##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546075_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 781731 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.89418482828492 31.0 28.0 33.0 19.0 33.0 2 28.62804084781082 31.0 28.0 33.0 16.0 33.0 3 28.094664277097877 31.0 26.0 33.0 16.0 34.0 4 32.03302158926792 35.0 32.0 35.0 25.0 37.0 5 33.63508419136506 35.0 33.0 35.0 28.0 37.0 6 33.504851413081994 35.0 33.0 37.0 28.0 37.0 7 34.390003722508126 35.0 35.0 37.0 32.0 37.0 8 34.86685701347395 35.0 35.0 37.0 32.0 37.0 9 36.77284513470747 39.0 37.0 39.0 32.0 39.0 10 36.333412644503035 38.0 35.0 39.0 32.0 39.0 11 36.36439644839465 38.0 35.0 39.0 32.0 39.0 12 35.300013687572836 37.0 34.0 39.0 30.0 39.0 13 35.667394538530516 37.0 35.0 39.0 30.0 39.0 14 36.38439565528296 38.0 35.0 40.0 30.0 41.0 15 36.814468148250484 38.0 35.0 40.0 31.0 41.0 16 36.43215888841558 38.0 35.0 40.0 31.0 41.0 17 36.05150876708228 38.0 34.0 40.0 30.0 41.0 18 35.65170116062942 38.0 34.0 39.0 29.0 40.0 19 35.09596779454825 37.0 33.0 39.0 27.0 41.0 20 35.58344366540408 36.0 34.0 39.0 30.0 41.0 21 35.742053212678016 37.0 34.0 39.0 31.0 41.0 22 36.06549695483485 37.0 35.0 40.0 31.0 41.0 23 36.39043865472906 37.0 35.0 40.0 32.0 41.0 24 35.97074441208037 37.0 35.0 40.0 31.0 41.0 25 35.619454774084694 36.0 34.0 40.0 30.0 41.0 26 35.78287927688681 37.0 34.0 40.0 31.0 41.0 27 36.11384350882849 37.0 35.0 40.0 31.0 41.0 28 36.05617021712072 37.0 35.0 40.0 31.0 41.0 29 36.18840112519524 37.0 35.0 40.0 31.0 41.0 30 35.829848119110025 37.0 35.0 40.0 30.0 41.0 31 35.100450154848666 36.0 34.0 40.0 29.0 41.0 32 35.070154567236045 37.0 34.0 40.0 28.0 41.0 33 34.782907419559926 37.0 34.0 40.0 25.0 41.0 34 34.37770665356753 37.0 34.0 40.0 22.0 41.0 35 34.08096135371375 37.0 34.0 40.0 20.0 41.0 36 33.69395994274245 37.0 33.0 40.0 18.0 41.0 37 33.640403156584554 37.0 33.0 40.0 18.0 41.0 38 33.49580482288665 37.0 33.0 40.0 17.0 41.0 39 33.224866354282995 36.0 33.0 40.0 15.0 41.0 40 33.080688881469456 36.0 33.0 40.0 15.0 41.0 41 32.75893369969977 36.0 32.0 40.0 15.0 40.0 42 32.95782820433116 36.0 33.0 40.0 15.0 41.0 43 32.77531017703021 36.0 33.0 40.0 14.0 40.0 44 32.544188474040304 36.0 32.0 40.0 10.0 40.0 45 32.52846951189092 35.0 32.0 40.0 11.0 40.0 46 32.351600486612405 35.0 31.0 39.0 10.0 40.0 47 32.33410981526894 35.0 32.0 39.0 10.0 40.0 48 32.33056383845594 35.0 32.0 39.0 10.0 40.0 49 32.36755354463364 35.0 32.0 39.0 10.0 40.0 50 32.525737114173545 35.0 32.0 39.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 5.0 13 8.0 14 30.0 15 63.0 16 176.0 17 450.0 18 837.0 19 1420.0 20 2292.0 21 3393.0 22 4922.0 23 7072.0 24 10358.0 25 15912.0 26 22335.0 27 24400.0 28 22451.0 29 21675.0 30 23078.0 31 27642.0 32 36638.0 33 55493.0 34 86743.0 35 69023.0 36 77440.0 37 111379.0 38 128580.0 39 27915.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.30824286103532 22.519255344869272 27.469295704020947 22.703206090074463 2 37.69276132071007 20.33653520200683 29.510662875081067 12.460040602202037 3 27.582250160221356 18.765662357000043 41.078836581893256 12.573250900885343 4 24.602580683125012 24.71502345435962 37.06390049774156 13.618495364773816 5 19.935118346336527 29.582298770293107 37.61217093859652 12.87041194477384 6 18.43677684523193 36.61643199514923 34.90932302799813 10.037468131620724 7 77.13638067314716 4.354439058960179 16.315075134541164 2.1941051333514983 8 78.9074502610233 2.91724391126871 16.004994045266212 2.170311782441786 9 75.17304545937158 4.827363888601067 16.95723976662049 3.0423508854068726 10 40.09768065997127 26.828026520631777 22.782773102256403 10.291519717140552 11 33.477884336171904 21.01387817548492 32.439419698080286 13.06881779026289 12 30.862534554725347 20.933031950888477 34.00172181990992 