##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546083_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 801245 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.71272457238423 31.0 28.0 31.0 16.0 33.0 2 28.608488040486993 31.0 28.0 33.0 16.0 33.0 3 28.146006527341825 31.0 27.0 33.0 16.0 34.0 4 32.13287820828835 35.0 32.0 35.0 25.0 37.0 5 33.64543803705483 35.0 33.0 35.0 28.0 37.0 6 33.474509045298255 35.0 33.0 37.0 28.0 37.0 7 34.3078209536409 35.0 35.0 37.0 31.0 37.0 8 34.71056293643018 35.0 35.0 37.0 32.0 37.0 9 36.52526880042933 39.0 37.0 39.0 32.0 39.0 10 36.233929696909186 38.0 35.0 39.0 31.0 39.0 11 36.34750669270947 38.0 35.0 39.0 32.0 39.0 12 35.230807056518294 37.0 34.0 39.0 30.0 39.0 13 35.32413681208619 37.0 34.0 39.0 30.0 39.0 14 36.06486655142934 38.0 34.0 40.0 29.0 41.0 15 36.55186990246429 38.0 35.0 40.0 31.0 41.0 16 36.18472127751187 38.0 34.0 40.0 31.0 41.0 17 35.69384645145992 37.0 34.0 40.0 30.0 41.0 18 35.41966564533944 37.0 34.0 39.0 29.0 40.0 19 34.85748179395815 37.0 33.0 39.0 27.0 40.0 20 35.284166515859695 35.0 34.0 39.0 30.0 40.0 21 35.44719655036849 36.0 34.0 39.0 30.0 40.0 22 35.786358729227636 36.0 34.0 40.0 31.0 41.0 23 36.14138871381412 37.0 35.0 40.0 31.0 41.0 24 35.75762469656597 36.0 34.0 40.0 31.0 41.0 25 35.4431927812342 36.0 34.0 40.0 30.0 41.0 26 35.572716210397566 36.0 34.0 40.0 30.0 41.0 27 35.90085055132949 37.0 35.0 40.0 31.0 41.0 28 35.82953278959619 36.0 35.0 40.0 31.0 41.0 29 35.93363827543386 37.0 35.0 40.0 31.0 41.0 30 35.57814151726376 36.0 35.0 40.0 30.0 41.0 31 34.87189436439541 36.0 34.0 40.0 28.0 41.0 32 34.84964274348046 36.0 34.0 40.0 27.0 41.0 33 34.55524714662806 36.0 34.0 40.0 24.0 41.0 34 34.16359790076693 36.0 34.0 40.0 22.0 41.0 35 33.886487903200646 36.0 33.0 40.0 20.0 41.0 36 33.51709651854302 36.0 33.0 40.0 18.0 41.0 37 33.467150497038986 36.0 33.0 40.0 18.0 41.0 38 33.292132868223824 36.0 33.0 40.0 18.0 41.0 39 33.053782550905154 35.0 33.0 40.0 16.0 41.0 40 32.870528989260464 35.0 32.0 40.0 15.0 40.0 41 32.56551366935207 35.0 32.0 39.0 15.0 40.0 42 32.78332594899188 35.0 32.0 40.0 15.0 40.0 43 32.60792891063283 35.0 32.0 39.0 15.0 40.0 44 32.44457188500396 35.0 32.0 39.0 13.0 40.0 45 32.3635080406118 35.0 32.0 39.0 14.0 40.0 46 32.17555678974596 35.0 31.0 39.0 13.0 40.0 47 32.15019500901722 35.0 31.0 39.0 13.0 40.0 48 32.1469338342205 35.0 31.0 39.0 13.0 40.0 49 32.193432720328985 35.0 31.0 39.0 13.0 40.0 50 32.30275883156837 35.0 32.0 39.0 12.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 2.0 11 6.0 12 12.0 13 23.0 14 45.0 15 83.0 16 225.0 17 428.0 18 937.0 19 1659.0 20 2612.0 21 3562.0 22 5193.0 23 7300.0 24 10634.0 25 15791.0 26 22133.0 27 24911.0 28 24015.0 29 23839.0 30 25649.0 31 31000.0 32 41305.0 33 62623.0 34 97208.0 35 74402.0 36 77545.0 37 106122.0 38 116602.0 39 25377.