##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546076_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 795374 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.017579151443222 31.0 28.0 33.0 23.0 33.0 2 28.731333938499372 31.0 28.0 33.0 16.0 33.0 3 28.211119548790883 31.0 27.0 33.0 16.0 34.0 4 32.13409037760852 35.0 32.0 35.0 25.0 37.0 5 33.6966936309208 35.0 33.0 35.0 28.0 37.0 6 33.568447045037935 35.0 33.0 37.0 28.0 37.0 7 34.46648872102935 35.0 35.0 37.0 32.0 37.0 8 34.90387918136625 35.0 35.0 37.0 32.0 37.0 9 36.802911586247475 39.0 37.0 39.0 32.0 39.0 10 36.26315167455813 38.0 35.0 39.0 31.0 39.0 11 36.36308327906117 38.0 35.0 39.0 32.0 39.0 12 35.14287869605997 37.0 34.0 39.0 29.0 39.0 13 35.59767857636785 37.0 35.0 39.0 30.0 39.0 14 36.328023043247576 38.0 35.0 40.0 30.0 41.0 15 36.85706598405279 38.0 35.0 40.0 32.0 41.0 16 36.4814326342073 38.0 35.0 40.0 31.0 41.0 17 36.10205513381126 38.0 34.0 40.0 30.0 41.0 18 35.72816310314393 38.0 34.0 39.0 29.0 41.0 19 35.213915717637235 37.0 34.0 39.0 28.0 41.0 20 35.50363351077606 36.0 34.0 39.0 30.0 41.0 21 35.65431734001866 36.0 34.0 39.0 30.0 40.0 22 36.048624923620835 37.0 35.0 40.0 31.0 41.0 23 36.4024622378906 37.0 35.0 40.0 32.0 41.0 24 35.97004302378504 37.0 35.0 40.0 31.0 41.0 25 35.60915493843148 36.0 34.0 40.0 30.0 41.0 26 35.78600381707222 37.0 34.0 40.0 31.0 41.0 27 36.119713493274865 37.0 35.0 40.0 31.0 41.0 28 36.05267710536175 37.0 35.0 40.0 31.0 41.0 29 36.201154425465255 37.0 35.0 40.0 31.0 41.0 30 35.84164808002273 37.0 35.0 40.0 31.0 41.0 31 35.128958200796106 36.0 34.0 40.0 29.0 41.0 32 35.091561957016445 37.0 34.0 40.0 28.0 41.0 33 34.7888238740517 37.0 34.0 40.0 25.0 41.0 34 34.37190554380707 37.0 34.0 40.0 22.0 41.0 35 34.10572007634144 37.0 34.0 40.0 20.0 41.0 36 33.68638024375954 37.0 33.0 40.0 18.0 41.0 37 33.59906785989987 37.0 33.0 40.0 18.0 41.0 38 33.474028570207224 37.0 33.0 40.0 17.0 41.0 39 33.234426823104606 36.0 33.0 40.0 15.0 41.0 40 33.049615652510646 36.0 33.0 40.0 15.0 41.0 41 32.74455916336214 36.0 32.0 40.0 15.0 40.0 42 32.920222436237545 36.0 33.0 40.0 15.0 40.0 43 32.72246515475739 36.0 32.0 40.0 14.0 40.0 44 32.472511045118395 35.0 32.0 39.0 10.0 40.0 45 32.44729146288413 35.0 32.0 39.0 11.0 40.0 46 32.26521862670894 35.0 31.0 39.0 10.0 40.0 47 32.24804431625876 35.0 31.0 39.0 10.0 40.0 48 32.26836808847159 35.0 32.0 39.0 10.0 40.0 49 32.30268653488799 35.0 32.0 39.0 11.0 40.0 50 32.53514070110413 35.0 32.0 39.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 1.0 12 6.0 13 11.0 14 17.0 15 69.0 16 174.0 17 431.0 18 832.0 19 1430.0 20 2170.0 21 3454.0 22 4818.0 23 7079.0 24 10475.0 25 16082.0 26 22413.0 27 24982.0 28 23178.0 29 21940.0 30 23070.0 31 28197.0 32 37521.0 33 56945.0 34 88184.0 35 71112.0 36 79560.0 37 116319.0 38 130028.0 39 24874.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.299735721811373 22.597545305730385 27.499138769937158 22.60358020252108 2 37.655367160606204 20.479296532197434 29.406040428779416 12.459295878416945 3 27.50806538810673 18.653111617930684 41.23720413289848 12.601618861064104 4 24.56869346999022 24.703724285681954 37.18803984037698 13.539542403950847 5 19.9884582598878 29.717340521565955 37.533034773578215 12.761166444968028 6 18.456474564167298 36.707888364467536 34.81154777500899 10.02408929635618 7 77.30841088594799 4.295086336742212 16.26555557511309 2.1309472021967024 8 79.06846338955008 2.8537518198985636 15.967582546072665 2.110202244478698 9 75.37586091574529 4.740662883121651 16.891550390130934 2.99192581100212 10 40.16248959608939 26.519222403548522 22.753069625107184 10.565218375254911 11 33.498077633918136 20.97742697146248 32.4715165444181 13.052978850201288 12 30.836436695189935 20.561144819921196 