##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546084_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 813353 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.821637099758654 31.0 28.0 31.0 16.0 33.0 2 28.71797731120436 31.0 28.0 33.0 16.0 33.0 3 28.25953798658147 31.0 27.0 33.0 16.0 34.0 4 32.25288527859367 35.0 32.0 35.0 26.0 37.0 5 33.708762370090234 35.0 33.0 35.0 28.0 37.0 6 33.54175739193192 35.0 33.0 37.0 28.0 37.0 7 34.3960469808312 35.0 35.0 37.0 31.0 37.0 8 34.74664506063173 35.0 35.0 37.0 32.0 37.0 9 36.54078241550717 39.0 37.0 39.0 32.0 39.0 10 36.15974613728603 38.0 35.0 39.0 31.0 39.0 11 36.33316776356637 38.0 35.0 39.0 32.0 39.0 12 35.06811064814416 37.0 34.0 39.0 29.0 39.0 13 35.25384673075528 37.0 34.0 39.0 27.0 39.0 14 36.00382982542635 38.0 34.0 40.0 29.0 41.0 15 36.58515921131415 38.0 35.0 40.0 31.0 41.0 16 36.226974019890505 38.0 34.0 40.0 31.0 41.0 17 35.737415365775995 37.0 34.0 40.0 30.0 41.0 18 35.4841255887665 37.0 34.0 39.0 29.0 40.0 19 34.95381341188881 37.0 33.0 39.0 27.0 40.0 20 35.19608460287231 35.0 34.0 39.0 29.0 40.0 21 35.37913796346728 36.0 34.0 39.0 30.0 40.0 22 35.77689023093294 36.0 34.0 39.0 31.0 40.0 23 36.15917197084169 37.0 35.0 40.0 31.0 41.0 24 35.74741225519547 36.0 34.0 40.0 31.0 41.0 25 35.41361008073985 36.0 34.0 40.0 30.0 41.0 26 35.56772151820919 36.0 34.0 40.0 30.0 41.0 27 35.89678651212942 37.0 35.0 40.0 31.0 41.0 28 35.82010639906658 36.0 35.0 40.0 31.0 41.0 29 35.935942942363276 37.0 35.0 40.0 31.0 41.0 30 35.57623442711836 36.0 35.0 40.0 30.0 41.0 31 34.89767419558297 36.0 34.0 40.0 29.0 41.0 32 34.86003125334265 36.0 34.0 40.0 27.0 41.0 33 34.553356291794586 36.0 34.0 40.0 25.0 41.0 34 34.152869664217135 36.0 34.0 40.0 22.0 41.0 35 33.91876098077956 36.0 33.0 40.0 21.0 41.0 36 33.49939817029014 36.0 33.0 40.0 18.0 41.0 37 33.43237315163281 36.0 33.0 40.0 18.0 41.0 38 33.27835638400547 36.0 33.0 40.0 18.0 41.0 39 33.06346321953691 35.0 33.0 40.0 17.0 40.0 40 32.84017394661359 35.0 32.0 40.0 15.0 40.0 41 32.53277113381275 35.0 32.0 39.0 15.0 40.0 42 32.72226819105604 35.0 32.0 39.0 15.0 40.0 43 32.55820904330592 35.0 32.0 39.0 15.0 40.0 44 32.40144562078212 35.0 32.0 39.0 14.0 40.0 45 32.283517734612154 35.0 31.0 39.0 13.0 40.0 46 32.09108345330994 35.0 31.0 39.0 13.0 40.0 47 32.0465308420821 35.0 31.0 38.0 12.0 40.0 48 32.05483842808719 35.0 31.0 38.0 12.0 40.0 49 32.092519484160015 35.0 31.0 38.0 12.0 40.0 50 32.28325585569857 35.0 32.0 39.0 12.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 3.0 12 6.0 13 20.0 14 41.0 15 92.0 16 240.0 17 489.0 18 915.0 19 1564.0 20 2532.0 21 3526.0 22 5178.0 23 7348.0 24 10577.0 25 15914.0 26 22713.0 27 25450.0 28 24586.0 29 23795.0 30 25905.0 31 31651.0 32 42051.0 33 63522.0 34 99582.0 35 76380.0 36 79608.0 37 110705.0 38 116255.0 39 22703.