14.202711674476259 13 20.01762754707182 30.517275124051622 34.52735020102823 14.937747127848327 14 16.357161222978238 32.37968047832311 35.80208537207812 15.46107292662054 15 15.066947581712892 22.53857145232823 46.91051013711878 15.4839708288401 16 17.54324697370323 19.955585744968538 45.23090423687944 17.270263044448793 17 17.859852046292136 19.553657204332435 36.310188543117775 26.27630220625765 18 20.119452855266072 22.052214892335087 39.419186395320125 18.409145857078713 19 24.204617700973866 22.672121228402098 34.655911048685546 18.467350021938493 20 25.479992478231 22.46488881725299 33.92010806786478 18.135010636651227 21 20.79794711991721 25.01781303287192 36.455634994646495 17.728604852564374 22 20.485947212020502 21.36195187347054 35.30293668793997 22.849164226568984 23 18.168398080669693 25.631067464383527 34.8650622784564 21.335472176490377 24 17.819940618959716 22.83893052725298 42.31442785305943 17.026701000727872 25 17.5840538497258 23.531751970946527 40.012101349441174 18.872092829886494 26 16.94457556371693 28.89894349846686 35.191773129119866 18.96470780869634 27 16.9835915423592 28.18821308097031 36.50296585398302 18.325229522687472 28 15.60524016573476 25.52821878625768 41.59435918493702 17.272181863070546 29 16.455916421377687 23.364175144646943 40.63891543254649 19.54099300142888 30 18.596294633320156 26.19468845421251 37.669223812283256 17.539793100184077 31 24.730374003333626 24.030516891360325 33.681918716284756 17.557190389021287 32 24.967923748706397 24.448051823453337 33.23764824472868 17.34637618311158 33 24.41824617419547 24.82976880794033 32.366888354178094 18.385096663686102 34 19.794021217017107 24.926733108959475 33.473535013962604 21.805710660060814 35 19.736072894640227 25.438162232276834 34.38906733902071 20.43669753406223 36 25.649232280669438 25.349256969469035 30.537614601442186 18.46389614841934 37 20.145420867280432 29.614662844379975 31.38534866853176 18.854567619807835 38 20.924461227711323 29.468448865402546 29.656748932817045 19.950340974069086 39 20.800761387229112 28.15482563695184 29.99177466417476 21.052638311644287 40 23.363919302164042 25.570816559660546 29.969260525679548 21.09600361249586 41 19.61928080119632 24.29902357716401 30.811238136903874 25.270457484735797 42 21.335472176490377 25.43125448523853 28.43881079297098 24.794462545300107 43 20.99481791050886 25.54817449992389 29.567843670009246 23.88916391955801 44 19.525258688730524 28.121182350450475 31.02588998005708 21.327668980761924 45 18.38599211237625 31.695685600289615 28.176956011722705 21.741366275611433 46 20.911413261083418 29.399243473778064 29.439282822351938 20.250060442786584 47 20.90348214411351 26.23869336127133 30.337673701055735 22.52015079355942 48 21.046881855779034 25.457734182218694 32.39183299626086 21.103550965741412 49 20.275516769835146 25.043397281161933 33.05113907469449 21.629946874308427 50 19.553273440608088 29.168345632960698 30.818145883942172 20.460235042489042 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 252.0 1 589.5 2 927.0 3 10978.5 4 21030.0 5 15169.5 6 9309.0 7 9448.5 8 9588.0 9 10017.0 10 10446.0 11 10378.5 12 10311.0 13 9904.5 14 9498.0 15 8909.5 16 8321.0 17 7914.5 18 7508.0 19 6878.5 20 6249.0 21 5845.0 22 5441.0 23 5441.0 24 5441.0 25 5603.5 26 5766.0 27 6829.5 28 7893.0 29 8752.0 30 9611.0 31 11574.5 32 13538.0 33 16374.5 34 19211.0 35 21216.5 36 23222.0 37 25447.0 38 27672.0 39 32361.5 40 37051.0 41 44979.0 42 52907.0 43 60490.0 44 68073.0 45 69052.5 46 70032.0 47 67549.0 48 65066.0 49 63045.5 50 61025.0 51 55529.5 52 50034.0 53 44855.0 54 39676.0 55 35904.0 56 32132.0 57 29182.5 58 26233.0 59 23271.0 60 20309.0 61 17863.0 62 15417.0 63 13184.5 64 10952.0 65 9457.5 66 7963.0 67 6387.5 68 4812.0 69 4062.5 70 3313.0 71 2805.0 72 2297.0 73 1844.5 74 1392.0 75 1145.0 76 898.0 77 667.5 78 437.0 79 325.5 80 214.0 81 163.0 82 112.0 83 93.5 84 75.0 85 59.0 86 43.0 87 29.5 88 16.0 89 11.0 90 6.0 91 4.0 92 2.0 93 4.0 94 6.0 95 4.5 96 3.0 97 2.