##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546069_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 637571 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.973314344598485 31.0 28.0 33.0 23.0 33.0 2 28.71422006333412 31.0 28.0 33.0 16.0 33.0 3 28.25198919022352 31.0 27.0 33.0 16.0 34.0 4 32.307178337785125 35.0 32.0 35.0 26.0 37.0 5 33.68920481013095 35.0 33.0 35.0 28.0 37.0 6 33.4863615189524 35.0 33.0 37.0 28.0 37.0 7 34.53123652110902 35.0 35.0 37.0 32.0 37.0 8 34.94439678090754 35.0 35.0 37.0 32.0 37.0 9 36.6824228203604 39.0 37.0 39.0 32.0 39.0 10 36.331326236607374 38.0 35.0 39.0 32.0 39.0 11 36.37546877132115 38.0 35.0 39.0 32.0 39.0 12 35.04084564699461 37.0 34.0 39.0 29.0 39.0 13 35.09412128217877 37.0 34.0 39.0 27.0 39.0 14 35.766004099935536 38.0 33.0 40.0 27.0 41.0 15 36.419797951914376 38.0 35.0 40.0 31.0 41.0 16 36.04827697621128 37.0 34.0 40.0 31.0 41.0 17 35.60593878956226 37.0 34.0 40.0 29.0 41.0 18 35.26501675891783 37.0 33.0 39.0 29.0 40.0 19 34.76015220265665 36.0 33.0 39.0 27.0 40.0 20 35.257731295808625 35.0 34.0 39.0 30.0 40.0 21 35.47728174587615 36.0 34.0 39.0 30.0 40.0 22 35.79580156562955 36.0 34.0 40.0 31.0 41.0 23 36.15571912775204 37.0 35.0 40.0 32.0 41.0 24 35.855634901838386 36.0 35.0 40.0 31.0 41.0 25 35.51752667546046 36.0 34.0 40.0 30.0 41.0 26 35.63991304497852 36.0 34.0 40.0 31.0 41.0 27 35.90675234601323 36.0 35.0 40.0 31.0 41.0 28 35.83229005083356 36.0 35.0 40.0 31.0 41.0 29 35.98332577861917 36.0 35.0 40.0 31.0 41.0 30 35.62217541262071 36.0 35.0 40.0 30.0 41.0 31 34.94528138826892 36.0 34.0 40.0 29.0 41.0 32 34.894948170478266 36.0 34.0 40.0 28.0 41.0 33 34.63830538089091 36.0 34.0 40.0 26.0 41.0 34 34.40657746352955 36.0 34.0 40.0 24.0 41.0 35 34.20161832956643 36.0 34.0 40.0 23.0 41.0 36 33.844354589528066 36.0 33.0 40.0 21.0 41.0 37 33.769658594885904 36.0 33.0 40.0 21.0 41.0 38 33.611260549805436 35.0 33.0 40.0 20.0 41.0 39 33.42462408108273 35.0 33.0 40.0 18.0 40.0 40 33.2262022582583 35.0 33.0 39.0 18.0 40.0 41 32.95677971551404 35.0 33.0 39.0 18.0 40.0 42 33.13879395392827 35.0 33.0 39.0 18.0 40.0 43 32.918021679154165 35.0 33.0 39.0 18.0 40.0 44 32.79235724335015 35.0 32.0 39.0 18.0 40.0 45 32.69241543294786 35.0 32.0 39.0 18.0 40.0 46 32.56343215108592 35.0 32.0 39.0 18.0 40.0 47 32.52956298200514 35.0 32.0 38.0 18.0 40.0 48 32.54709357859752 35.0 32.0 38.0 18.0 40.0 49 32.557354396608375 35.0 32.0 38.0 18.0 40.0 50 32.70521871289629 35.0 32.0 39.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 0.0 12 5.0 13 15.0 14 29.0 15 73.0 16 136.0 17 334.0 18 643.0 19 1123.0 20 1725.0 21 2555.0 22 3687.0 23 5137.0 24 7491.0 25 11455.0 26 15830.0 27 18041.0 28 17556.0 29 17420.0 30 19527.0 31 24983.0 32 33871.0 33 52776.0 34 85376.0 35 59778.0 36 61550.0 37 85026.0 38 91991.0 39 19436.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.088995578531645 22.945679775272087 26.746354523653054 21.218970122543215 2 36.24835508515915 20.994524531385526 30.246670566885886 12.51044981656945 3 29.108914928690293 18.838372510669398 38.236996350210404 13.815716210429896 4 25.504139931082186 25.388074426220765 34.65857135911138 14.44921428358567 5 20.851952174738187 29.525339138699845 35.29144205115979 14.331266635402176 6 19.163042233727694 37.00638830812568 32.92025515589636 10.91031430225026 7 78.99669213311145 4.652971982728198 14.060551687576755 2.289784196583596 8 80.97702059849021 2.8214896850703686 13.76929000848533 2.4321997079540947 9 77.45709889565241 4.119070660365669 15.080987058696207 3.3428433852857173 10 47.78338412506215 19.720940883446705 20.56021995981624 11.935455031674904 11 41.55850877784592 20.017221611397005 25.21899521778751 13.205274392969567 12 37.04685438955034 