##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546082_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 683853 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.517282222933876 28.0 16.0 30.0 16.0 33.0 2 25.87860256517117 30.0 25.0 31.0 10.0 33.0 3 26.33400891712108 30.0 25.0 31.0 16.0 33.0 4 28.218716595525645 32.0 19.0 35.0 10.0 37.0 5 31.236828675168493 33.0 30.0 35.0 19.0 37.0 6 29.742481205756206 33.0 28.0 35.0 17.0 37.0 7 29.599623018397228 32.0 28.0 35.0 17.0 35.0 8 32.29712964628363 33.0 32.0 35.0 28.0 35.0 9 26.854019796652203 30.0 23.0 34.0 10.0 35.0 10 31.133211377298924 34.0 28.0 37.0 17.0 37.0 11 33.43233852889437 35.0 32.0 37.0 27.0 39.0 12 32.97092650028588 35.0 31.0 37.0 23.0 39.0 13 33.07130187335582 35.0 31.0 38.0 23.0 39.0 14 32.83887911583337 35.0 31.0 38.0 21.0 40.0 15 31.740311148741032 34.0 27.0 38.0 17.0 40.0 16 30.390696538583583 33.0 26.0 38.0 17.0 40.0 17 30.37735302762436 32.0 25.0 37.0 17.0 40.0 18 31.466940994628963 34.0 27.0 38.0 18.0 39.0 19 31.15518978493916 34.0 27.0 37.0 18.0 39.0 20 31.606257485161283 34.0 29.0 37.0 18.0 39.0 21 32.60504816093517 34.0 31.0 37.0 23.0 39.0 22 33.004185109957845 34.0 31.0 37.0 25.0 39.0 23 34.290873915885435 35.0 33.0 38.0 28.0 40.0 24 33.96222726229175 35.0 33.0 38.0 27.0 40.0 25 32.7846145297308 35.0 31.0 38.0 23.0 39.0 26 26.484340932919793 33.0 21.0 36.0 0.0 39.0 27 29.75046830239832 34.0 24.0 37.0 15.0 39.0 28 31.210400480805085 34.0 27.0 37.0 19.0 39.0 29 32.48187402848273 34.0 30.0 37.0 23.0 39.0 30 32.232064493392585 35.0 30.0 37.0 22.0 39.0 31 31.12447850634566 34.0 29.0 36.0 18.0 39.0 32 31.40932188642881 34.0 30.0 37.0 18.0 39.0 33 31.100980766334285 34.0 29.0 37.0 18.0 39.0 34 31.11839971455854 34.0 30.0 37.0 15.0 39.0 35 30.2825110074826 34.0 28.0 37.0 12.0 39.0 36 30.059960254616122 34.0 27.0 37.0 10.0 39.0 37 30.221344353245506 34.0 27.0 37.0 10.0 39.0 38 29.89961146620692 33.0 27.0 37.0 10.0 39.0 39 29.832557581819486 34.0 27.0 37.0 10.0 39.0 40 29.688409643592994 33.0 27.0 36.0 10.0 39.0 41 29.05280959504455 33.0 25.0 36.0 10.0 38.0 42 29.28411222879771 33.0 26.0 36.0 10.0 38.0 43 28.91677597378384 33.0 25.0 36.0 10.0 38.0 44 28.685970522904775 33.0 24.0 35.0 9.0 38.0 45 28.0424243221862 32.0 23.0 35.0 9.0 38.0 46 27.58727972239648 31.0 23.0 35.0 8.0 38.0 47 27.672899000223733 31.0 23.0 35.0 8.0 38.0 48 27.72488531892088 31.0 23.0 34.0 8.0 37.0 49 27.498229882737956 31.0 23.0 34.0 8.0 37.0 50 29.415086283163195 33.0 26.0 37.0 10.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 4.0 10 4.0 11 15.0 12 47.0 13 109.0 14 268.0 15 561.0 16 1073.0 17 2008.0 18 3358.0 19 5118.0 20 7484.0 21 10234.0 22 13720.0 23 18316.0 24 23322.0 25 29300.0 26 33966.0 27 37655.0 28 41879.0 29 49055.0 30 58485.0 31 67887.0 32 72998.0 33 72242.0 34 62545.0 35 45797.0 36 21833.0 37 4458.0 38 110.0 39 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.638980892092306 22.88576638546588 25.294763640723954 24.180489081717855 2 39.505858715250206 17.647798576594678 29.143690237521806 13.702652470633309 3 30.95811526746245 14.373410659893281 40.551112592911046 14.117361479733217 4 26.720216186812078 24.014517739923637 34.64443381837909 14.620832254885189 5 19.46295475782076 28.591671017016818 37.44152617594717 14.503848049215257 6 18.588790280952196 35.28799317982081 35.513041545478345 10.610174993748657 7 77.57368908230278 3.6196375536847833 17.02207930651763 1.7845940574948125 8 79.54911362529667 2.458715542667796 16.070997714421082 1.9211731176144582 9 67.09687608301785 2.9731535871013217 16.045846110202046 13.884124219678789 10 43.50554870710518 21.941703845709533 23.54102416747459 