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.516440040187458 22.00225898445544 25.48184388046103 22.999457094896066 2 39.609732354024054 20.227645726338388 27.555616571710278 12.607005347927288 3 29.566362348595 18.67506193486387 38.80585838289162 12.952717333649508 4 25.422436333456062 24.28058833440458 35.62905228737777 14.667923044761592 5 20.147021198260205 28.270753639648298 36.79960561376358 14.782619548327917 6 18.54239340027083 36.815206335140935 34.40670456601913 10.235695698569101 7 74.97494524146796 5.138752815930209 17.204600340719757 2.681701601882071 8 76.30475073167383 3.967076237605227 16.714612883699743 3.0135601470211983 9 72.75028237305693 4.908860585713484 18.02794401213112 4.312913029098466 10 42.215801658668695 22.155395665495572 23.723829789889482 11.904972885946247 11 37.064693071407625 20.452420919943336 28.643174060368555 13.83971194828049 12 33.50273636652959 20.057161043126634 32.839019276251335 13.601083314092444 13 20.586337512246565 31.757078047288907 33.48925734325955 14.167327097204973 14 15.464433475403903 34.813196962227536 35.27435428614219 14.448015276226373 15 14.87859518624141 22.091869528046974 47.99992511653739 15.029610169174223 16 16.860885247333837 17.3564889640497 47.99643055494886 17.786195233667605 17 16.70387958739212 17.740266709932666 35.671985472608256 29.883868230066955 18 19.929609545145368 21.972929628266012 39.65016942383416 18.447291402754463 19 25.437288220207304 23.429163364513975 32.23945235227677 18.894096063001953 20 26.359602868036617 21.692241449244612 32.44001522630406 19.508140456414704 21 21.824660372295615 25.163713970133976 34.736815830364 18.274809827206408 22 20.274822307783513 21.547466754862747 32.692871718388254 25.484839218965483 23 18.22688441113517 27.285786494767517 32.607379765240346 21.879949328856966 24 18.07911437824885 23.24507485226117 42.18597307939519 16.48983769009479 25 19.200993453937308 22.221542724135563 39.191882632652934 19.38558118927419 26 15.972018546137573 28.043607136393987 34.11203814064363 21.872336176824817 27 16.53114840030203 28.010658412845007 35.98986577139327 19.46832741545969 28 15.218191689183708 25.279658531410494 42.283571192331934 17.218578587073864 29 16.614019432258548 24.097623074090947 39.89004611573239 19.398311377918116 30 18.28367103694875 26.132581170553326 37.84722525569582 17.736522536802102 31 26.841602755711424 23.52638706013766 31.19807299889547 18.43393718525545 32 26.253642768441615 24.34686019881559 31.586468558306137 17.813028474436656 33 24.736878233249506 23.642082009872137 30.190640815231294 21.43039894164706 34 18.10831892866726 25.387365911799765 32.10254042146909 24.40177473806389 35 19.31506592864854 23.912161698356933 33.94542243633346 22.827349936661072 36 27.392994652072712 24.86667623510911 28.71281568059707 19.027513432221106 37 19.173161767000106 29.444177498767544 30.542468283733438 20.84019245049891 38 20.459534848891412 31.02584103488945 27.581825783624236 20.9327983325949 39 19.628827636989936 28.288850476446033 29.052037766226313 23.030284120337726 