##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546070_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1674371 Sequences flagged as poor quality 0 Sequence length 50 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.952814519601688 28.0 25.0 30.0 16.0 33.0 2 26.20769829386677 30.0 25.0 31.0 10.0 33.0 3 26.4239472613895 30.0 25.0 31.0 16.0 33.0 4 27.743043208464552 32.0 19.0 35.0 10.0 35.0 5 31.169294618695616 33.0 30.0 35.0 19.0 37.0 6 29.85662197923877 33.0 28.0 35.0 17.0 36.0 7 29.954704781676224 32.0 28.0 35.0 17.0 35.0 8 32.503328712692706 33.0 32.0 35.0 28.0 35.0 9 27.21551436330419 31.0 23.0 34.0 10.0 35.0 10 31.76881527451204 34.0 30.0 37.0 17.0 39.0 11 33.84490175713746 35.0 32.0 37.0 27.0 39.0 12 33.44911133792929 35.0 32.0 39.0 25.0 39.0 13 33.82577218549533 35.0 32.0 39.0 25.0 39.0 14 33.647972880562314 36.0 31.0 39.0 24.0 40.0 15 32.29780616123906 35.0 29.0 38.0 19.0 40.0 16 30.7647253804563 34.0 27.0 38.0 17.0 40.0 17 31.148419316865855 33.0 27.0 38.0 17.0 40.0 18 31.998405371330488 34.0 29.0 38.0 18.0 39.0 19 31.665614132112896 35.0 29.0 37.0 18.0 39.0 20 32.27877453682607 34.0 30.0 37.0 23.0 39.0 21 33.056929437979996 35.0 31.0 37.0 25.0 39.0 22 33.413235776300475 35.0 31.0 38.0 26.0 39.0 23 34.59983898431113 35.0 33.0 38.0 29.0 40.0 24 34.19861607732098 35.0 33.0 38.0 27.0 40.0 25 32.95668403239186 35.0 31.0 38.0 23.0 40.0 26 26.551899788039808 33.0 20.0 36.0 0.0 39.0 27 29.92866455522701 34.0 24.0 37.0 15.0 39.0 28 31.434869571916856 34.0 29.0 37.0 20.0 39.0 29 32.65626435240458 35.0 30.0 37.0 23.0 39.0 30 32.42484013399659 35.0 31.0 38.0 22.0 39.0 31 31.231551430358028 34.0 29.0 37.0 18.0 39.0 32 31.537397028496073 34.0 30.0 37.0 18.0 39.0 33 31.216294357702086 34.0 30.0 37.0 17.0 39.0 34 31.04980676325617 34.0 30.0 38.0 15.0 39.0 35 30.200508728352318 34.0 27.0 37.0 10.0 39.0 36 29.92819631969259 34.0 26.0 37.0 10.0 39.0 37 30.01787417483939 34.0 27.0 38.0 10.0 39.0 38 29.714942506768214 34.0 26.0 37.0 10.0 39.0 39 29.53533416429214 34.0 26.0 37.0 9.0 39.0 40 29.43059214475167 33.0 26.0 37.0 9.0 39.0 41 28.808295174725316 33.0 24.0 36.0 8.0 38.0 42 29.012776738249766 33.0 24.0 37.0 8.0 38.0 43 28.57717913174559 33.0 24.0 36.0 8.0 38.0 44 28.395557495919363 33.0 23.0 36.0 8.0 38.0 45 27.948839295472748 32.0 23.0 35.0 8.0 38.0 46 27.49170046542851 31.0 23.0 35.0 8.0 38.0 47 27.5349740290533 31.0 23.0 35.0 8.0 38.0 48 27.565507286019646 31.0 23.0 35.0 8.0 38.0 49 27.38864863282988 31.0 23.0 35.0 8.0 38.0 50 29.26462653736836 34.0 24.0 37.0 8.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 13.0 11 37.0 12 63.0 13 197.0 14 500.0 15 1124.0 16 2442.0 17 4505.0 18 7642.0 19 12395.0 20 18099.0 21 25599.0 22 34415.0 23 45755.0 24 58703.0 25 72130.0 26 82854.0 27 88374.0 28 95028.0 29 109770.0 30 130633.0 31 154254.0 32 174448.0 33 181644.0 34 166189.0 35 129286.0 36 64761.0 37 13165.0 38 345.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.19722331550176 23.065915499014256 25.303233273868216 26.433627911615766 2 40.88795135606147 16.68937171033182 29.731403613655516 12.691273319951193 3 28.63678360411163 14.247917576212203 43.23277218728705 13.88252663238912 4 24.408449501335127 24.272935926386687 37.640702090516385 13.677912481761808 5 19.104666767401014 28.776179233873496 39.76281242329209 12.356341575433403 6 18.427815579701274 34.19319852051905 37.61537914834884 9.763606751430835 7 76.58870107043182 2.9528700628474813 19.06453229302228 1.3938965736984217 8 78.45734308585133 1.776906073982409 18.442447940151855 1.3233029000143934 9 66.18234548973913 3.4024120102414583 18.021215130935737 12.394027369083673 10 37.538454739122926 28.775880614272463 24.89543834669855 8.790226299906054 11 31.126076598316622 21.0636710740929 35.79057449036086 12.019677837229622 12 28.69059485621765 20.409634423912024 