##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546081_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1727873 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.803503498231642 31.0 28.0 31.0 16.0 33.0 2 28.725093221550427 31.0 28.0 33.0 16.0 33.0 3 28.165413777517212 31.0 27.0 33.0 16.0 34.0 4 32.165192696453964 35.0 32.0 35.0 25.0 37.0 5 33.61073990970401 35.0 33.0 35.0 28.0 37.0 6 33.43200802373786 35.0 33.0 37.0 28.0 37.0 7 34.23186021194845 35.0 33.0 37.0 30.0 37.0 8 34.56228090837695 35.0 35.0 37.0 32.0 37.0 9 36.25994271569728 39.0 35.0 39.0 31.0 39.0 10 36.07383181518549 37.0 35.0 39.0 31.0 39.0 11 36.291818901041914 38.0 35.0 39.0 32.0 39.0 12 35.088849701338006 37.0 34.0 39.0 29.0 39.0 13 35.41477469698294 37.0 35.0 39.0 30.0 39.0 14 36.04276703206775 38.0 34.0 40.0 29.0 41.0 15 36.59993298118554 38.0 35.0 40.0 31.0 41.0 16 36.18626079578765 38.0 34.0 40.0 30.0 41.0 17 35.7496314833324 37.0 34.0 40.0 29.0 41.0 18 35.39217928632486 37.0 33.0 39.0 29.0 40.0 19 34.918509635835505 37.0 33.0 39.0 27.0 40.0 20 35.2375840122509 36.0 34.0 39.0 29.0 40.0 21 35.48753178040284 36.0 34.0 39.0 30.0 40.0 22 35.82395870529837 37.0 34.0 40.0 31.0 41.0 23 36.164546815651384 37.0 35.0 40.0 31.0 41.0 24 35.84263774015798 36.0 35.0 40.0 31.0 41.0 25 35.49873688633366 36.0 34.0 40.0 30.0 41.0 26 35.605403869381604 36.0 34.0 40.0 30.0 41.0 27 35.89320395654079 37.0 35.0 40.0 31.0 41.0 28 35.78998803731524 36.0 35.0 40.0 31.0 41.0 29 35.936388843393004 37.0 35.0 40.0 31.0 41.0 30 35.55087324126252 36.0 35.0 40.0 30.0 41.0 31 34.8429462119033 36.0 34.0 40.0 28.0 41.0 32 34.8051465588038 36.0 34.0 40.0 27.0 41.0 33 34.44897686346161 36.0 34.0 40.0 24.0 41.0 34 34.090081852080566 36.0 34.0 40.0 21.0 41.0 35 33.8268044005549 36.0 33.0 40.0 19.0 41.0 36 33.431416545081724 36.0 33.0 40.0 18.0 41.0 37 33.35161611993474 36.0 33.0 40.0 17.0 41.0 38 33.186263689518846 36.0 33.0 40.0 16.0 41.0 39 33.02626061058886 36.0 33.0 40.0 15.0 41.0 40 32.830916971328335 36.0 32.0 40.0 15.0 40.0 41 32.52483776296059 35.0 32.0 39.0 15.0 40.0 42 32.70595871340081 35.0 32.0 40.0 15.0 40.0 43 32.470437931491496 35.0 32.0 39.0 14.0 40.0 44 32.215375782826634 35.0 31.0 39.0 10.0 40.0 45 32.17879786303739 35.0 31.0 39.0 11.0 40.0 46 32.02324707892305 35.0 31.0 39.0 10.0 40.0 47 32.000820083420486 35.0 31.0 39.0 11.0 40.0 48 32.008773792981316 35.0 31.0 39.0 10.0 40.0 49 31.993832301332333 35.0 31.0 39.0 10.0 40.0 50 32.12230644266101 35.0 31.0 39.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 6.0 11 5.0 12 15.0 13 29.0 14 75.0 15 210.0 16 516.0 17 1151.0 18 2114.0 19 3574.0 20 5680.0 21 8058.0 22 11463.0 23 16265.0 24 23470.0 25 35354.0 26 49371.0 27 55634.0 28 53330.0 29 52344.0 30 57263.0 31 68729.0 32 89000.0 33 130556.0 34 200106.0 35 160130.0 36 168455.0 37 231095.0 38 250048.0 39 53826.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.707781185307024 21.93378795779551 26.166680074287868 23.191750782609603 2 39.186849959458826 19.57927463418897 28.342418684706573 12.89145672164563 3 28.25097677896466 18.314366854508403 40.14149188047964 13.293164486047296 4 24.998307167251298 24.53478930453801 35.8525192534405 14.614384274770195 5 20.13070405058705 27.942099911278202 37.43457997202341 14.492616066111342 6 18.57271917554126 35.23864311786804 35.47824406076141 10.710393645829294 7 72.94280308795842 5.7119938791797775 18.07349266988951 3.2717103629722786 8 73.71658680933147 4.177043104441125 18.187968675938567 3.9184014102888347 9 69.70298164274806 5.93110720521705 19.733279008353044 4.632632143681857 10 40.50390277526184 21.36163942604578 25.251450772134294 12.883007026558085 11 35.3207672091641 21.160409358789682 29.578447027067384 13.940376404978839 12 32.24912942097017 19.933177959259737 33.73291902819246 