##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546072_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1899908 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.014389117788863 31.0 28.0 33.0 23.0 33.0 2 28.85748941527695 31.0 28.0 33.0 16.0 33.0 3 28.259951534495354 31.0 27.0 33.0 16.0 34.0 4 32.0537141798445 35.0 32.0 35.0 25.0 37.0 5 33.697160599355335 35.0 33.0 35.0 28.0 37.0 6 33.603203944612055 35.0 33.0 37.0 28.0 37.0 7 34.362467024719095 35.0 35.0 37.0 31.0 37.0 8 34.842752385905 35.0 35.0 37.0 32.0 37.0 9 36.753910189335485 39.0 37.0 39.0 32.0 39.0 10 36.28996351402279 38.0 35.0 39.0 31.0 39.0 11 36.41469113241273 39.0 35.0 39.0 32.0 39.0 12 35.316756916650704 37.0 34.0 39.0 29.0 39.0 13 35.78454325156797 37.0 35.0 39.0 30.0 39.0 14 36.57063078843818 38.0 35.0 40.0 31.0 41.0 15 37.04966345738846 39.0 35.0 40.0 32.0 41.0 16 36.63460704413056 38.0 35.0 40.0 31.0 41.0 17 36.279969872225394 38.0 34.0 40.0 31.0 41.0 18 35.887962469761696 38.0 34.0 39.0 29.0 41.0 19 35.31557370146344 37.0 34.0 39.0 29.0 41.0 20 35.56012659560358 36.0 34.0 39.0 30.0 41.0 21 35.686274282754745 36.0 34.0 39.0 30.0 40.0 22 36.077702183474145 37.0 35.0 40.0 31.0 41.0 23 36.413404754335474 37.0 35.0 40.0 32.0 41.0 24 35.96301452491384 37.0 35.0 40.0 31.0 41.0 25 35.613839722765526 36.0 34.0 40.0 30.0 41.0 26 35.749744724481396 37.0 34.0 40.0 30.0 41.0 27 36.103569225457235 37.0 35.0 40.0 31.0 41.0 28 36.01006575055213 37.0 35.0 40.0 31.0 41.0 29 36.10876263482232 37.0 35.0 40.0 31.0 41.0 30 35.73956159982483 37.0 35.0 40.0 30.0 41.0 31 35.00160849893784 36.0 34.0 40.0 28.0 41.0 32 34.920901433122026 37.0 34.0 40.0 26.0 41.0 33 34.53206944757325 37.0 34.0 40.0 23.0 41.0 34 34.039968251094265 37.0 34.0 40.0 20.0 41.0 35 33.72814841560749 37.0 33.0 40.0 17.0 41.0 36 33.2774697511669 37.0 33.0 40.0 15.0 41.0 37 33.18914968514265 37.0 33.0 40.0 15.0 41.0 38 33.03764866509326 37.0 33.0 40.0 12.0 41.0 39 32.7794182665687 36.0 32.0 40.0 10.0 41.0 40 32.59885215494645 36.0 32.0 40.0 10.0 41.0 41 32.28835501508494 36.0 31.0 40.0 10.0 40.0 42 32.46072651938936 36.0 32.0 40.0 10.0 40.0 43 32.264925985889846 35.0 31.0 40.0 10.0 40.0 44 32.119457889539916 35.0 31.0 39.0 10.0 40.0 45 32.06626952462961 35.0 31.0 39.0 10.0 40.0 46 31.855518267200306 35.0 31.0 39.0 10.0 40.0 47 31.80910075645768 35.0 31.0 39.0 10.0 40.0 48 31.80432052499384 35.0 31.0 39.0 10.0 40.0 49 31.828819606001975 35.0 31.0 39.0 10.0 40.0 50 32.04358579468058 35.0 31.0 39.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 7.0 12 12.0 13 37.0 14 82.0 15 209.0 16 500.0 17 1168.0 18 2232.0 19 3836.0 20 6215.0 21 8919.0 22 13173.0 23 18637.0 24 27743.0 25 42658.0 26 59772.0 27 64709.0 28 59208.0 29 54007.0 30 56733.0 31 66427.0 32 86219.0 33 127942.0 34 195243.0 35 167291.0 36 190559.0 37 275111.0 38 309453.0 39 61803.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.259162022582146 22.121123759676784 25.536447027961355 25.08326718977972 2 40.99351126475598 19.291723599247966 28.06625373439135 11.64851140160471 3 27.438539129263102 18.35857315196315 41.509746787739196 12.693140931034556 4 23.3144973335551 24.358758424092112 38.69808432829379 13.628659914058996 5 19.824328335898368 28.528802447276398 39.00125690296583 12.645612313859408 6 18.37131061082958 35.76141581592372 36.37855096141497 9.488722611831731 7 74.7804630540005 4.176781191510326 18.941338212166063 2.101417542323102 8 76.13368647323976 2.9730386945052074 18.685167913393702 2.208106918861334 9 72.22218128456747 5.074929943976235 19.5606839910143 3.1422047804420004 10 37.187274331178145 28.101992306995914 24.737039898774047 9.973693463051896 11 30.875442389842036 21.293820542889446 35.017327154788546 12.813409912479973 12 28.605753541750445 20.179608696842163 37.183116235101906 