##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546085_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 809826 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.849156485467248 31.0 28.0 31.0 16.0 33.0 2 28.7527011975412 31.0 28.0 33.0 16.0 33.0 3 28.261105472039674 31.0 27.0 33.0 16.0 34.0 4 32.265865753877996 35.0 32.0 35.0 26.0 37.0 5 33.669775976567806 35.0 33.0 35.0 28.0 37.0 6 33.44522033128104 35.0 33.0 37.0 28.0 37.0 7 34.338015820682465 35.0 35.0 37.0 31.0 37.0 8 34.71295191806635 35.0 35.0 37.0 32.0 37.0 9 36.42987629441386 39.0 37.0 39.0 32.0 39.0 10 36.164715630271196 38.0 35.0 39.0 31.0 39.0 11 36.283336173449605 38.0 35.0 39.0 31.0 39.0 12 35.110200215848835 37.0 34.0 39.0 29.0 39.0 13 35.2368743409078 37.0 34.0 39.0 27.0 39.0 14 35.98556480033982 38.0 34.0 40.0 29.0 41.0 15 36.55061210679825 38.0 35.0 40.0 31.0 41.0 16 36.189060366053944 38.0 34.0 40.0 31.0 41.0 17 35.68160444342365 37.0 34.0 40.0 29.0 41.0 18 35.402882841499284 37.0 34.0 39.0 29.0 40.0 19 34.870785823127434 37.0 33.0 39.0 27.0 40.0 20 35.21043532808282 35.0 34.0 39.0 29.0 40.0 21 35.46612729154164 36.0 34.0 39.0 30.0 40.0 22 35.79596481219423 36.0 34.0 40.0 31.0 41.0 23 36.128814090928174 37.0 35.0 40.0 31.0 41.0 24 35.857838597427104 36.0 35.0 40.0 31.0 41.0 25 35.49088322676723 36.0 34.0 40.0 30.0 41.0 26 35.59315704855117 36.0 34.0 40.0 30.0 41.0 27 35.86593292880199 37.0 35.0 40.0 31.0 41.0 28 35.802031547517615 36.0 35.0 40.0 31.0 41.0 29 35.914022271450904 37.0 35.0 40.0 31.0 41.0 30 35.53638435910924 36.0 35.0 40.0 30.0 41.0 31 34.853988387628945 36.0 34.0 40.0 28.0 41.0 32 34.78516372652891 36.0 34.0 40.0 27.0 41.0 33 34.45824041213792 36.0 34.0 40.0 24.0 41.0 34 34.120569109907564 36.0 34.0 40.0 22.0 41.0 35 33.86172214772062 36.0 33.0 40.0 20.0 41.0 36 33.45517802589692 36.0 33.0 40.0 18.0 41.0 37 33.39124453895034 36.0 33.0 40.0 18.0 41.0 38 33.20721982252978 36.0 33.0 40.0 18.0 41.0 39 33.02850488870449 35.0 33.0 40.0 16.0 40.0 40 32.82867307298111 35.0 32.0 40.0 15.0 40.0 41 32.5298101073564 35.0 32.0 39.0 15.0 40.0 42 32.71380642261424 35.0 32.0 39.0 15.0 40.0 43 32.52388908234608 35.0 32.0 39.0 15.0 40.0 44 32.384864156003886 35.0 32.0 39.0 13.0 40.0 45 32.277757197225085 35.0 31.0 39.0 13.0 40.0 46 32.09268904678289 35.0 31.0 39.0 12.0 40.0 47 32.04514426555828 35.0 31.0 38.0 12.0 40.0 48 32.05615527286108 35.0 31.0 38.0 12.0 40.0 49 32.026136478700366 35.0 31.0 38.0 12.0 40.0 50 32.19053105234952 35.0 31.0 39.0 12.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 4.0 11 6.0 12 8.0 13 24.0 14 45.0 15 90.0 16 220.0 17 471.0 18 973.0 19 1664.0 20 2573.0 21 3788.0 22 5399.0 23 7551.0 24 10857.0 25 16361.0 26 22544.0 27 25657.0 28 24187.0 29 23867.0 30 25761.0 31 31394.0 32 41856.0 33 63363.0 34 98340.0 35 76195.0 36 78691.0 37 106841.0 38 116133.0 39 24961.