14.08477359157762 13 20.735841117952535 29.923669158555054 34.4488860003021 14.891603723190302 14 16.268904022459985 32.41418784829672 36.09507180215212 15.22183632709117 15 15.678582858809648 21.79523610820934 47.657669284721734 14.868511748259275 16 17.115204647563797 18.74206032503546 46.51811794038104 17.624617087019708 17 17.49949215017539 19.174383765473504 36.04362126151633 27.282502822834783 18 20.7004797227574 21.65078104698667 39.16306348904115 18.485675741214777 19 24.38518340178937 23.332096745536273 34.26808567527822 18.01463417739614 20 25.517500418144156 22.32704602710963 33.161985863544366 18.993467691201843 21 21.522415131204667 24.479171790982324 35.88510266668904 18.113310411123965 22 19.91841993016848 21.80825789858398 34.57858303243352 23.694739138814022 23 18.708724541676386 26.22148734310913 33.9845578928544 21.085230222360092 24 19.155748136581796 22.28861727684847 41.19185842941003 17.3637761571597 25 18.701142965947152 21.29080088640774 39.19292679496699 20.81512935267812 26 16.776753847070935 26.506461991130138 35.331589763831026 21.385194397967904 27 17.275864603474908 26.978661047426517 36.810286404151235 18.935187944947344 28 15.445811121534975 25.25243464074038 40.7640492096352 18.537705028089448 29 16.66615544082233 23.998060042607296 38.90534778887106 20.430436727699316 30 18.751030891737994 24.76183145404784 37.76336571032709 18.72377194388708 31 24.37557621422408 22.990347091481837 33.537302799453435 19.096773894840652 32 25.160356114135702 23.20228396415709 33.608488586834795 18.028871334872413 33 23.747231422679793 24.10981594133365 32.15942375394488 19.98352888204168 34 18.43908666898551 25.28142982730791 33.548761974983115 22.730721528723468 35 18.847392140510326 24.423149155059427 34.33811397018184 22.39134473424841 36 25.410895360943776 24.361917802986678 30.79190426611215 19.435282569957398 37 19.29933507844616 28.784465061957675 31.410815493962808 20.505384365633354 38 19.875766332363547 29.500316284819544 29.15729338903959 21.46662399377732 39 19.78345630726332 26.276468235802053 30.73084653791106 23.209228919023563 40 22.067073216607934 23.037804283069416 32.201324981639274 22.693797518683375 41 17.848476132215733 23.150196802658527 31.952753472043373 27.048573593082363 42 20.91988242191411 24.828908143133205 29.05502892863075 25.196180506321937 43 20.503127255301752 24.38026405875895 30.341813316140716 24.774795369798593 44 19.598720507815102 26.551314824642784 30.86337942661295 22.986585240929166 45 19.205115190757656 29.833616243786437 28.23286202168794 22.728406543767974 46 21.297514342778666 27.158651127715984 30.181732106468473 21.362102423036877 47 20.4523712101526 25.063358244500613 31.00615612374289 23.4781144216039 48 20.30045032244847 24.763220445021133 32.63573190853726 22.30059732399314 49 20.540340638461277 23.578121771681136 33.194222029049584 22.687315560808 50 19.748442159811514 26.45043935520724 31.587043723699598 22.214074761281648 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 880.0 1 1609.5 2 2339.0 3 28845.0 4 55351.0 5 38235.5 6 21120.0 7 20928.5 8 20737.0 9 21477.5 10 22218.0 11 21969.5 12 21721.0 13 20559.5 14 19398.0 15 18238.0 16 17078.0 17 16013.0 18 14948.0 19 13855.5 20 12763.0 21 12106.0 22 11449.0 23 11188.5 24 10928.0 25 11222.0 26 11516.0 27 14281.0 28 17046.0 29 17385.5 30 17725.0 31 19950.5 32 22176.0 33 26662.0 34 31148.0 35 35401.5 36 39655.0 37 45104.0 38 50553.0 39 59277.0 40 68001.0 41 90711.0 42 113421.0 43 128521.0 44 143621.0 45 145690.5 46 147760.0 47 147782.0 48 147804.0 49 148766.0 50 149728.0 51 136210.0 52 122692.0 53 106689.5 54 90687.0 55 82546.0 56 74405.0 57 72237.0 58 70069.0 59 63987.0 60 57905.0 61 49526.5 62 41148.0 63 35264.0 64 29380.0 65 23644.5 66 17909.0 67 14813.5 68 11718.0 69 9986.5 70 8255.0 71 6787.5 72 5320.0 73 4380.0 74 3440.0 75 2670.0 76 1900.0 77 1400.5 78 901.0 79 696.0 80 491.0 81 365.5 82 240.0 83 186.5 84 133.0 85 110.5 86 88.0 87 62.0 88 36.0 89 31.5 90 27.0 91 22.5 92 18.0 93 13.5 94 9.0 95 12.0 96 15.0 97 9.0 98 3.0 99 1.