14.031521526305484 13 19.987388863039683 28.568962286594928 37.13111371708525 14.312535133280138 14 16.31400046739105 30.246727736290392 38.49007425622714 14.949197540091417 15 15.282371567465372 22.184547883371195 47.30423788941359 15.22884265974984 16 17.824231489103685 19.44520471517568 45.55178461272862 17.178779182992017 17 18.069822328239052 19.38467546849637 38.17169041869396 24.37381178457062 18 20.323352499173645 21.446933219924333 40.656179141305785 17.573535139596235 19 23.510191019775696 22.777260793680536 36.03379742598062 17.678750760563144 20 24.229225836198385 22.119755272360557 36.090221210711256 17.560797680729802 21 20.589418013924885 24.300124006004502 37.795040601965994 17.315417378104627 22 20.695896853952927 21.181604582958755 36.80015032306827 21.32234824002004 23 18.065453695652632 25.102215475696717 36.78883398564562 20.04349684300503 24 17.64369643161669 22.348818995446095 43.28614859245816 16.721335980479054 25 18.10182387778777 23.06606425153218 40.40206157350777 18.430050297172286 26 16.933293612111743 27.21458091654964 36.64266901344696 19.209456457891648 27 17.190569227562598 26.476334643572212 38.0768963549814 18.25619977388379 28 15.90534910111437 24.627245108710525 42.16651543127352 17.30089035890159 29 16.616330896022333 22.6526231796487 41.28063043052611 19.450415493802858 30 18.39978567383263 25.19479890605229 38.794510049960316 17.610905370154764 31 23.574509923638406 23.425239537914464 35.2831821330296 17.717068405417525 32 23.719832749796304 23.79678384427035 35.07569840223842 17.407685003694915 33 23.007219296934377 24.092271836320496 33.80590007516153 19.094608791583592 34 18.796752263793827 25.496339822770363 34.59204340420694 21.114864509228866 35 19.835381502683287 25.150954677805455 34.76610446400563 20.247559355505633 36 24.436604298734466 25.6267671908324 31.04645067024298 18.890177840190155 37 20.01665343795594 29.014510176282222 31.702745606629374 19.266090779132465 38 20.578996456670534 29.005246569833908 30.42636801360908 19.98938895988648 39 20.48978161047798 27.941774022742155 30.569901279430372 20.998543087349493 40 22.745259244131823 25.530341469165872 30.61227175210589 21.11212753459641 41 19.032447886950315 24.65682548839207 31.827067415895925 24.483659208761686 42 20.972857633106447 25.320857641527905 29.82712847148388 23.879156253881767 43 20.56857489941618 25.812513026946565 30.41131465313057 23.207597420506676 44 20.141185783732684 27.174631613741298 31.52536859679521 21.158814005730804 45 19.086397867686227 30.456422100438544 28.882030077245847 21.57514995462938 46 20.826166319632318 28.49211646037598 30.14661762569556 20.535099594296145 47 20.527151841036513 26.041050408756632 31.34788631870596 22.083911431500894 48 20.694107293616323 25.47739153685336 32.424938470704895 21.403562698825418 49 20.45867484109757 25.19048290759342 32.90880400524657 21.44203824606244 50 19.470100657505522 27.912930520846274 31.673902104733493 20.943066716914714 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 845.0 1 1734.5 2 2624.0 3 33816.0 4 65008.0 5 45873.5 6 26739.0 7 26680.5 8 26622.0 9 27381.0 10 28140.0 11 28117.5 12 28095.0 13 27176.0 14 26257.0 15 24831.0 16 23405.0 17 22216.0 18 21027.0 19 19127.0 20 17227.0 21 16700.0 22 16173.0 23 15411.0 24 14649.0 25 15908.5 26 17168.0 27 18748.0 28 20328.0 29 23528.5 30 26729.0 31 31334.5 32 35940.0 33 41796.5 34 47653.0 35 53655.5 36 59658.0 37 64039.5 38 68421.0 39 77354.5 40 86288.0 41 104861.5 42 123435.0 43 133877.0 44 144319.0 45 146152.5 46 147986.0 47 146697.0 48 145408.0 49 140657.5 50 135907.0 51 124392.5 52 112878.0 53 103828.5 54 94779.0 55 86773.5 56 78768.0 57 71935.0 58 65102.0 59 59378.5 60 53655.0 61 47944.5 62 42234.0 63 36291.5 64 30349.0 65 26228.0 66 22107.0 67 18383.0 68 14659.0 69 12667.5 70 10676.0 71 9281.0 72 7886.0 73 6459.5 74 5033.0 75 3950.0 76 2867.0 77 2137.0 78 1407.0 79 1014.0 80 621.0 81 503.0 82 385.0 83 283.5 84 182.0 85 143.5 86 105.0 87 86.5 88 68.0 89 61.5 90 55.0 91 35.5 92 16.0 93 16.0 94 16.0 95 9.5 96 3.0 97 3.5 98 4.0 99 3.