33.959872965422555 14.642545519466314 13 19.959289592066124 30.487418497461572 34.60875009743844 14.944541813033869 14 16.364754191110094 32.27500521767118 35.84590393953033 15.514336651688387 15 15.105095213069575 22.52713817650564 46.91792791818691 15.449838692237867 16 17.55212013467878 20.009454671638753 45.20829194819041 17.23013324549206 17 17.953315044243336 19.448586451153798 36.338125209021165 26.259973295581702 18 20.087153967818914 22.0677316583142 39.378958829431184 18.4661555444357 19 24.16196657170086 22.723900957285505 34.68657512063507 18.427557350378564 20 25.515543631046526 22.37098522204648 33.826979509010854 18.286491637896134 21 20.834098172683543 24.890303178127525 36.44939361859955 17.826205030589385 22 20.49840703870129 21.360265736622015 35.336332341766266 22.804994882910428 23 18.169062604510582 25.555650549301333 34.99888102955339 21.276405816634693 24 17.823564763243454 22.791542092147846 42.28539026923183 17.099502875376867 25 17.543319243525687 23.458901095585222 40.08328157571155 18.914498085177538 26 16.99150336822677 28.80443665495729 35.19187199983907 19.01218797697687 27 16.995275178720952 28.227098195314404 36.44713053230304 18.330496093661598 28 15.617307078179573 25.449034039332442 41.587479600791575 17.346179281696408 29 16.533354120200055 23.384219247800406 40.51980577690495 19.562620855094583 30 18.534928222446297 26.13173173877949 37.743753253186554 17.58958678558766 31 24.692283127182936 24.179442626990575 33.58897826682794 17.53929597899856 32 24.96875683640652 24.29888329263969 33.31376182776907 17.418598043184716 33 24.325285966098967 24.89005172409458 32.368168936877495 18.41649337292896 34 19.86700596197512 24.902750152758323 33.43621994181354 21.794023943453016 35 19.73914158622233 25.390948157722026 34.46240385026415 20.40750640579149 36 25.738206177219773 25.21530751570959 30.494082029334628 18.55240427773601 37 20.17201970393802 29.58507570023662 31.386618119274708 18.856286476550654 38 20.98019296582488 29.45218224382492 29.677987965409987 19.889636824940215 39 20.789967989901605 28.146632904771845 29.978852715829284 21.08454638949727 40 23.28175172937511 25.422882819906107 29.97684108356572 21.318524367153064 41 19.669111638047006 24.286059136959466 30.81481164835662 25.230017576636904 42 21.27628008961822 25.42388863603789 28.5044519936533 24.795379280690593 43 21.052988908362607 25.514286360881798 29.6280743398703 23.804650390885293 44 19.560232041781603 28.012482178195413 30.868748538423436 21.55853724159955 45 18.299441520592826 31.807929351474908 28.147261539854206 21.74536758807806 46 20.893064143409266 29.355623895173842 29.291000208706848 20.460311752710044 47 20.855848946533328 26.08911028019523 30.488172859560407 22.566867913711032 48 21.088318199991452 25.287097642115537 32.41695101926892 21.207633138624093 49 20.28429392964819 24.88967454304516 33.10467779937489 21.721353727931767 50 19.54049290019538 29.09008843638339 30.85391275047965 20.515505912941585 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 265.0 1 622.0 2 979.0 3 11211.0 4 21443.0 5 15462.5 6 9482.0 7 9475.0 8 9468.0 9 9904.0 10 10340.0 11 10357.0 12 10374.0 13 10007.0 14 9640.0 15 9070.5 16 8501.0 17 7942.5 18 7384.0 19 7033.5 20 6683.0 21 6170.5 22 5658.0 23 5570.5 24 5483.0 25 5745.0 26 6007.0 27 7034.5 28 8062.0 29 8911.5 30 9761.0 31 11880.5 32 14000.0 33 16622.5 34 19245.0 35 21242.0 36 23239.0 37 25719.0 38 28199.0 39 32903.0 40 37607.0 41 45601.5 42 53596.0 43 61333.0 44 69070.0 45 70052.0 46 71034.0 47 68616.0 48 66198.0 49 64193.5 50 62189.0 51 56678.5 52 51168.0 53 46028.5 54 40889.0 55 36897.5 56 32906.0 57 29768.5 58 26631.0 59 23750.5 60 20870.0 61 18212.0 62 15554.0 63 13418.0 64 11282.0 65 9611.5 66 7941.0 67 6551.5 68 5162.0 69 4248.0 70 3334.0 71 2850.5 72 2367.0 73 1940.5 74 1514.0 75 1192.0 76 870.0 77 672.5 78 475.0 79 360.5 80 246.0 81 182.0 82 118.0 83 101.0 84 84.0 85 53.5 86 23.0 87 20.0 88 17.0 89 10.0 90 3.0 91 5.5 92 8.0 93 5.0 94 2.0 95 1.5 96 1.0 97 1.5 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 795374.