11.011723279710699 11 38.38968316290197 19.852658392958723 28.689791519522473 13.067866924616839 12 34.30620323373591 19.8424222749626 33.07172740340395 12.779647087897544 13 20.071711318075668 32.7631815609495 33.56978765904368 13.595319461931146 14 14.800110550074358 35.36666505813384 35.73019347725315 14.10303091453865 15 13.373049471158275 20.48291080100548 48.23975328031025 17.904286447526 16 15.032324198329173 15.23046619668262 48.1879877693013 21.54922183568691 17 15.680416697740595 16.725963035915616 36.38091812129215 31.21270214505164 18 19.366296557885978 21.475814246629028 40.755250031805076 18.40263916367991 19 26.15138048674203 22.573272326070075 32.88133560867613 18.39401157851176 20 26.903150238428434 21.060959007272032 32.89347272001439 19.142418034285146 21 21.724259453420544 24.798750608683445 35.289601712648775 18.18738822524724 22 19.949316592893503 21.107313998768742 32.68611821546443 26.25725119287332 23 17.704389686087506 27.457362912789733 33.00577755745752 21.83246984366523 24 17.202673674020584 22.726082944726425 44.1479382264902 15.923305154762794 25 18.60940874720152 21.04063300153688 40.96582160201096 19.384136649250642 26 12.680210513078102 39.993829083150914 28.409029425914632 18.916930977856353 27 15.547200933533961 29.05010287298586 36.61313176954696 18.789564423933214 28 14.420643032932517 25.178218125825286 43.77695206425942 16.62418677698277 29 15.769909615078095 23.789030683494843 41.12199551658032 19.31906418484674 30 17.708630363543044 26.076510595113277 38.612684304960275 17.602174736383404 31 27.616753893015016 23.34873137940464 31.54479105889716 17.489723668683183 32 26.76584002702335 23.611214690876547 32.019746933917084 17.603198348183017 33 25.093258346457496 23.141230644597595 30.43592701940329 21.32958398954161 34 17.576730671650193 24.78602857631684 32.27506496279171 25.362175789241252 35 18.97205978477831 23.273569027261708 34.34188341646524 23.41248777149475 36 27.790767898949042 24.352017173281393 28.49501281708203 19.362202110687534 37 18.6154041877421 29.910960396459473 30.14141928162924 21.332216134169187 38 19.767698613590934 31.81926525145024 27.352808278972233 21.060227855986593 39 19.202079979176812 28.509050921762423 28.69827287443354 23.590596224627223 40 22.756206377686432 23.60668155290684 30.990578384535855 22.64653368487087 41 18.141179464007614 22.501765730354332 32.01638363800407 27.340671167633978 42 20.031205536862455 24.954924523252807 26.806345808236564 28.207524131648178 43 19.520277018599028 24.12579896556716 28.869216044968727 27.484707970865085 44 18.753006859661358 26.09888382444765 31.742933057250607 23.40517625864038 45 18.528835875546353 32.857353846513796 26.572816087667967 22.04099419027189 46 21.723235841620934 28.43564333270454 27.891666776339356 21.949454049335166 47 20.40321531089284 25.964790678698492 28.80370488979357 24.828289120615104 48 19.512234354459217 25.49948600064634 32.80368734216272 22.18459230273173 49 19.880588372062416 25.40867701099505 32.44352221895641 22.267212397986118 50 18.911227997829943 28.76173680600948 31.50896464591074 20.818070550249836 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 320.0 1 498.5 2 677.0 3 6865.5 4 13054.0 5 10362.5 6 7671.0 7 7735.5 8 7800.0 9 8307.0 10 8814.0 11 9031.0 12 9248.0 13 9185.5 14 9123.0 15 8815.0 16 8507.0 17 8098.5 18 7690.0 19 7234.0 20 6778.0 21 6525.0 22 6272.0 23 5947.5 24 5623.0 25 5686.5 26 5750.0 27 6327.0 28 6904.0 29 7468.0 30 8032.0 31 9086.5 32 10141.0 33 11758.5 34 13376.0 35 14864.5 36 16353.0 37 17480.0 38 18607.0 39 22314.5 40 26022.0 41 34085.0 42 42148.0 43 49050.5 44 55953.0 45 58076.5 46 60200.0 47 58799.0 48 57398.0 49 56153.5 50 54909.0 51 50445.5 52 45982.0 53 40893.5 54 35805.0 55 32639.0 56 29473.0 57 26808.0 58 24143.0 59 22625.0 60 21107.0 61 18907.5 62 16708.0 63 15117.0 64 13526.0 65 11391.0 66 9256.0 67 7867.5 68 6479.0 69 5780.5 70 5082.0 71 4458.5 72 3835.0 73 3112.5 74 2390.0 75 1828.0 76 1266.0 77 968.5 78 671.0 79 494.5 80 318.0 81 261.0 82 204.0 83 164.0 84 124.0 85 87.0 86 50.0 87 38.0 88 26.0 89 20.5 90 15.0 91 10.5 92 6.0 93 6.5 94 7.0 95 6.0 96 5.0 97 4.5 98 4.0 99 2.