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1899908.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.514474333351995 #Duplication Level Percentage of deduplicated Percentage of total 1 76.45401199091575 21.03591950605837 2 7.127300087149764 3.922078306279592 3 3.1348968679342866 2.587651182314504 4 1.9047497223840304 2.0963274939197896 5 1.3431479876211587 1.8478005415647876 6 1.0315106070499664 1.702888327335398 7 0.8145834013089542 1.5688983861382855 8 0.721442525911274 1.5880089489739502 9 0.6088818503741434 1.5077757639746916 >10 5.7189586092141225 34.07373417517415 >50 0.9402970787728622 17.743480894361515 >100 0.1970939075175518 7.508314202487178 >500 0.0027346933653968723 0.4980054747969578 >1k 1.9533524038549088E-4 0.06852546733931805 >5k 0.0 0.0 >10k+ 1.9533524038549088E-4 2.2505913292815247 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 41875 2.204054091040198 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.023948528033989013 0.0 2 0.0 0.0 0.0 0.09005699223330814 0.0 3 0.0 0.0 0.0 0.13663819511260544 0.0 4 0.0 0.0 0.0 0.198009587832674 0.0 5 0.0 0.0 0.0 0.36385972373399134 0.0 6 0.0 0.0 0.0 0.5580270202557176 0.0 7 0.0 0.0 0.0 0.6946652153683232 0.0 8 0.0 0.0 0.0 1.0033117393052717 0.0 9 0.0 0.0 0.0 1.1604772441612963 0.0 10 1.052682550944572E-4 0.0 0.0 1.4141737389389382 0.0 11 1.579023826416858E-4 0.0 0.0 1.5984458194817854 0.0 12 1.579023826416858E-4 0.0 0.0 1.763664345852536 0.0 13 3.158047652833716E-4 0.0 0.0 1.82835168860808 0.0 14 3.158047652833716E-4 0.0 0.0 1.8590373849681143 0.0 15 3.158047652833716E-4 0.0 0.0 1.895828640123627 0.0 16 3.684388928306002E-4 0.0 0.0 1.9659372980165355 0.0 17 4.210730203778288E-4 0.0 0.0 2.0660474086113645 0.0 18 4.737071479250574E-4 0.0 0.0 2.2018960918107613 0.0 19 4.737071479250574E-4 0.0 0.0 2.269688848091592 0.0 20 4.737071479250574E-4 0.0 0.0 2.346903113203376 0.0 21 4.737071479250574E-4 0.0 0.0 2.439907616579329 0.0 22 4.737071479250574E-4 0.0 0.0 2.5447021645258614 0.0 23 4.737071479250574E-4 0.0 0.0 2.6555496371403247 0.0 24 4.737071479250574E-4 0.0 0.0 2.7387115586649458 0.0 25 4.737071479250574E-4 0.0 0.0 2.810346606256724 0.0 26 4.737071479250574E-4 0.0 0.0 2.8811921419352937 0.0 27 4.737071479250574E-4 0.0 0.0 2.961353918189723 0.0 28 6.316095305667432E-4 0.0 0.0 3.0411998896788686 0.0 29 6.316095305667432E-4 0.0 0.0 3.137520343090297 0.0 30 6.316095305667432E-4 0.0 0.0 3.262736932525154 0.0 31 6.316095305667432E-4 0.0 0.0 3.364110262181116 0.0 32 6.316095305667432E-4 0.0 0.0 3.458062179852919 0.0 33 6.316095305667432E-4 0.0 0.0 3.5622777523964317 0.0 34 7.368777856612004E-4 0.0 0.0 3.6690197630622112 0.0 35 7.89511913208429E-4 0.0 0.0 3.7954995715582016 0.0 36 8.421460407556576E-4 0.0 0.0 3.902662655244359 0.0 37 8.947801683028862E-4 0.0 0.0 4.013036420710898 0.0 38 8.947801683028862E-4 0.0 0.0 4.146148129277838 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGATCG 40 8.3182385E-9 44.000004 9 CGTTTTT 28945 0.0 43.369152 1 TCGCCGT 60 3.6379788E-12 40.333332 25 GTTTTTT 32800 0.0 39.123783 2 ACGTTAG 40 4.126432E-7 38.500004 1 TACGTAG 70 0.0 37.714283 1 CGGGATA 410 0.0 37.560974 6 CGACCCG 510 0.0 37.52941 32 CGTTGAT 295 0.0 37.288136 25 TAGACGG 195 0.0 37.230766 2 ACCCGCT 510 0.0 37.09804 34 GCGTAAG 95 0.0 37.05263 1 TACGGGA 505 0.0 37.029705 4 ATAGGGA 1900 0.0 36.93684 4 TAGGGCG 425 0.0 36.75294 5 AAGGGAT 2300 0.0 36.730434 5 GGGCGAT 2480 0.0 36.637096 7 TTACGGG 415 0.0 36.578312 3 TCAGACG 545 0.0 36.330276 22 AGGGATC 1530 0.0 36.235294 6 >>END_MODULE