19.78273792252157 29.450994477477803 13.719413210450288 13 21.27261120722241 33.60849223066921 30.34454201963389 14.774354542474486 14 16.2554444916723 36.000382702475484 33.232377256807474 14.511795549044734 15 15.20191476713966 21.742990192464838 47.78024721952536 15.274847820870146 16 17.0914298172282 16.93693721954104 47.44240249321252 18.52923047001824 17 17.857775839867244 17.208122703196977 33.763141673633214 31.170959783302564 18 21.34444634401502 21.13850849552442 37.73524830960003 19.78179685086053 19 26.333067219180293 22.847024096139883 31.203113065054715 19.61679561962511 20 28.135846831176448 21.58928182116188 30.3374839821761 19.93738736548557 21 22.79761783393536 24.757399568048108 33.00244208096039 19.442540517056138 22 22.13369177707267 21.416124635530785 31.494061053592464 24.956122533804077 23 19.521120000752855 26.40051068822139 30.806294514650133 23.27207479637562 24 19.38309615713387 22.342295995269545 40.35283913477872 17.92176871281787 25 18.2458110547688 21.94218369405133 39.08521560735981 20.726789643820062 26 17.305994155944983 29.02249318115159 32.74756850609579 20.923944156807632 27 17.559142432764354 28.116711707401997 34.62092849266983 19.703217367163813 28 15.916501848421587 24.659057579469582 41.848829385276304 17.575611186832525 29 16.350649574714033 22.895646131960206 40.33495877321898 20.41874552010678 30 18.92197104322499 25.524529817071357 36.98192044493868 18.571578694764977 31 27.084356095242722 23.00982949349955 30.61698226550455 19.28883214575318 32 26.568491979716768 24.30788100462537 31.0464246334918 18.077202382166067 33 25.60405037242911 24.109942265253594 30.60459148863421 19.68141587368309 34 19.67294622873374 25.166922585876712 32.298520478503576 22.86161070688598 35 19.671220930688506 24.188992284780834 34.173135227292335 21.966651557238333 36 28.52717579689164 22.71903835023864 29.16835928861256 19.58542656425716 37 20.729456013526338 28.954579176279978 30.184873527811018 20.13109128238267 38 21.361228788636875 29.711671327585478 27.142075157119756 21.785024726657895 39 21.11184479846166 28.32139479367788 28.033897401230607 22.53286300662985 40 23.282112894093363 24.786729634817142 28.808556223542165 23.12260124754733 41 19.034115416165413 23.712182643187973 29.685948702183758 27.567753238462856 42 22.12114415492549 25.522177137918757 26.406313963464463 25.95036474369129 43 21.69860297911919 25.287693449043324 27.86779825305731 25.14590531878018 44 20.34879252663625 27.5900252677741 30.41104441701395 21.650137788575705 45 19.0450945855442 32.25413326515792 26.596096748440566 22.104675400857314 46 22.28065580147152 28.66065112748227 28.876783918967458 20.18190915207875 47 21.872544391134475 25.69094265579833 29.777389498581336 22.65912345448585 48 22.425580837271454 23.80315290375503 31.897153415070633 21.874112843902875 49 21.200148689322443 23.261723008104195 32.950212603772755 22.587915698800604 50 20.031808222143102 28.82079015513566 29.838088620718324 21.309313002002913 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 200.0 1 529.0 2 858.0 3 7774.5 4 14691.0 5 10408.0 6 6125.0 7 6262.5 8 6400.0 9 6601.0 10 6802.0 11 6835.0 12 6868.0 13 6502.5 14 6137.0 15 5761.5 16 5386.0 17 4978.0 18 4570.0 19 4218.0 20 3866.0 21 3742.0 22 3618.0 23 3399.5 24 3181.0 25 3353.0 26 3525.0 27 3821.5 28 4118.0 29 5002.5 30 5887.0 31 6910.5 32 7934.0 33 9006.0 34 10078.0 35 12633.5 36 15189.0 37 15935.0 38 16681.0 39 20885.0 40 25089.0 41 34178.5 42 43268.0 43 50399.0 44 57530.0 45 58058.0 46 58586.0 47 56098.5 48 53611.0 49 52101.0 50 50591.0 51 48258.5 52 45926.0 53 40839.5 54 35753.0 55 32644.0 56 29535.0 57 27475.0 58 25415.0 59 23316.0 60 21217.0 61 19574.0 62 17931.0 63 15718.0 64 13505.0 65 11694.5 66 9884.0 67 8111.0 68 6338.0 69 5337.0 70 4336.0 71 3623.5 72 2911.0 73 2415.5 74 1920.0 75 1502.5 76 1085.0 77 824.0 78 563.0 79 401.5 80 240.0 81 174.5 82 109.0 83 75.5 84 42.0 85 39.5 86 37.0 87 27.0 88 17.0 89 11.5 90 6.0 91 7.0 92 8.0 93 5.5 94 3.0 95 1.5 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 637571.