##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546077_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 795169 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.028343660278505 31.0 28.0 33.0 23.0 33.0 2 28.763609999886818 31.0 28.0 33.0 16.0 33.0 3 28.20122389077039 31.0 27.0 33.0 16.0 34.0 4 32.14254076806314 35.0 32.0 35.0 25.0 37.0 5 33.65778847012396 35.0 33.0 35.0 28.0 37.0 6 33.46115479853968 35.0 33.0 37.0 28.0 37.0 7 34.40339097726395 35.0 35.0 37.0 31.0 37.0 8 34.86336489475822 35.0 35.0 37.0 32.0 37.0 9 36.681018751988574 39.0 37.0 39.0 32.0 39.0 10 36.264175288523575 38.0 35.0 39.0 31.0 39.0 11 36.3036624918728 38.0 35.0 39.0 31.0 39.0 12 35.189161046268154 37.0 34.0 39.0 29.0 39.0 13 35.59800117962345 37.0 35.0 39.0 30.0 39.0 14 36.314758246360206 38.0 35.0 40.0 30.0 41.0 15 36.825403153291944 38.0 35.0 40.0 31.0 41.0 16 36.443865392136765 38.0 35.0 40.0 31.0 41.0 17 36.04648445802087 38.0 34.0 40.0 30.0 41.0 18 35.63570008388154 38.0 34.0 39.0 29.0 41.0 19 35.13611823398548 37.0 34.0 39.0 27.0 41.0 20 35.52111060667607 36.0 34.0 39.0 30.0 41.0 21 35.74867606760324 37.0 34.0 39.0 31.0 41.0 22 36.05970554687117 37.0 35.0 40.0 31.0 41.0 23 36.36802239523925 37.0 35.0 40.0 32.0 41.0 24 36.04856326139475 37.0 35.0 40.0 31.0 41.0 25 35.673104711074 36.0 34.0 40.0 30.0 41.0 26 35.80493706369338 37.0 34.0 40.0 31.0 41.0 27 36.087674444049 37.0 35.0 40.0 31.0 41.0 28 36.02834366027851 37.0 35.0 40.0 31.0 41.0 29 36.15761806609664 37.0 35.0 40.0 31.0 41.0 30 35.78525068255931 37.0 35.0 40.0 30.0 41.0 31 35.07908255980804 36.0 34.0 40.0 29.0 41.0 32 35.002897497261586 37.0 34.0 40.0 27.0 41.0 33 34.67937130345876 37.0 34.0 40.0 24.0 41.0 34 34.34671749024421 37.0 34.0 40.0 22.0 41.0 35 34.04963598933057 37.0 34.0 40.0 20.0 41.0 36 33.64196038829481 37.0 33.0 40.0 18.0 41.0 37 33.55645026403192 37.0 33.0 40.0 17.0 41.0 38 33.38892612765337 37.0 33.0 40.0 16.0 41.0 39 33.19111912058946 36.0 33.0 40.0 15.0 41.0 40 33.03145872135357 36.0 33.0 40.0 15.0 41.0 41 32.72308276605351 36.0 32.0 40.0 15.0 40.0 42 32.88210304979193 36.0 33.0 40.0 14.0 40.0 43 32.67117807661013 36.0 32.0 40.0 12.0 40.0 44 32.43129070675542 35.0 32.0 39.0 10.0 40.0 45 32.41644606366697 35.0 32.0 39.0 10.0 40.0 46 32.2498060160796 35.0 31.0 39.0 10.0 40.0 47 32.23000770905304 35.0 31.0 39.0 10.0 40.0 48 32.251683604365866 35.0 32.0 39.0 10.0 40.0 49 32.2287928729616 35.0 31.0 39.0 10.0 40.0 50 32.434355464058584 35.0 32.0 39.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 1.0 11 7.0 12 5.0 13 16.0 14 32.0 15 106.0 16 216.0 17 396.0 18 914.0 19 1570.0 20 2374.0 21 3590.0 22 5125.0 23 7314.0 24 10629.0 25 15920.0 26 22575.0 27 24950.0 28 23206.0 29 22153.0 30 23576.0 31 28858.0 32 37868.0 33 56403.0 34 87480.0 35 71277.0 36 79225.0 37 112804.0 38 128748.0 39 27829.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.303000997272274 22.642608049358063 27.4556729449966 22.598718008373062 2 37.598925511432164 20.48709142333265 29.500395513406584 12.413587551828604 3 27.416436002912587 18.743562689189343 41.14295200139845 12.697049306499625 4 24.719525031785697 24.694498905264165 37.157006875268024 13.428969187682116 5 20.023290646390894 29.54051277149889 37.612130251556586 12.824066330553629 6 18.509901668701872 36.62856575143146 34.804928260533295 10.056604319333374 7 77.2443342232909 4.310907492621065 16.289744695781653 2.1550135883063852 8 78.97478397673953 2.8690756304634615 16.0017556016394 2.1543847911576033 9 75.20552234807947 4.804890532704369 16.89175508602574 3.0978320331904285 10 40.099274493849734 26.847877620983716 22.81691061900049 10.23593726616606 11 33.460811475296445 21.038672282244402 32.50051246967626 13.000003772782891 12 30.824642308741918 20.97730168052326 34.06860679930933 14.129449211425497 