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.46137777816028 21.968075362112145 25.590364823145666 22.980182036581905 2 39.65166416057973 20.286394714226173 27.447000256961 12.614940868233104 3 29.450681315492783 18.529592931974186 38.90217408677413 13.117551665758903 4 25.359714662637256 24.284781638476773 35.645777417677195 14.709726281208773 5 20.221847094680907 28.28316856272738 36.813413118289354 14.681571224302365 6 18.52012594777421 36.72771846910259 34.46892062855857 10.283234954564623 7 75.03507087328626 5.111679676597984 17.19167446360928 2.661574986506474 8 76.35036693784863 3.9024876037833516 16.734431421535298 3.012714036832716 9 72.76078160405137 4.90402076343236 18.038293336349653 4.296904296166609 10 42.231847672535785 22.002500759202952 23.69635324391746 12.069298324343796 11 37.0518089931432 20.367540293083078 28.76192747798311 13.818723235790609 12 33.4902557684056 19.694646727804532 32.8279357179478 13.987161785842064 13 20.625116032030373 31.632636751816246 33.627219669688316 14.115027546465065 14 15.541591412338802 34.791289882744636 35.26439319704974 14.402725507866817 15 14.935212632153567 22.139464660485668 48.041994066536915 14.883328640823848 16 16.807954233893525 17.220321311902705 48.0733457674589 17.89837868674487 17 16.56562402794359 17.73067782377393 35.76048775869764 29.94321038958484 18 19.911649677323375 22.000533593654907 39.62080425104475 18.467012477976965 19 25.408279062104643 23.420335327957233 32.291022471177946 18.88036313876017 20 26.32989612136428 21.540462751105608 32.396634671538685 19.733006455991433 21 21.839471914408627 25.0699265878407 34.82362516644065 18.266976331310023 22 20.285042287911892 21.551773953006876 32.591138165101746 25.572045593979492 23 18.299065719312523 27.336347194883402 32.55818814217197 21.806398943632104 24 18.2234527935595 23.18796389759428 42.13607129991529 16.45251200893093 25 19.11162803850235 22.23954420774252 39.209174860116086 19.43965289363905 26 15.984326608495941 27.88198973877271 34.26740910773059 21.866274545000756 27 16.57976303032017 27.936824478424498 35.96667129770223 19.516741193553106 28 15.1389372142231 25.389836885091714 42.20307787639561 17.268148024289577 29 16.62832742978756 24.085852022430604 39.83264339099997 19.453177156781866 30 18.215584131367315 26.10453271826624 37.8589616070759 17.820921543290552 31 26.79820446964602 23.66205079467341 31.170229900178644 18.369514835501928 32 26.16858854642449 24.40047556227124 31.58284287388133 17.84809301742294 33 24.702681369589836 23.554225533071126 30.184679960607507 21.55841313673153 34 18.126569890318226 25.360083506177517 32.10451058765382 24.408836015850436 35 19.21699434316957 23.901307304454523 34.02962797211051 22.852070380265395 36 27.381346106794958 24.87136581533479 28.62201282837833 19.125275249491917 37 19.09970209736732 29.385273061020246 30.629874113699714 20.885150727912727 38 20.48175884271651 31.047527949119264 27.565276085537278 20.905437122626953 39 19.622230446067082 28.242472825452168 28.990856368636987 