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.350872903562 22.179455833722304 25.59710357533594 22.872567687379757 2 39.54269188689916 20.33189845719945 27.582591816019736 12.542817839881653 3 29.518686730235878 18.59201853237609 38.889835594312856 12.999459143075178 4 25.533139217560315 24.22162291652775 35.60950130027932 14.635736565632618 5 20.30658437738477 28.27064085371426 36.68034861809821 14.742426150802764 6 18.453099801685795 36.736163077006665 34.40936695043133 10.401370170876213 7 75.22813542662252 5.114061539145446 17.076260826399743 2.5815422078323 8 76.46370948821105 3.859841496815365 16.646415402814927 3.030033612158661 9 72.83404089273499 4.8536352253447035 17.940644039583812 4.371679842336502 10 42.27735340678121 22.29849375050937 23.604453302314322 11.819699540395098 11 37.14983218617333 20.368696485417857 28.70419077678415 13.77728055162467 12 33.65809445485821 19.968116607765126 32.73678543292016 13.637003504456512 13 20.510331849063874 31.758180152279625 33.56128353498159 14.170204463674912 14 15.480732898178125 34.877492202028584 35.16928327813629 14.472491621656996 15 14.922958759042066 22.016210889746688 48.1105817792958 14.950248571915449 16 16.813858779540297 17.37718966790397 47.99191431245725 17.81703724009849 17 16.591341843803484 17.713064287884066 35.687789722730564 30.00780414558189 18 19.95576827614821 21.99237860972604 39.66148283705388 18.390370277071867 19 25.37532753949614 23.508630248967062 32.186790742702755 18.929251468834046 20 26.35726686967324 21.80307868603873 32.31262024187912 19.527034202408913 21 21.76097087522505 25.223319577291914 34.70733219234749 18.308377355135548 22 20.2716385989089 21.57130050158923 32.555264958151504 25.601795941350364 23 18.239103214764654 27.375757261436405 32.5700829560918 21.815056567707135 24 18.082773336494505 23.16695191312702 42.19992936754315 16.550345382835324 25 19.0743443653328 22.22650297718275 39.25423486032802 19.444917797156428 26 16.00170900909578 27.99107462590729 34.16141245156367 21.845803913433258 27 16.527007036079354 28.053680667205054 35.89783484353429 19.5214774531813 28 15.125841847507985 25.377797205819526 42.242654594937676 17.253706351734817 29 16.646168436182588 24.08739655185188 39.74285834240936 19.523576669556174 30 18.37246519622734 26.08770279047598 37.80034229575242 17.739489717544263 31 26.886269396141888 23.617666017144423 31.05531311664481 18.44075147006888 32 26.231931303761545 24.314111920338444 31.56406437926172 17.88989239663829 33 24.682956585735703 23.55975234186109 30.225134782039596 21.53215629036361 34 17.937063023414908 25.366436740731963 32.080224640848776 24.616275595004357 35 19.34674856080195 23.9227932913984 33.845789095435315 22.884669052364334 36 27.461578166173968 24.932886817662066 28.527980084610764 19.0775549315532 37 19.15744863711464 29.450523939710504 30.420855838167704 20.971171585007152 38 20.443527375016362 31.099890593781875 27.437498919520987 21.019083111680782 39 19.74387090560194 28.313242597792616 28.847554906856537 23.09533158974891 40 22.948880376772294 24.140864827753123 