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 781731.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.587205924151835 #Duplication Level Percentage of deduplicated Percentage of total 1 74.86491738736687 23.647735620093723 2 7.535225901708769 4.760334644845551 3 3.5870580928314757 3.3991542792048954 4 2.2517123118328075 2.8450120190324353 5 1.5916260179023662 2.513750939085991 6 1.199251241734043 2.2728597556468806 7 0.8917504549306904 1.9717533676996257 8 0.7652086619077612 1.9336642862900104 9 0.6488815833346423 1.8446720573862934 >10 6.130323103899795 41.10487397848167 >50 0.49035805544413047 9.859206551714363 >100 0.04246231270178861 1.91233552977602 >500 8.16582936572858E-4 0.19293592882013258 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 4.08291468286429E-4 1.7417110419223867 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13505 1.7275763657831147 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.025840090772912935 0.0 2 0.0 0.0 0.0 0.09581300984609796 0.0 3 0.0 0.0 0.0 0.13393353979821704 0.0 4 0.0 0.0 0.0 0.20237140397400127 0.0 5 0.0 0.0 0.0 0.3713553639295359 0.0 6 0.0 0.0 0.0 0.5326640493980666 0.0 7 0.0 0.0 0.0 0.6389666010430698 0.0 8 0.0 0.0 0.0 0.9187303560943598 0.0 9 0.0 0.0 0.0 1.0373133469185691 0.0 10 1.2792124145006401E-4 0.0 0.0 1.2513255838645263 0.0 11 1.2792124145006401E-4 0.0 0.0 1.4412886274178713 0.0 12 1.2792124145006401E-4 0.0 0.0 1.6028531553693022 0.0 13 1.2792124145006401E-4 0.0 0.0 1.6693722009233356 0.0 14 1.2792124145006401E-4 0.0 0.0 1.6959798191449489 0.0 15 1.2792124145006401E-4 0.0 0.0 1.7319256879924168 0.0 16 1.2792124145006401E-4 0.0 0.0 1.8253081942509635 0.0 17 1.2792124145006401E-4 0.0 0.0 1.9395418628658707 0.0 18 1.2792124145006401E-4 0.0 0.0 2.108014137855605 0.0 19 1.2792124145006401E-4 0.0 0.0 2.1810571667235914 0.0 20 3.837637243501921E-4 0.0 0.0 2.263310524975983 0.0 21 3.837637243501921E-4 0.0 0.0 2.3742182413131885 0.0 22 5.116849658002561E-4 0.0 0.0 2.4848701151674937 0.0 23 5.116849658002561E-4 0.0 0.0 2.6088257981326057 0.0 24 5.116849658002561E-4 0.0 0.0 2.7066855478419045 0.0 25 5.116849658002561E-4 0.0 0.0 2.791625252164747 0.0 26 5.116849658002561E-4 0.0 0.0 2.8742623741414888 0.0 27 5.116849658002561E-4 0.0 0.0 2.9581787085327305 0.0 28 5.116849658002561E-4 0.0 0.0 3.0523287422399776 0.0 29 5.116849658002561E-4 0.0 0.0 3.154665735400029 0.0 30 6.396062072503201E-4 0.0 0.0 3.286680456576495 0.0 31 6.396062072503201E-4 0.0 0.0 3.3993790702940014 0.0 32 7.675274487003842E-4 0.0 0.0 3.5010764572468025 0.0 33 7.675274487003842E-4 0.0 0.0 3.6159497320689598 0.0 34 7.675274487003842E-4 0.0 0.0 3.726601605923265 0.0 35 8.954486901504482E-4 0.0 0.0 3.8797233319389917 0.0 36 0.0010233699316005121 0.0 0.0 3.9990738502119014 0.0 37 0.0010233699316005121 0.0 0.0 4.119831502140762 0.0 38 0.0010233699316005121 0.0 0.0 4.260289025252932 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTCGTAG 20 7.8549347E-4 44.0 1 CGACGTC 30 2.5266745E-6 44.0 18 CGCATCG 30 2.5266745E-6 44.0 21 CGTTCGA 35 1.4452962E-7 44.0 14 ATCGTAG 40 8.307325E-9 44.0 1 AGACGTC 20 7.8549347E-4 44.0 26 CATAGCG 20 7.8549347E-4 44.0 1 ACTACGT 20 7.8549347E-4 44.0 26 CGTAATC 20 7.8549347E-4 44.0 42 TCGACAG 35 1.4452962E-7 44.0 1 AATACGG 40 8.307325E-9 44.0 2 GTACGTA 25 4.4415294E-5 44.0 11 TACCGGG 60 0.0 44.0 3 CGTTTTT 9890 0.0 43.48837 1 CGGTCTA 115 0.0 42.086952 31 TACGGGA 225 0.0 42.04444 4 ACGGTCT 110 0.0 42.000004 30 GTTAGCG 60 3.6379788E-12 40.333332 1 GCACCGA 115 0.0 40.17391 9 ACACGCG 50 1.3460522E-9 39.6 36 >>END_MODULE