38.008004199786065 12.891766520084257 13 19.325943891765924 29.039024206702095 37.670683498460015 13.964348403071961 14 15.77254981124255 30.28946392406462 39.27444992776392 14.663536336928912 15 13.871119363629687 20.692546633929997 47.20471150061725 18.23162250182307 16 16.09326726275121 17.76488006540964 45.29014179055896 20.851710881280194 17 17.354098942229648 18.72177671495744 39.00437836059034 24.919745982222576 18 19.812454945767694 21.20324587561538 41.59472422778464 17.38957495083228 19 23.737391533895416 22.22297208922037 36.94784489220131 17.091791484682904 20 24.396026925932183 21.94680868218573 36.820035702959494 16.837128688922586 21 20.227715362963167 23.97640666256164 38.52754258166201 17.26833539281318 22 20.192956041403008 20.8610278128324 37.43686435085175 21.509151794912835 23 17.434785958428566 25.005151188117807 37.641538225399266 19.918524628054357 24 16.81891289325962 21.85131013377561 45.076748223661305 16.253028749303468 25 17.498212761687824 22.019612140917395 41.94960376165139 18.53257133574339 26 13.483690293250419 39.25653275170198 30.64105864232001 16.618718312727584 27 16.3476911628307 27.162200014214292 38.77038004122145 17.71972878173356 28 15.261671397796544 24.543783904522954 43.423530388426464 16.771014309254042 29 15.943718566554246 22.460135776360197 42.32293798686193 19.273207670223623 30 17.92243176691426 24.95205662305427 39.60693299155324 17.518578618478223 31 23.842147289937536 23.158427851414054 35.937136990547494 17.062287868100917 32 23.726163436896602 23.21594198657287 35.70051081868952 17.357383757841006 33 22.91188750880181 23.85654075470729 34.49832802885382 18.733243707637076 34 18.376393284403516 24.839178413864072 35.07311103692073 21.71131726481168 35 19.41726176576159 24.869577889249157 34.978388899473295 20.73477144551596 36 24.222349765971817 25.01500563495187 31.424935095029717 19.337709504046593 37 19.317642266857227 29.207624833444918 31.645376084511735 19.82935681518612 38 19.900368556311594 29.356815186120638 30.504290865047235 20.238525392520536 39 19.918345456293736 27.914661684895403 30.598415763292603 21.568577095518258 40 22.378970968799628 25.03997023359817 30.840655983649977 21.740402813952226 41 18.376572456164137 23.9862013854755 32.11187962524434 25.525346533116018 42 20.2845128110795 24.75228010996368 29.3055720625835 25.657635016373316 43 20.100742308604246 25.25712640746883 30.539468254048835 24.102663029878084 44 19.4256828385107 26.956391385182854 31.586966090549822 22.03095968575662 45 18.490525695918052 31.165733281333708 28.454685371402157 21.889055651346087 46 19.997121307046047 28.257297815119824 29.894270744058517 21.85131013377561 47 19.987386308052397 25.50408481752252 30.916803981913212 23.591724892511877 48 20.05875639269911 24.887674237071714 32.95798840280917 22.095580967420002 49 19.99156698246685 25.04379256449138 32.42345931696141 22.541181136080354 50 18.873714367962656 28.26530082042749 31.701815189106835 21.15916962250302 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 517.0 1 1024.0 2 1531.0 3 19918.0 4 38305.0 5 30977.0 6 23649.0 7 23374.0 8 23099.0 9 24249.0 10 25399.0 11 26177.5 12 26956.0 13 26874.5 14 26793.0 15 26208.0 16 25623.0 17 24492.5 18 23362.0 19 21860.0 20 20358.0 21 19549.0 22 18740.0 23 17856.0 24 16972.0 25 17409.5 26 17847.0 27 19373.0 28 20899.0 29 23104.5 30 25310.0 31 29666.5 32 34023.0 33 39082.5 34 44142.0 35 48879.5 36 53617.0 37 57049.5 38 60482.0 39 67945.0 40 75408.0 41 90242.0 42 105076.0 43 113887.0 44 122698.0 45 124724.5 46 126751.0 47 125277.0 48 123803.0 49 118981.5 50 114160.0 51 105434.5 52 96709.0 53 89808.5 54 82908.0 55 75834.0 56 68760.0 57 63401.0 58 58042.0 59 52820.5 60 47599.0 61 42466.5 62 37334.0 63 32235.5 64 27137.0 65 23382.5 66 19628.0 67 16522.0 68 13416.0 69 11679.0 70 9942.0 71 8518.5 72 7095.0 73 5868.5 74 4642.0 75 3685.5 76 2729.0 77 2053.0 78 1377.0 79 1018.5 80 660.0 81 521.0 82 382.0 83 303.0 84 224.0 85 180.0 86 136.0 87 100.0 88 64.0 89 52.5 90 41.0 91 28.0 92 15.0 93 11.5 94 8.0 95 5.0 96 2.0 97 1.