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 683853.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.21979727147737 #Duplication Level Percentage of deduplicated Percentage of total 1 81.93758563611254 38.690761826515505 2 7.0302726241046924 6.6393609614688165 3 2.821580804922227 3.9970342078055854 4 1.5708676176085963 2.967042017752262 5 1.0300451911615942 2.431926255355531 6 0.7501472994054469 2.125308204100286 7 0.5913044681346056 1.9544893977724378 8 0.46632526173399463 1.761582745731828 9 0.3745582563358925 1.5917908437485009 >10 3.2735053658385067 30.60204864974938 >50 0.12744047979156337 3.8604350922823056 >100 0.025014841268308136 1.8426653442096037 >500 0.0010141151865530292 0.327702005514753 >1k 0.0 0.0 >5k 3.380383955176764E-4 1.2078524479932469 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7567 1.1065243553804691 No Hit TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 775 0.11332844924274663 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 713 0.10426217330332689 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.020910926763500343 0.0 2 0.0 0.0 0.0 0.09402605530720784 0.0 3 0.0 0.0 0.0 0.13701775089090784 0.0 4 0.0 0.0 0.0 0.19653346552548573 0.0 5 0.0 0.0 0.0 0.3835619643402895 0.0 6 0.0 0.0 0.0 0.5262826952576065 0.0 7 0.0 0.0 0.0 0.6176766059372409 0.0 8 0.0 0.0 0.0 0.8639283588724478 0.0 9 0.0 0.0 0.0 1.0065028595326773 0.0 10 0.0 0.0 0.0 1.2431034155001148 0.0 11 0.0 0.0 0.0 1.3916733567009285 0.0 12 0.0 0.0 0.0 1.549748264612424 0.0 13 0.0 0.0 0.0 1.6158443408159355 0.0 14 0.0 0.0 0.0 1.6398261029782717 0.0 15 0.0 0.0 0.0 1.6695108451670169 0.0 16 0.0 0.0 0.0 1.723762270546448 0.0 17 0.0 0.0 0.0 1.7983397016610294 0.0 18 0.0 0.0 0.0 1.9053802498490173 0.0 19 0.0 0.0 0.0 1.9438388074630073 0.0 20 0.0 0.0 0.0 1.9925334830731165 0.0 21 0.0 0.0 0.0 2.043860303310799 0.0 22 0.0 0.0 0.0 2.1005976430607163 0.0 23 0.0 0.0 0.0 2.160405818209469 0.0 24 0.0 0.0 0.0 2.211440177932977 0.0 25 0.0 0.0 0.0 2.2509223473465787 0.0 26 0.0 0.0 0.0 2.2924517403594047 0.0 27 0.0 0.0 0.0 2.3503589221660213 0.0 28 0.0 0.0 0.0 2.4142615445132214 0.0 29 0.0 0.0 0.0 2.4717300355485756 0.0 30 0.0 0.0 0.0 2.581110267849962 0.0 31 0.0 0.0 0.0 2.655249008193281 0.0 32 0.0 0.0 0.0 2.7184204792550446 0.0 33 0.0 0.0 0.0 2.800748113995259 0.0 34 0.0 0.0 0.0 2.8782501502515894 0.0 35 0.0 0.0 0.0 2.9847057774112273 0.0 36 0.0 0.0 0.0 3.054750070556099 0.0 37 0.0 0.0 0.0 3.1258179755005826 0.0 38 0.0 0.0 0.0 3.215310892838081 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTATGG 85 0.0 44.0 2 GTCGAAT 20 7.854243E-4 44.0 22 ACGTTAG 20 7.854243E-4 44.0 1 ACCATCG 20 7.854243E-4 44.0 13 ATTAACG 30 2.526207E-6 44.0 1 ATTCGAC 35 1.4449324E-7 44.0 27 AAGCGAT 20 7.854243E-4 44.0 44 TCGGACG 25 4.440941E-5 44.0 1 GTTCGCC 20 7.854243E-4 44.0 20 CGAATTT 25 4.440941E-5 44.0 24 TCGTAAA 20 7.854243E-4 44.0 15 CTCGATG 30 2.526207E-6 44.0 1 TTACCGC 25 4.440941E-5 44.0 33 GCGTATG 45 4.783942E-10 44.0 1 TCGAATT 20 7.854243E-4 44.0 23 AGTCGAA 20 7.854243E-4 44.0 21 CGTTTTT 8560 0.0 43.151867 1 TGTACGG 145 0.0 42.482758 2 GCGGAAT 285 0.0 41.68421 8 CGGTCTA 170 0.0 41.411766 31 >>END_MODULE