23.144440359843756 40 22.82071867934341 24.198226354362742 30.915481961706664 22.065573004587183 41 18.79429964603315 23.379393694988522 31.760010721052232 26.066295937926093 42 20.724949683593717 25.757573894729596 27.53933408987242 25.97814233180427 43 20.089309315881295 24.870382232560768 28.885981855356775 26.154326596201155 44 19.543420876298484 26.489605374296275 31.43997747595447 22.526996273450763 45 19.127734206426975 31.757428816270426 27.29061059589133 21.82422638141127 46 22.310239219625426 28.594595458552437 28.378944935347878 20.716220386474262 47 20.95055898238526 26.539768095771453 29.486582086744622 23.023090835098657 48 20.30754174386767 25.991051855713327 32.07008519056301 21.63132120985599 49 20.27852605203399 25.498030990234255 32.69306193005988 21.530381027671872 50 19.34289293824453 28.138581894945986 31.654644416385015 20.863880750424478 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 488.0 1 774.5 2 1061.0 3 12224.0 4 23387.0 5 16393.0 6 9399.0 7 9415.5 8 9432.0 9 9871.0 10 10310.0 11 10328.0 12 10346.0 13 9840.0 14 9334.0 15 8627.0 16 7920.0 17 7489.0 18 7058.0 19 6445.5 20 5833.0 21 5586.0 22 5339.0 23 5206.0 24 5073.0 25 5368.0 26 5663.0 27 6340.5 28 7018.0 29 8048.0 30 9078.0 31 10121.5 32 11165.0 33 13551.5 34 15938.0 35 17979.0 36 20020.0 37 21468.0 38 22916.0 39 27980.0 40 33044.0 41 42763.5 42 52483.0 43 60339.0 44 68195.0 45 71312.0 46 74429.0 47 71694.5 48 68960.0 49 68401.0 50 67842.0 51 61461.5 52 55081.0 53 48376.5 54 41672.0 55 37996.5 56 34321.0 57 31329.5 58 28338.0 59 26304.5 60 24271.0 61 21867.0 62 19463.0 63 17516.0 64 15569.0 65 13116.5 66 10664.0 67 8836.0 68 7008.0 69 6346.0 70 5684.0 71 4913.5 72 4143.0 73 3389.0 74 2635.0 75 2013.0 76 1391.0 77 995.5 78 600.0 79 450.5 80 301.0 81 259.0 82 217.0 83 169.5 84 122.0 85 93.0 86 64.0 87 47.0 88 30.0 89 27.5 90 25.0 91 15.5 92 6.0 93 8.0 94 10.0 95 8.0 96 6.0 97 3.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 813353.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.997708081493826 #Duplication Level Percentage of deduplicated Percentage of total 1 75.28437431957052 23.336430582559572 2 7.662798897572863 4.750584066283127 3 3.5194150342485053 3.2728139954776725 4 2.2121178318084347 2.7428233116905965 5 1.5183149802983258 2.3532142267523275 6 1.1458144754672395 2.1310573575650076 7 0.9421248601315617 2.044259797347345 8 0.707038233321284 1.7533251807158627 9 0.5737423654198195 1.6006228521542394 >10 5.8177272644989575 39.0989115160106 >50 0.5538809400762091 10.958993076333886 >100 0.05746315192629455 2.9157680194931923 >500 0.0035914469953934095 0.7008629559837276 >1k 0.0011971489984644698 0.43541080216426425 >5k 0.0 0.0 >10k+ 3.9904966615482326E-4 1.9049222594686561 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15400 1.8933968399944427 No Hit TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 1282 0.15761913953719972 