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1674371.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.718313971681404 #Duplication Level Percentage of deduplicated Percentage of total 1 80.82728997902547 34.528055508041476 2 7.4042913904501875 6.325976887101372 3 2.9697312300006464 3.805857332840256 4 1.6781701828654345 2.867544030782385 5 1.121375983801212 2.395164567816165 6 0.7780477021842304 1.994213161611073 7 0.611454275436585 1.82842070021989 8 0.48255560657126384 1.649116952824513 9 0.40171701957681966 1.5444606393045601 >10 3.361879578547164 29.50724231297393 >50 0.31877950170301594 9.111364501878402 >100 0.04394462956116056 2.822827208880888 >500 6.103362214836067E-4 0.1754681560922256 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 1.5258405537090167E-4 1.444288039632814 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 22158 1.3233626239346 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.01815607174276191 0.0 2 0.0 0.0 0.0 0.07083256936485402 0.0 3 5.972392020645365E-5 0.0 0.0 0.10696554108975848 0.0 4 5.972392020645365E-5 0.0 0.0 0.14811532211200504 0.0 5 5.972392020645365E-5 0.0 0.0 0.2530502499147441 0.0 6 5.972392020645365E-5 0.0 0.0 0.36138944116925104 0.0 7 5.972392020645365E-5 0.0 0.0 0.4347304151827761 0.0 8 5.972392020645365E-5 0.0 0.0 0.6162911326103951 0.0 9 5.972392020645365E-5 0.0 0.0 0.7326333291725668 0.0 10 5.972392020645365E-5 0.0 0.0 0.8938879137299918 0.0 11 1.194478404129073E-4 0.0 0.0 1.0227124096153122 0.0 12 1.194478404129073E-4 0.0 0.0 1.1283640244605289 0.0 13 1.194478404129073E-4 0.0 0.0 1.1701707686050462 0.0 14 1.194478404129073E-4 0.0 0.0 1.1889838034700793 0.0 15 1.194478404129073E-4 0.0 0.0 1.2132317150738994 0.0 16 1.194478404129073E-4 0.0 0.0 1.2564718333033718 0.0 17 1.194478404129073E-4 0.0 0.0 1.327961365790497 0.0 18 1.194478404129073E-4 0.0 0.0 1.4132471238453126 0.0 19 1.194478404129073E-4 0.0 0.0 1.451589880617856 0.0 20 1.194478404129073E-4 0.0 0.0 1.499787084224464 0.0 21 1.194478404129073E-4 0.0 0.0 1.5563456366599755 0.0 22 1.194478404129073E-4 0.0 0.0 1.6152931459037454 0.0 23 1.194478404129073E-4 0.0 0.0 1.6796158079660959 0.0 24 1.194478404129073E-4 0.0 0.0 1.729783900939517 0.0 25 1.194478404129073E-4 0.0 0.0 1.7712920254830022 0.0 26 1.194478404129073E-4 0.0 0.0 1.813516837068965 0.0 27 1.194478404129073E-4 0.0 0.0 1.869060082860967 0.0 28 1.194478404129073E-4 0.0 0.0 1.9272311811420528 0.0 29 1.194478404129073E-4 0.0 0.0 1.9941816956934872 0.0 30 1.194478404129073E-4 0.0 0.0 2.080004969030161 0.0 31 1.194478404129073E-4 0.0 0.0 2.1582433045006155 0.0 32 1.194478404129073E-4 0.0 0.0 2.2271049844986566 0.0 33 1.194478404129073E-4 0.0 0.0 2.3019390565173428 0.0 34 1.194478404129073E-4 0.0 0.0 2.3838802750405974 0.0 35 1.194478404129073E-4 0.0 0.0 2.480871921455878 0.0 36 1.194478404129073E-4 0.0 0.0 2.5622756246972744 0.0 37 1.194478404129073E-4 0.0 0.0 2.64385849969929 0.0 38 1.194478404129073E-4 0.0 0.0 2.742343244119732 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 26030 0.0 43.425278 1 ATAGGCG 265 0.0 40.679245 4 GTACCGG 65 0.0 40.615383 2 CGTGTTT 410 0.0 39.707317 1 TCGACGG 100 0.0 39.600002 2 GTTTTTT 29575 0.0 38.993748 2 CGTTAGG 290 0.0 37.931038 2 ACGGCGG 215 0.0 37.860466 5 CGGAATT 385 0.0 37.714287 9 TCGATAG 140 0.0 37.714287 1 TACGTAG 35 7.292201E-6 37.714287 1 CATACGA 520 0.0 37.653843 18 ACATACG 525 0.0 37.29524 17 CGGTCTA 215 0.0 36.837208 31 ACGGGAG 460 0.0 36.826088 5 TAGGGAC 1145 0.0 36.69869 5 ATAGGGA 1660 0.0 36.578312 4 TAACGGG 405 0.0 36.39506 3 TAACGGC 115 0.0 36.347828 3 ACGGTCT 225 0.0 36.17778 30 >>END_MODULE