30.850454295120187 22.0598005003544 41 18.72179949766987 23.371687251335473 31.765095217985095 26.14141803300956 42 20.82113935586163 25.568331962668523 27.46528266565904 26.1452460158108 43 20.054060995818855 24.940295816632215 28.80544709604285 26.20019609150608 44 19.62816703835145 26.383568816017267 31.385630987397295 22.602633158233992 45 19.127812641234044 31.721876057325893 27.209548717872728 21.940762583567334 46 22.340725044639218 28.446851545887636 28.43437973095455 20.778043678518596 47 20.929681190774314 26.430122026213038 29.449783039813493 23.190413743199155 48 20.308436627127307 25.945820460197623 32.06725889265101 21.678484020024055 49 20.343999822184024 25.54820418213295 32.50303151541195 21.604764480271072 50 19.368234657815382 28.08615677935754 31.612469839200024 20.93313872362705 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 568.0 1 825.5 2 1083.0 3 11710.0 4 22337.0 5 15760.0 6 9183.0 7 9289.0 8 9395.0 9 9832.5 10 10270.0 11 10271.5 12 10273.0 13 9770.0 14 9267.0 15 8720.0 16 8173.0 17 7584.5 18 6996.0 19 6431.5 20 5867.0 21 5629.5 22 5392.0 23 5194.5 24 4997.0 25 5359.0 26 5721.0 27 6372.0 28 7023.0 29 8025.5 30 9028.0 31 10095.5 32 11163.0 33 13582.0 34 16001.0 35 17830.0 36 19659.0 37 21247.5 38 22836.0 39 27862.5 40 32889.0 41 42723.5 42 52558.0 43 60175.5 44 67793.0 45 71042.5 46 74292.0 47 71562.5 48 68833.0 49 68489.0 50 68145.0 51 61614.5 52 55084.0 53 48232.0 54 41380.0 55 37681.5 56 33983.0 57 30951.5 58 27920.0 59 26141.0 60 24362.0 61 21937.5 62 19513.0 63 17460.0 64 15407.0 65 12807.5 66 10208.0 67 8587.0 68 6966.0 69 6350.0 70 5734.0 71 4954.0 72 4174.0 73 3398.0 74 2622.0 75 1976.0 76 1330.0 77 965.0 78 600.0 79 455.5 80 311.0 81 266.5 82 222.0 83 166.0 84 110.0 85 89.0 86 68.0 87 48.5 88 29.0 89 27.0 90 25.0 91 19.0 92 13.0 93 12.5 94 12.0 95 10.5 96 9.0 97 5.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 809826.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.166366085880693 #Duplication Level Percentage of deduplicated Percentage of total 1 75.60156242220447 23.562259711149856 2 7.499058552763745 4.674368083097791 3 3.4775857929721528 3.2515113575648344 4 2.2018273284866687 2.744918263100488 5 1.528061102260331 2.3812055857319927 6 1.141620347888985 2.134809461603915 7 0.8946638696842744 1.9518395180473522 8 0.7084731168703489 1.7664426017908983 9 0.5821815564533086 1.633003516518447 >10 5.750489140669389 39.080368428499426 >50 0.5575660329723596 11.109073030141765 >100 0.05293096497159602 2.9269785183242027 >500 0.0023878630814253843 0.5054427265942506 >1k 0.0011939315407126921 0.44702222985170037 >5k 0.0 0.0 >10k+ 3.9797718023756407E-4 1.8307569679831017 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14760 1.8226137466566892 No Hit TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 1337 0.16509719371815673 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 1188 0.14669817960895304 No Hit GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 1079 0.13323849814651542 No Hit GAATCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTT 1000 0.1234833161691524 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.2348331616915238E-4 0.0 0.0 0.03827982801243724 0.0 2 1.2348331616915238E-4 0.0 0.0 0.14583379639576896 0.0 3 1.2348331616915238E-4 0.0 0.0 0.1984376890838279 0.0 4 1.2348331616915238E-4 0.0 0.0 0.3226619051499952 0.0 5 1.2348331616915238E-4 0.0 0.0 0.6610061914534727 0.0 6 1.2348331616915238E-4 0.0 0.0 0.9234082383129215 0.0 7 1.2348331616915238E-4 0.0 0.0 1.1128316453164013 0.0 8 1.2348331616915238E-4 0.0 0.0 1.5657684490248522 0.0 9 1.2348331616915238E-4 0.0 0.0 1.7666758044320632 0.0 10 1.2348331616915238E-4 0.0 0.0 2.1666382655039476 0.0 11 1.2348331616915238E-4 0.0 0.0 2.3870559848658846 0.0 12 3.7044994850745716E-4 0.0 0.0 2.6543973643720995 0.0 13 4.939332646766095E-4 0.0 0.0 2.7473803014474716 0.0 14 4.939332646766095E-4 0.0 0.0 2.785042712879063 0.0 15 6.17416580845762E-4 0.0 0.0 2.8403632385228432 0.0 16 6.17416580845762E-4 0.0 0.0 2.930012126061648 0.0 17 6.17416580845762E-4 0.0 0.0 3.0365782279156264 0.0 18 6.17416580845762E-4 0.0 0.0 3.219457019162141 0.0 19 6.17416580845762E-4 0.0 0.0 3.2902129593270653 0.0 20 6.17416580845762E-4 0.0 0.0 3.3683778984621386 0.0 21 6.17416580845762E-4 0.0 0.0 3.463460051912386 0.0 22 6.17416580845762E-4 0.0 0.0 3.566445137597459 0.0 23 6.17416580845762E-4 0.0 0.0 3.6859769876491986 0.0 24 6.17416580845762E-4 0.0 0.0 3.7725387922837745 0.0 25 7.408998970149143E-4 0.0 0.0 3.8395902329636242 0.0 26 0.0011113498455223715 0.0 0.0 3.909975723180041 0.0 27 0.0011113498455223715 0.0 0.0 3.9894989787929753 0.0 28 0.0011113498455223715 0.0 0.0 4.085445515456406 0.0 29 0.0011113498455223715 0.0 0.0 4.177811035950933 0.0 30 0.0011113498455223715 0.0 0.0 4.306480651399189 0.0 31 0.0011113498455223715 0.0 0.0 4.40403247117282 0.0 32 0.0011113498455223715 0.0 0.0 4.497756308145206 0.0 33 0.0011113498455223715 0.0 0.0 4.602593643572817 0.0 34 0.0011113498455223715 0.0 0.0 4.713358178176547 0.0 35 0.001234833161691524 0.0 0.0 4.8584510746753 0.0 36 0.0014817997940298287 0.0 0.0 4.955508961184254 0.0 37 0.0016052831101989811 0.0 0.0 5.063556862832263 0.0 38 0.0018522497425372858 0.0 0.0 5.197536260875793 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTCGAT 25 4.4416716E-5 44.0 14 GCGTTAG 30 2.5267855E-6 44.0 1 GTCCGAC 20 7.8551035E-4 44.0 25 TCGTAAG 25 4.4416716E-5 44.0 1 CGGTCTA 170 0.0 44.0 31 ATCGATC 20 7.8551035E-4 44.0 10 CGTTTTT 9310 0.0 43.50376 1 TCACGAC 170 0.0 41.411766 25 CGACGGT 165 0.0 41.333332 28 TAGCCGT 60 3.6379788E-12 40.333332 44 GTACGAG 60 3.6379788E-12 40.333332 1 CTCACGA 175 0.0 40.22857 24 TTCGAAT 55 7.8216544E-11 40.000004 16 TATCGGG 50 1.3460522E-9 39.6 3 CATATGC 695 0.0 39.568348 33 ATATGCT 690 0.0 39.536232 34 TAGGGTA 430 0.0 39.39535 5 GTTTTTT 10690 0.0 39.143124 2 GTTGATC 720 0.0 38.805557 16 AGCATAT 710 0.0 38.732395 31 >>END_MODULE