40 22.904355097379703 24.207701764129574 30.955200968492786 21.93274216999794 41 18.781022034458875 23.347415584496627 31.858295527585195 26.013266853459307 42 20.829084736878233 25.685277287221766 27.58881490680129 25.89682306909872 43 20.069891231770555 24.92808067445039 28.8771848810289 26.12484321275016 44 19.591760322997334 26.495017129592075 31.519323053497995 22.3938994939126 45 19.179402055551048 31.80662593838339 27.234241711336733 21.77973029472883 46 22.376925909054034 28.53584109729234 28.488040486992116 20.599192506661506 47 21.003063981678512 26.457949815599473 29.475628553064293 23.06335764965772 48 20.318753939182148 25.973953035588366 32.108156681164935 21.599136344064547 49 20.322872529625773 25.546742881390838 32.78497837740017 21.345406211583224 50 19.41528496277668 28.05771018851912 31.713271221661287 20.813733627042915 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 567.0 1 827.0 2 1087.0 3 12209.0 4 23331.0 5 16318.0 6 9305.0 7 9309.5 8 9314.0 9 9764.5 10 10215.0 11 10114.5 12 10014.0 13 9499.5 14 8985.0 15 8516.0 16 8047.0 17 7462.0 18 6877.0 19 6212.0 20 5547.0 21 5411.0 22 5275.0 23 5145.0 24 5015.0 25 5222.0 26 5429.0 27 6174.5 28 6920.0 29 7893.0 30 8866.0 31 9935.0 32 11004.0 33 13534.5 34 16065.0 35 17952.5 36 19840.0 37 21223.5 38 22607.0 39 27705.5 40 32804.0 41 42403.5 42 52003.0 43 59758.0 44 67513.0 45 70242.5 46 72972.0 47 70451.5 48 67931.0 49 67412.0 50 66893.0 51 60423.5 52 53954.0 53 47131.0 54 40308.0 55 37056.0 56 33804.0 57 30787.5 58 27771.0 59 25954.5 60 24138.0 61 21598.0 62 19058.0 63 17137.5 64 15217.0 65 12886.5 66 10556.0 67 8714.5 68 6873.0 69 6293.5 70 5714.0 71 4888.5 72 4063.0 73 3293.0 74 2523.0 75 1943.0 76 1363.0 77 989.0 78 615.0 79 480.5 80 346.0 81 287.0 82 228.0 83 188.5 84 149.0 85 109.0 86 69.0 87 47.5 88 26.0 89 21.5 90 17.0 91 14.0 92 11.0 93 8.0 94 5.0 95 7.5 96 10.0 97 5.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 801245.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.648292507769874 #Duplication Level Percentage of deduplicated Percentage of total 1 75.1169803708995 23.022071867077358 2 7.579204922612373 4.645793788891067 3 3.477149604382234 3.19706094505149 4 2.2256826154163223 2.7285348730695094 5 1.5720431781690765 2.4090219579685024 6 1.1686050780247002 2.1489450154419756 7 0.9270401899475521 1.9888539235579785 8 0.7196219454684859 1.7644147103782863 9 0.6269853659062546 1.7294427803147414 >10 5.9547093207560415 39.32174355884754 >50 0.5667701354415111 11.009551859542082 >100 0.06110618662525313 3.1644040196450973 >500 0.0020505431753440645 0.3906485419866922 >1k 0.0016404345402752517 0.5742835226310157 >5k 0.0 0.0 >10k+ 4.101086350688129E-4 1.9052286355966155 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15158 1.8918058771037571 No Hit TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 1294 0.16149866769839438 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 1196 