13 20.02832102358115 30.485846404978062 34.612516333005935 14.873316238434848 14 16.33853935452715 32.31250212219038 35.92393566650611 15.425022856776357 15 15.062961458507562 22.58903453228182 46.894936799598575 15.453067209612046 16 17.631849330142398 19.90847228702326 45.25465655728531 17.205021825549036 17 17.873307435274764 19.49107673966163 36.38056815595176 26.255047669111846 18 19.97990364312492 22.086499850975073 39.51436738605253 18.41922911984748 19 24.21535547789212 22.651159690581498 34.721298239745266 18.41218659178112 20 25.51885196731764 22.65040513400296 33.811051487168136 18.019691411511264 21 20.877574452726403 24.927405369173094 36.428608258118715 17.76641191998179 22 20.546324114747936 21.316852140865652 35.31576306420396 22.821060680182452 23 18.231344531791354 25.57292852211291 34.999226579506995 21.19650036658874 24 17.794833551106745 22.826971373381006 42.381556625069635 16.99663845044261 25 17.53991918699044 23.510599633537023 40.052114707691075 18.89736647178147 26 17.091838338768238 28.78658499010902 35.151395489512296 18.97018118161045 27 16.969851691904488 28.24016026781728 36.439046290788504 18.35094174948973 28 15.660947546999443 25.44666605463744 41.530542563907794 17.361843834455318 29 16.4703352369119 23.365221732738576 40.526982314451395 19.63746071589813 30 18.579572392786943 26.103633315685094 37.629862331152246 17.686931960375716 31 24.724303890116442 24.115502490665506 33.69648464666002 17.463708972558035 32 25.08510769408767 24.34928927058273 33.28411947648864 17.28148355884095 33 24.348031676285167 24.828055419665503 32.41600213287993 18.4079107711694 34 19.77856279608486 24.95582700029805 33.46458425818914 21.801025945427956 35 19.56791575124282 25.47923774694436 34.43884256051229 20.51400394130053 36 25.72170192751478 25.226712811993423 30.51703474355766 18.534550516934136 37 20.16049418425517 29.521900375894933 31.337615022718442 18.979990417131454 38 20.967492445002257 29.388846899212623 29.614082037906407 20.029578617878716 39 20.688054992083444 28.206582500072315 29.949985474785862 21.155377033058382 40 23.37943254830105 25.39900323075975 29.958411356579546 21.263152864359654 41 19.59231308061557 24.29634455065527 30.853189699296628 25.258152669432537 42 21.229449337184924 25.457607125026254 28.50903392863655 24.80390960915227 43 21.018425014053616 25.504766911184916 29.572832944946292 23.903975129815173 44 19.633687933005437 28.008134119916644 30.877838547528892 21.480339399549024 45 18.37144053654003 31.598817358322574 28.17702903407955 21.85271307105785 46 20.910900701611858 29.28459233194453 29.407207775957062 20.39729919048655 47 20.89731868319816 26.0481734071625 30.461826353894583 22.592681555744754 48 21.01402343401214 25.353729836047435 32.39185632236669 21.240390407573738 49 20.227775479174866 24.91545822334623 33.0099639196196 21.846802377859298 50 19.519246851927075 29.018359619150143 30.822504398436056 20.639889130486726 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 253.0 1 644.0 2 1035.0 3 10977.5 4 20920.0 5 15188.0 6 9456.0 7 9544.5 8 9633.0 9 10102.5 10 10572.0 11 10582.0 12 10592.0 13 10212.0 14 9832.0 15 9176.5 16 8521.0 17 7984.0 18 7447.0 19 6956.5 20 6466.0 21 6115.0 22 5764.0 23 5681.0 24 5598.0 25 5784.5 26 5971.0 27 7100.0 28 8229.0 29 9079.0 30 9929.0 31 11818.0 32 13707.0 33 16403.5 34 19100.0 35 21236.5 36 23373.0 37 25804.5 38 28236.0 39 33056.5 40 37877.0 41 45872.5 42 53868.0 43 61170.0 44 68472.0 45 69588.0 46 70704.0 47 68649.5 48 66595.0 49 64290.5 50 61986.0 51 56557.5 52 51129.0 53 45903.0 54 40677.0 55 36666.5 56 32656.0 57 29686.0 58 26716.0 59 23997.0 60 21278.0 61 18325.5 62 15373.0 63 13225.5 64 11078.0 65 9579.0 66 8080.0 67 6551.5 68 5023.0 69 4250.0 70 3477.0 71 2898.0 72 2319.0 73 1870.0 74 1421.0 75 1143.0 76 865.0 77 653.5 78 442.0 79 334.5 80 227.0 81 172.5 82 118.0 83 98.0 84 78.0 85 57.0 86 36.0 87 27.0 88 18.0 89 13.0 90 8.0 91 6.5 92 5.0 93 3.5 94 2.0 95 4.5 96 7.0 97 3.