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 1144 0.14065233668530144 No Hit GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 1094 0.13450494434765717 No Hit GAATCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTT 990 0.12171836828535702 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCC 827 0.10167786926463664 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03159759661549168 0.0 2 0.0 0.0 0.0 0.13389020511389274 0.0 3 0.0 0.0 0.0 0.18319229166179998 0.0 4 0.0 0.0 0.0 0.3058942427211801 0.0 5 0.0 0.0 0.0 0.6265422270527065 0.0 6 0.0 0.0 0.0 0.8870687143220717 0.0 7 0.0 0.0 0.0 1.073211754305941 0.0 8 0.0 0.0 0.0 1.5138568370682841 0.0 9 0.0 0.0 0.0 1.699139242124883 0.0 10 0.0 0.0 0.0 2.0904822383393187 0.0 11 0.0 0.0 0.0 2.3041655959958347 0.0 12 0.0 0.0 0.0 2.565306822498964 0.0 13 0.0 0.0 0.0 2.6608372994259564 0.0 14 0.0 0.0 0.0 2.699442923306363 0.0 15 1.229478467528859E-4 0.0 0.0 2.7470237399997295 0.0 16 1.229478467528859E-4 0.0 0.0 2.837021563822842 0.0 17 1.229478467528859E-4 0.0 0.0 2.937347006773197 0.0 18 1.229478467528859E-4 0.0 0.0 3.108367461606461 0.0 19 1.229478467528859E-4 0.0 0.0 3.177832995021842 0.0 20 2.458956935057718E-4 0.0 0.0 3.257257304024206 0.0 21 2.458956935057718E-4 0.0 0.0 3.34774691923433 0.0 22 2.458956935057718E-4 0.0 0.0 3.4448757181691096 0.0 23 2.458956935057718E-4 0.0 0.0 3.56204501612461 0.0 24 2.458956935057718E-4 0.0 0.0 3.6536411619555103 0.0 25 3.688435402586577E-4 0.0 0.0 3.723475538911149 0.0 26 6.147392337644295E-4 0.0 0.0 3.7979819340433982 0.0 27 6.147392337644295E-4 0.0 0.0 3.874701390417199 0.0 28 6.147392337644295E-4 0.0 0.0 3.9681417539493924 0.0 29 7.376870805173154E-4 0.0 0.0 4.051008602660837 0.0 30 7.376870805173154E-4 0.0 0.0 4.189324930257834 0.0 31 7.376870805173154E-4 0.0 0.0 4.283871824410803 0.0 32 7.376870805173154E-4 0.0 0.0 4.383213684587135 0.0 33 7.376870805173154E-4 1.229478467528859E-4 0.0 4.490424206955652 0.0 34 7.376870805173154E-4 1.229478467528859E-4 0.0 4.5956675637761215 0.0 35 7.376870805173154E-4 1.229478467528859E-4 0.0 4.739270648783492 0.0 36 7.376870805173154E-4 1.229478467528859E-4 0.0 4.834309334323473 0.0 37 7.376870805173154E-4 1.229478467528859E-4 0.0 4.9374625777491445 0.0 38 7.376870805173154E-4 1.229478467528859E-4 0.0 5.06422180775137 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CACGCGA 20 7.8551215E-4 44.000004 30 GTTTGCG 35 1.4453872E-7 44.0 1 TAAGTCG 25 4.4416884E-5 44.0 13 AACTCCG 30 2.5268018E-6 44.0 29 TGTCGGT 25 4.4416884E-5 44.0 44 GCGTAAG 30 2.5268018E-6 44.0 1 TACGTAG 45 4.802132E-10 44.0 1 CGTTTTT 9990 0.0 42.81081 1 CGTAAGG 105 0.0 41.904762 2 TCACGAC 145 0.0 40.965515 25 CGGTCTA 135 0.0 40.74074 31 GGTACCT 740 0.0 40.72973 8 ATGGGAC 380 0.0 40.526314 5 ATCCTGC 745 0.0 40.45638 20 GTTGATC 740 0.0 40.43243 16 TCGTTCA 110 0.0 40.0 16 TGGGCGA 275 0.0 40.0 6 ATGGGCC 105 0.0 39.809525 5 ATGGGCG 190 0.0 39.36842 5 GACGGGA 175 0.0 38.971428 4 >>END_MODULE