0.1492677021385469 No Hit GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 1053 0.13142047688285108 No Hit GAATCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTT 1026 0.12805072106534207 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCC 820 0.10234073223545857 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03357275240407116 0.0 2 0.0 0.0 0.0 0.13840960005990677 0.0 3 0.0 0.0 0.0 0.19120244120088112 0.0 4 0.0 0.0 0.0 0.3103919525238847 0.0 5 0.0 0.0 0.0 0.6275234166827874 0.0 6 0.0 0.0 0.0 0.8864953915469052 0.0 7 1.2480577101885192E-4 0.0 0.0 1.0655916729589576 0.0 8 1.2480577101885192E-4 0.0 0.0 1.4820685308488664 0.0 9 1.2480577101885192E-4 0.0 0.0 1.6792616490586525 0.0 10 1.2480577101885192E-4 0.0 0.0 2.061292114147358 0.0 11 1.2480577101885192E-4 0.0 0.0 2.2684696940386524 0.0 12 1.2480577101885192E-4 0.0 0.0 2.5268176400476756 0.0 13 1.2480577101885192E-4 0.0 0.0 2.620297162540796 0.0 14 2.4961154203770384E-4 0.0 0.0 2.6594861746407155 0.0 15 2.4961154203770384E-4 0.0 0.0 2.7091588715062183 0.0 16 2.4961154203770384E-4 0.0 0.0 2.7967725227614526 0.0 17 2.4961154203770384E-4 0.0 0.0 2.896492333805515 0.0 18 2.4961154203770384E-4 0.0 0.0 3.0613607573214185 0.0 19 3.744173130565557E-4 0.0 0.0 3.125885340938165 0.0 20 3.744173130565557E-4 0.0 0.0 3.203264918969853 0.0 21 3.744173130565557E-4 0.0 0.0 3.2956211895238035 0.0 22 3.744173130565557E-4 0.0 0.0 3.3909727985822062 0.0 23 3.744173130565557E-4 0.0 0.0 3.4980561501163816 0.0 24 3.744173130565557E-4 0.0 0.0 3.582549657096144 0.0 25 3.744173130565557E-4 0.0 0.0 3.6505688023014184 0.0 26 3.744173130565557E-4 0.0 0.0 3.7188375590487306 0.0 27 3.744173130565557E-4 0.0 0.0 3.789976848529476 0.0 28 3.744173130565557E-4 0.0 0.0 3.878214528639804 0.0 29 4.992230840754077E-4 0.0 0.0 3.9654537625819817 0.0 30 4.992230840754077E-4 0.0 0.0 4.098621520259097 0.0 31 4.992230840754077E-4 0.0 0.0 4.193349100462405 0.0 32 4.992230840754077E-4 0.0 0.0 4.28096275171764 0.0 33 6.240288550942596E-4 0.0 0.0 4.389294160962003 0.0 34 6.240288550942596E-4 0.0 0.0 4.492383727823575 0.0 35 6.240288550942596E-4 0.0 0.0 4.627922795150048 0.0 36 6.240288550942596E-4 0.0 0.0 4.720154259932979 0.0 37 6.240288550942596E-4 0.0 0.0 4.815006645907307 0.0 38 6.240288550942596E-4 0.0 0.0 4.934695380314386 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCGAAG 20 7.855053E-4 44.0 1 CACGACA 20 7.855053E-4 44.0 17 ATGTCGA 20 7.855053E-4 44.0 16 CCGAACG 30 2.5267545E-6 44.0 37 CGATCAA 25 4.441629E-5 44.0 10 CGGTCTA 115 0.0 43.999996 31 CGTTTTT 9590 0.0 42.921795 1 CTCACGA 120 0.0 42.166664 24 CGACGGT 120 0.0 40.333332 28 GGTACCT 815 0.0 39.95092 8 TAACGGG 205 0.0 39.707317 3 CAACGAC 50 1.3460522E-9 39.6 12 AGGGTAC 470 0.0 39.319153 6 TGGGTAC 280 0.0 39.28571 6 GTTTTTT 10865 0.0 39.2416 2 TGATCCT 845 0.0 39.053257 18 GGGTACC 840 0.0 39.02381 7 AGGGCGA 565 0.0 38.938053 6 ATCCTGC 855 0.0 38.8538 20 GCGATAT 85 0.0 38.823532 9 >>END_MODULE