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1727873.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.05375690399587 #Duplication Level Percentage of deduplicated Percentage of total 1 78.43838956287718 21.22053123175006 2 7.1838685658236425 3.887012676201005 3 2.691862161477178 2.1847495360700537 4 1.5929124306344071 1.723770626709457 5 1.1061318236174942 1.496251072996066 6 0.8561594108356716 1.3897397143089953 7 0.707410802277243 1.3396683913248453 8 0.5591272370468051 1.2101193879573713 9 0.48938325247869574 1.1915689990900922 >10 5.092533809932791 30.229300157439642 >50 0.9272650968154421 17.533192301602263 >100 0.34933192740178765 13.25327404638458 >500 0.004542395939074554 0.9154050854315032 >1k 8.652182741094387E-4 0.31611700258908015 >5k 0.0 0.0 >10k+ 2.1630456852735967E-4 2.1092997701450193 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 36045 2.0860908180172966 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.08438120162766592 0.0 2 0.0 0.0 0.0 0.30552013950099344 0.0 3 0.0 0.0 0.0 0.4055274895782271 0.0 4 0.0 0.0 0.0 0.57810961801012 0.0 5 0.0 0.0 0.0 0.9799331316595606 0.0 6 0.0 0.0 0.0 1.3632367656650692 0.0 7 0.0 0.0 0.0 1.6303860295287906 0.0 8 0.0 0.0 0.0 2.270942366713294 0.0 9 0.0 0.0 0.0 2.513842163168242 0.0 10 5.787462388728801E-5 0.0 0.0 2.9210480168392006 0.0 11 1.1574924777457602E-4 0.0 0.0 3.297638194473784 0.0 12 1.7362387166186403E-4 0.0 0.0 3.599917355037089 0.0 13 2.3149849554915205E-4 0.0 0.0 3.731929372123993 0.0 14 2.3149849554915205E-4 0.0 0.0 3.7779396981143867 0.0 15 2.3149849554915205E-4 0.0 0.0 3.849472733239075 0.0 16 2.3149849554915205E-4 0.0 0.0 4.025353715232543 0.0 17 2.3149849554915205E-4 0.0 0.0 4.228898767444135 0.0 18 2.8937311943644006E-4 0.0 0.0 4.542637103537124 0.0 19 2.8937311943644006E-4 0.0 0.0 4.666430924032032 0.0 20 2.8937311943644006E-4 0.0 0.0 4.809612743529183 0.0 21 2.8937311943644006E-4 0.0 0.0 4.99278592813245 0.0 22 2.8937311943644006E-4 0.0 0.0 5.168146038510932 0.0 23 2.8937311943644006E-4 0.0 0.0 5.3696076042625815 0.0 24 2.8937311943644006E-4 0.0 0.0 5.521702115838375 0.0 25 2.8937311943644006E-4 0.0 0.0 5.642023458900047 0.0 26 2.8937311943644006E-4 0.0 0.0 5.7644861630455475 0.0 27 2.8937311943644006E-4 0.0 0.0 5.902054144025631 0.0 28 5.208716149855921E-4 0.0 0.0 6.038696131023518 0.0 29 5.208716149855921E-4 0.0 0.0 6.184366559347822 0.0 30 5.208716149855921E-4 0.0 0.0 6.362851899416219 0.0 31 5.208716149855921E-4 0.0 0.0 6.5273894551277785 0.0 32 5.208716149855921E-4 0.0 0.0 6.677921351858615 0.0 33 5.787462388728801E-4 0.0 0.0 6.836439946685896 0.0 34 5.787462388728801E-4 0.0 0.0 6.99513216538484 0.0 35 5.787462388728801E-4 0.0 0.0 7.18571330184568 0.0 36 5.787462388728801E-4 0.0 0.0 7.336708195567614 0.0 37 5.787462388728801E-4 0.0 0.0 7.495053166523234 0.0 38 6.366208627601682E-4 0.0 0.0 7.6748117483171505 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACCGTTG 30 2.5284608E-6 44.0 1 TTACCCG 20 7.8575837E-4 44.0 32 ACGCGGT 25 4.443774E-5 44.0 34 CGTTTTT 21705 0.0 43.118176 1 CGACGGT 360 0.0 42.77778 28 CGGTCTA 345 0.0 42.72464 31 TCACGAC 355 0.0 40.90141 25 GACACGA 135 0.0 40.74074 25 CGTAAGG 180 0.0 40.333332 2 ACGGTCT 370 0.0 39.837837 30 ACGTAAG 45 2.3521352E-8 39.11111 1 GTTTTTT 24715 0.0 38.935062 2 AACGGGC 170 0.0 38.823532 4 GGCGATA 460 0.0 38.739132 8 CTCACGA 370 0.0 38.648647 24 CAATTCG 40 4.126141E-7 38.5 12 TAGGGTA 750 0.0 38.42667 5 GGGCGAT 1625 0.0 38.313847 7 TCGTAAG 70 0.0 37.714287 1 ACGACGG 380 0.0 37.63158 27 >>END_MODULE