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 795169.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.11077336161261 #Duplication Level Percentage of deduplicated Percentage of total 1 75.53450751973844 24.254714519473445 2 7.420297136064187 4.765429592239605 3 3.4991748481358846 3.370836315034398 4 2.1639641600918234 2.779462508294437 5 1.5233136794358728 2.4457390159504757 6 1.1096109555119735 2.1378279547204433 7 0.8745673920109982 1.965812472002524 8 0.7411890179187084 1.90401220580031 9 0.621443629242583 1.7959531982063939 >10 5.980317987430279 40.770675370747924 >50 0.4890530544228273 9.987713062485115 >100 0.041378380552105416 1.9252111471317896 >500 7.881596295639125E-4 0.18778844106372916 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 3.9407981478195624E-4 1.7088241968494597 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13504 1.6982553394309887 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.024648848232262575 0.0 2 0.0 0.0 0.0 0.10350001068955153 0.0 3 0.0 0.0 0.0 0.14600669794722884 0.0 4 0.0 0.0 0.0 0.22033052093328587 0.0 5 1.2575942975644172E-4 0.0 0.0 0.4000407460552411 0.0 6 1.2575942975644172E-4 0.0 0.0 0.5667977499122828 0.0 7 1.2575942975644172E-4 0.0 0.0 0.6900419910735957 0.0 8 1.2575942975644172E-4 0.0 0.0 0.9664612176782545 0.0 9 1.2575942975644172E-4 0.0 0.0 1.0951131143190944 0.0 10 1.2575942975644172E-4 0.0 0.0 1.3149405975333546 0.0 11 3.772782892693251E-4 0.0 0.0 1.511502586242673 0.0 12 3.772782892693251E-4 0.0 0.0 1.6815293352733822 0.0 13 3.772782892693251E-4 0.0 0.0 1.748433351903809 0.0 14 3.772782892693251E-4 0.0 0.0 1.7753458698716877 0.0 15 3.772782892693251E-4 0.0 0.0 1.8168464816913135 0.0 16 3.772782892693251E-4 0.0 0.0 1.911794851157427 0.0 17 3.772782892693251E-4 0.0 0.0 2.033404219731906 0.0 18 3.772782892693251E-4 0.0 0.0 2.1981490727128445 0.0 19 3.772782892693251E-4 0.0 0.0 2.2821563717901476 0.0 20 3.772782892693251E-4 0.0 0.0 2.3669182274459897 0.0 21 3.772782892693251E-4 0.0 0.0 2.477838044491171 0.0 22 3.772782892693251E-4 0.0 0.0 2.6057353845534723 0.0 23 3.772782892693251E-4 0.0 0.0 2.7379085452274925 0.0 24 5.030377190257669E-4 0.0 0.0 2.844929819950224 0.0 25 5.030377190257669E-4 0.0 0.0 2.927553765300207 0.0 26 5.030377190257669E-4 0.0 0.0 3.015711125559472 0.0 27 5.030377190257669E-4 0.0 0.0 3.1068867121328925 0.0 28 6.287971487822085E-4 0.0 0.0 3.2008290061609546 0.0 29 6.287971487822085E-4 0.0 0.0 3.3068442054456346 0.0 30 6.287971487822085E-4 0.0 0.0 3.441532554714784 0.0 31 6.287971487822085E-4 0.0 0.0 3.5617585695619423 0.0 32 6.287971487822085E-4 0.0 0.0 3.671420792309559 0.0 33 6.287971487822085E-4 0.0 0.0 3.7890058591318323 0.0 34 7.545565785386502E-4 0.0 0.0 3.910740987136068 0.0 35 8.80316008295092E-4 0.0 0.0 4.059514392537938 0.0 36 8.80316008295092E-4 0.0 0.0 4.18565110058365 0.0 37 8.80316008295092E-4 0.0 0.0 4.313296921786438 0.0 38 8.80316008295092E-4 0.0 0.0 4.46307640262636 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGAC 110 0.0 44.0 25 GTATTCG 20 7.855016E-4 44.0 9 TAGCCGT 20 7.855016E-4 44.0 44 TTATACG 25 4.4415985E-5 44.0 1 CCGTAGA 20 7.855016E-4 44.0 13 TATTACG 30 2.526729E-6 44.0 1 TATCGCG 25 4.4415985E-5 44.0 1 TGTCGCG 20 7.855016E-4 44.0 1 CGTTTTT 10275 0.0 43.143555 1 CGACGGT 110 0.0 42.0 28 CGGTCTA 110 0.0 42.0 31 CGTAAGG 145 0.0 40.965515 2 TCGACGG 55 7.8216544E-11 40.0 2 AGGGCGC 155 0.0 39.741936 6 TCGACAG 50 1.3460522E-9 39.6 1 GCGATAT 95 0.0 39.36842 9 ACGTAAG 45 2.3494067E-8 39.11111 1 GGCGATA 300 0.0 38.866665 8 GTTTTTT 11700 0.0 38.82906 2 ATGCGAG 85 0.0 38.823532 1 >>END_MODULE