.0 0.0 0.4648703545683459 0.0 6 0.0 0.0 0.0 0.6216593987048544 0.0 7 0.0 0.0 0.0 0.7140576167018285 0.0 8 0.0 0.0 0.0 0.9721444239115071 0.0 9 0.0 0.0 0.0 1.1346919972149658 0.0 10 0.0 0.0 0.0 1.3794294868103507 0.0 11 0.0 0.0 0.0 1.5838572722370838 0.0 12 0.0 0.0 0.0 1.8432528360756146 0.0 13 0.0 0.0 0.0 2.1442668607116495 0.0 14 0.0 0.0 0.0 2.3070761853408785 0.0 15 0.0 0.0 0.0 2.3772255406473635 0.0 16 0.0 0.0 0.0 2.449468906560012 0.0 17 0.0 0.0 0.0 2.5539076855424274 0.0 18 0.0 0.0 0.0 2.740536380816769 0.0 19 0.0 0.0 0.0 2.777705069076175 0.0 20 0.0 0.0 0.0 2.8434046518445615 0.0 21 0.0 0.0 0.0 2.892090398437868 0.0 22 0.0 0.0 0.0 2.9452259175692723 0.0 23 0.0 0.0 0.0 3.0035964632160863 0.0 24 0.0 0.0 0.0 3.042859162081656 0.0 25 0.0 0.0 0.0 3.0747928238256526 0.0 26 0.0 0.0 0.0 3.105417728940797 0.0 27 0.0 0.0 0.0 3.151747713602169 0.0 28 0.0 0.0 0.0 3.2035744761047216 0.0 29 0.0 0.0 0.0 3.256709995236126 0.0 30 0.0 0.0 0.0 3.321362572701431 0.0 31 0.0 0.0 0.0 3.3710953245978192 0.0 32 0.0 0.0 0.0 3.4297276215704033 0.0 33 0.0 0.0 0.0 3.502232738808822 0.0 34 0.0 0.0 0.0 3.5948927081315665 0.0 35 0.0 0.0 0.0 3.7066605242355553 0.0 36 0.0 0.0 0.0 3.7652928212081394 0.0 37 0.0 0.0 0.0 3.8252338748095758 0.0 38 0.0 0.0 0.0 3.886745436365635 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTGACG 65 0.0 44.000004 1 CTAGCGG 65 0.0 44.000004 2 GCGAGAA 20 7.8498747E-4 44.0 28 CCTTATG 20 7.8498747E-4 44.0 32 ACAGTCT 25 4.4372435E-5 44.0 24 CTCGTAG 35 1.442695E-7 44.0 1 TTGCTCA 25 4.4372435E-5 44.0 28 CGTTGGC 20 7.8498747E-4 44.0 3 TAGCGGC 20 7.8498747E-4 44.0 3 GGGTACA 20 7.8498747E-4 44.0 7 AAGACGG 30 2.523264E-6 44.0 2 CACGACG 50 2.7284841E-11 44.0 26 TGCGGGT 30 2.523264E-6 44.0 4 AGGCGAT 35 1.442695E-7 44.0 6 GCGTTCG 20 7.8498747E-4 44.0 44 CCCACGT 20 7.8498747E-4 44.0 23 GACCATC 20 7.8498747E-4 44.0 9 ATCCGGG 20 7.8498747E-4 44.0 3 CCGTAGG 35 1.442695E-7 44.0 2 GCACACG 45 4.783942E-10 44.0 24 >>END_MODULE