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.96197945353075 #Duplication Level Percentage of deduplicated Percentage of total 1 75.38427673525021 24.09430704131343 2 7.508852235125831 4.799955617173804 3 3.4587243017965577 3.3164302520834723 4 2.1830482416655665 2.7909817218472512 5 1.5079032673039263 2.409778662373999 6 1.154832252185925 2.2146434829984707 7 0.9443557649940161 2.1128435690293443 8 0.7111191702529651 1.8183021046909684 9 0.5975136813236251 1.7187948005102303 >10 6.0138725591493385 40.86722625031804 >50 0.49342381510395683 10.014141962820286 >100 0.040887089739151526 1.9105127288394725 >500 7.939240726048839E-4 0.18841223285473607 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 3.9696203630244195E-4 1.7436695731465575 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13743 1.727866387385054 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.02577403837691451 0.0 2 0.0 0.0 0.0 0.09391808130514702 0.0 3 0.0 0.0 0.0 0.13239054834580966 0.0 4 0.0 0.0 0.0 0.20996411750949867 0.0 5 0.0 0.0 0.0 0.38824502686786344 0.0 6 0.0 0.0 0.0 0.5636342148473549 0.0 7 0.0 0.0 0.0 0.6745254433763236 0.0 8 0.0 0.0 0.0 0.953513692929364 0.0 9 0.0 0.0 0.0 1.077606258187972 0.0 10 0.0 0.0 0.0 1.2912164591751805 0.0 11 1.257270164727537E-4 0.0 0.0 1.4825729782467116 0.0 12 1.257270164727537E-4 0.0 0.0 1.6538131746826021 0.0 13 1.257270164727537E-4 0.0 0.0 1.7159223208201424 0.0 14 2.514540329455074E-4 0.0 0.0 1.740690543065275 0.0 15 3.771810494182611E-4 0.0 0.0 1.7777800129247372 0.0 16 3.771810494182611E-4 0.0 0.0 1.8694350079333748 0.0 17 5.029080658910148E-4 0.0 0.0 1.987744130434236 0.0 18 5.029080658910148E-4 0.0 0.0 2.157098421623035 0.0 19 5.029080658910148E-4 0.0 0.0 2.2359292609514516 0.0 20 6.286350823637685E-4 0.0 0.0 2.327835709993035 0.0 21 6.286350823637685E-4 0.0 0.0 2.436841033274912 0.0 22 7.543620988365221E-4 0.0 0.0 2.5601792364346836 0.0 23 7.543620988365221E-4 0.0 0.0 2.69470714406053 0.0 24 7.543620988365221E-4 0.0 0.0 2.8001921108811705 0.0 25 7.543620988365221E-4 0.0 0.0 2.883926303852024 0.0 26 7.543620988365221E-4 0.0 0.0 2.9670318617405145 0.0 27 7.543620988365221E-4 0.0 0.0 3.0542864111726056 0.0 28 8.800891153092759E-4 0.0 0.0 3.149084581593062 0.0 29 8.800891153092759E-4 0.0 0.0 3.2529350971995563 0.0 30 0.0011315431482547833 0.0 0.0 3.382936832232384 0.0 31 0.0011315431482547833 0.0 0.0 3.5004915926344085 0.0 32 0.0011315431482547833 0.0 0.0 3.604342108240903 0.0 33 0.0011315431482547833 0.0 0.0 3.726297314219474 0.0 34 0.0011315431482547833 0.0 0.0 3.8472467040662632 0.0 35 0.0011315431482547833 0.0 0.0 3.9997535750477136 0.0 36 0.0011315431482547833 0.0 0.0 4.116302519317956 0.0 37 0.0013829971812002906 0.0 0.0 4.238760633362419 0.0 38 0.0013829971812002906 0.0 0.0 4.38674133175085 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACTCTCG 20 7.855018E-4 44.0 27 ATCGTAG 20 7.855018E-4 44.0 1 CCGTAGG 20 7.855018E-4 44.0 2 CGGTATC 20 7.855018E-4 44.0 24 ATACCGG 20 7.855018E-4 44.0 2 GTAGACG 35 1.4453326E-7 43.999996 1 CGTTTTT 10090 0.0 43.345886 1 CGGTCTA 105 0.0 41.904762 31 TTGTACG 70 0.0 40.85714 1 GTAGGGT 235 0.0 40.255318 4 ACGGTCT 110 0.0 40.000004 30 GGCGATA 250 0.0 39.599995 8 GCGATAT 95 0.0 39.36842 9 GTTTTTT 11410 0.0 39.21823 2 CGACCCG 160 0.0 38.5 32 TATGGGC 225 0.0 38.13333 4 GCGGGTA 75 0.0 38.13333 5 AAGGGAT 1020 0.0 37.745094 5 ACCCGCT 170 0.0 37.52941 34 ATAAGCG 100 0.0 37.399998 33 >>END_MODULE