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.16573550963291 #Duplication Level Percentage of deduplicated Percentage of total 1 75.79732398830646 21.348873797925936 2 7.5326465278934736 4.243250595844046 3 3.3784511270462017 2.8546968262981354 4 2.0800330682567836 2.3434264500724318 5 1.4030723764330275 1.9759282727742375 6 1.0101250001320023 1.7070548151231533 7 0.7491675511411724 1.4770598568489153 8 0.5981954042104132 1.3478890830454755 9 0.4734250006006271 1.2000927015508558 >10 5.902908304848988 38.54303952110026 >50 1.0021154545333 18.480197483343392 >100 0.07142025511150446 2.9507716402382385 >500 5.579707430586286E-4 0.08690757973219779 >1k 0.0 0.0 >5k 5.579707430586286E-4 1.4408113761026933 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9168 1.437957498066882 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.030271138430072887 0.0 2 0.0 0.0 0.0 0.1041452638215979 0.0 3 0.0 0.0 0.0 0.14241551137049835 0.0 4 0.0 0.0 0.0 0.21456433871678604 0.0 5 0.0 0.0 0.0 0.38976051294679337 0.0 6 0.0 0.0 0.0 0.55899656665689 0.0 7 0.0 0.0 0.0 0.6758462979025082 0.0 8 0.0 0.0 0.0 0.9918895307346163 0.0 9 0.0 0.0 0.0 1.132736589336717 0.0 10 0.0 0.0 0.0 1.3687887309805495 0.0 11 0.0 0.0 0.0 1.5675116967365204 0.0 12 0.0 0.0 0.0 1.7576081722663044 0.0 13 1.568452768397559E-4 0.0 0.0 1.8416772406524136 0.0 14 1.568452768397559E-4 0.0 0.0 1.8699093904835697 0.0 15 1.568452768397559E-4 0.0 0.0 1.90817963803247 0.0 16 1.568452768397559E-4 0.0 0.0 1.991150789480701 0.0 17 1.568452768397559E-4 0.0 0.0 2.0945118269181 0.0 18 1.568452768397559E-4 0.0 0.0 2.2624931184134787 0.0 19 1.568452768397559E-4 0.0 0.0 2.3358967079744843 0.0 20 3.136905536795118E-4 0.0 0.0 2.4143193463943624 0.0 21 3.136905536795118E-4 0.0 0.0 2.520503598814877 0.0 22 3.136905536795118E-4 0.0 0.0 2.618845587393404 0.0 23 3.136905536795118E-4 0.0 0.0 2.730048888672791 0.0 24 3.136905536795118E-4 0.0 0.0 2.8086283723695087 0.0 25 3.136905536795118E-4 0.0 0.0 2.8782676752863603 0.0 26 3.136905536795118E-4 0.0 0.0 2.9428879293443395 0.0 27 3.136905536795118E-4 0.0 0.0 3.0086061003401974 0.0 28 3.136905536795118E-4 0.0 0.0 3.0816959993475237 0.0 29 3.136905536795118E-4 0.0 0.0 3.1588638755526834 0.0 30 4.705358305192677E-4 0.0 0.0 3.26395021103532 0.0 31 4.705358305192677E-4 0.0 0.0 3.3593121393538916 0.0 32 4.705358305192677E-4 0.0 0.0 3.4427538266326416 0.0 33 4.705358305192677E-4 0.0 0.0 3.5393705171659313 0.0 34 4.705358305192677E-4 0.0 0.0 3.631909230501387 0.0 35 4.705358305192677E-4 0.0 0.0 3.7576991425268713 0.0 36 4.705358305192677E-4 0.0 0.0 3.8502378558623276 0.0 37 4.705358305192677E-4 0.0 0.0 3.947011391672457 0.0 38 4.705358305192677E-4 0.0 0.0 4.058685228782363 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGCGG 30 2.525936E-6 44.000004 2 CTCACGG 25 4.4406017E-5 44.0 2 ACACGTG 20 7.853842E-4 44.0 42 GTACCAC 20 7.853842E-4 44.0 9 TAGACTA 20 7.853842E-4 44.0 1 CGCATTG 20 7.853842E-4 44.0 12 GGCGTAA 20 7.853842E-4 44.0 30 TTCGTAC 35 1.4447323E-7 44.0 33 ACGATTG 20 7.853842E-4 44.0 1 GTGTCGA 20 7.853842E-4 44.0 10 ATAACGG 45 4.783942E-10 44.0 2 ACGTAAG 20 7.853842E-4 44.0 1 TCGAGAG 25 4.4406017E-5 44.0 1 CACGTGA 20 7.853842E-4 44.0 43 CGTTTTT 6285 0.0 43.159904 1 ACGGGAT 170 0.0 42.70588 5 CGTTAGG 115 0.0 42.08696 2 CGACGGT 90 0.0 41.555557 28 GTTGTAG 75 0.0 41.066666 1 GCGTTAG 50 1.3460522E-9 39.600002 1 >>END_MODULE