##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546068_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 638614 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.943319438659348 31.0 28.0 33.0 23.0 33.0 2 28.6580328649231 31.0 28.0 33.0 16.0 33.0 3 28.229958942334495 31.0 27.0 33.0 16.0 34.0 4 32.287671425931784 35.0 32.0 35.0 26.0 37.0 5 33.729373299050756 35.0 33.0 35.0 28.0 37.0 6 33.56861421766513 35.0 33.0 37.0 28.0 37.0 7 34.58929494185846 35.0 35.0 37.0 32.0 37.0 8 34.9761827958673 35.0 35.0 37.0 32.0 37.0 9 36.78736137948745 39.0 37.0 39.0 32.0 39.0 10 36.33054709104404 38.0 35.0 39.0 32.0 39.0 11 36.42214232697686 38.0 35.0 39.0 32.0 39.0 12 34.979533802891886 37.0 33.0 39.0 29.0 39.0 13 35.102615977726764 37.0 34.0 39.0 27.0 39.0 14 35.764295803098584 38.0 34.0 40.0 27.0 41.0 15 36.44422139195195 38.0 35.0 40.0 31.0 41.0 16 36.07453328614781 37.0 34.0 40.0 31.0 41.0 17 35.654234013034475 37.0 34.0 40.0 30.0 41.0 18 35.34249797217098 37.0 33.0 39.0 29.0 40.0 19 34.84098532133652 36.0 33.0 39.0 27.0 40.0 20 35.23806242894769 35.0 34.0 39.0 29.0 40.0 21 35.387803900321636 36.0 34.0 39.0 30.0 40.0 22 35.78082534989837 36.0 34.0 40.0 31.0 40.0 23 36.18099509249719 37.0 35.0 40.0 32.0 41.0 24 35.72445483500205 36.0 34.0 40.0 31.0 41.0 25 35.41367868540308 35.0 34.0 40.0 30.0 41.0 26 35.606518178430164 36.0 34.0 40.0 30.0 41.0 27 35.92657066710094 36.0 35.0 40.0 31.0 41.0 28 35.85003147441177 36.0 35.0 40.0 31.0 41.0 29 36.010405346578686 37.0 35.0 40.0 31.0 41.0 30 35.65601286536155 36.0 35.0 40.0 30.0 41.0 31 34.97528240846584 36.0 34.0 40.0 29.0 41.0 32 34.96402208532854 36.0 34.0 40.0 29.0 41.0 33 34.730705872404926 36.0 34.0 40.0 27.0 41.0 34 34.44093302057268 36.0 34.0 40.0 24.0 41.0 35 34.26210198962127 36.0 34.0 40.0 23.0 41.0 36 33.88214320387589 36.0 33.0 40.0 21.0 41.0 37 33.80792309595468 36.0 33.0 40.0 21.0 41.0 38 33.67503687673618 35.0 33.0 40.0 21.0 41.0 39 33.456380536599575 35.0 33.0 40.0 19.0 40.0 40 33.24655269067073 35.0 33.0 39.0 18.0 40.0 41 32.97033106070334 35.0 33.0 39.0 18.0 40.0 42 33.14283902325975 35.0 33.0 39.0 18.0 40.0 43 32.952141669302584 35.0 33.0 39.0 18.0 40.0 44 32.81900803928508 35.0 32.0 39.0 18.0 40.0 45 32.720942541190766 35.0 32.0 39.0 18.0 40.0 46 32.55614659246431 35.0 32.0 39.0 18.0 40.0 47 32.542662703918175 35.0 32.0 38.0 18.0 40.0 48 32.568966543170056 35.0 32.0 38.0 18.0 40.0 49 32.633258901308146 35.0 32.0 38.0 18.0 40.0 50 32.80417591847345 35.0 33.0 39.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 3.0 10 0.0 11 1.0 12 10.0 13 9.0 14 31.0 15 67.0 16 146.0 17 358.0 18 620.0 19 1031.0 20 1649.0 21 2405.0 22 3491.0 23 5084.0 24 7494.0 25 11370.0 26 15463.0 27 17771.0 28 17341.0 29 17366.0 30 19908.0 31 24754.0 32 33644.0 33 53664.0 34 85299.0 35 60604.0 36 62452.0 37 86938.0 38 92368.0 39 17273.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.161903747803837 22.895677200938284 26.720836060593722 21.221582990664157 2 36.2863952246584 21.008308618351617 30.150607409170483 12.554688747819498 3 29.008916184111218 18.820288938231858 38.25706921551986 13.913725662137066 4 25.319206907458963 25.463895248146766 34.6201304700492 14.596767374345065 5 20.915921041505513 29.55243699637026 35.18573034728333 14.34591161484089 6 19.27345783211768 37.01531754706286 32.932569596031406 10.778655024788057 7 78.97337045539246 4.6438067439799315 14.083155082726028 2.2996677179015808 8 81.06446147438045 2.819543574052558 13.720181518100135 2.3958134334668517 9 77.56328549013959 4.083687485711243 15.081254090890587 3.2717729332585885 10 47.84204542963355 19.5302639779272 20.455705637521255 12.171984954917994 11 41.5647010557238 20.009896431960463 25.15745035342163 13.267952158894106 12 37.02220746804799 19.38213067674683 29.528322272922296 14.067339582282882 13 21.471342626375247 33.51774311242785 30.30202908173012 14.708885179466783 14 16.358394898953048 36.006727068307306 33.175126132530764 14.45975190020889 15 15.169883529017527 21.792350308637143 47.88448107933744 15.153285083007889 16 17.181427278449892 16.9736335251028 47.439611408456436 18.40532778799087 17 17.842233336569507 17.126307910568826 33.83499265597059 31.19646609689108 18 21.356562806327453 21.128725646478156 37.677846085428754 19.836865461765637 19 26.297262509121317 22.84619504113596 31.258005618417386 19.59853683132534 20 28.056697786143115 21.361260479726408 30.362785657689933 20.21925607644054 21 22.803289624092173 24.763628733475933 33.016188182532794 19.416893459899093 22 22.249903697695324 21.40776744637606 31.384999389302457 24.957329466626163 23 19.550620562656 26.465595805917193 30.77398866921176 23.209794962215046 24 19.349246962954147 22.422308311436957 40.26328893510008 17.96515579050882 25 18.23730766942159 21.984171972427788 39.094194615213574 20.684325742937048 26 17.24077455239002 28.956458831156223 32.867115346672634 20.93565126978112 27 17.581512462927527 28.095218708014546 34.529778551675975 19.793490277381956 28 15.865295781176108 24.773024080273842 41.86049789074464 17.501182247805403 29 16.418211940233068 22.96739501482899 40.28364551982888 20.330747525109064 30 18.91847031227001 25.420833241989683 37.03598731001826 18.624709135722046 31 27.166645266154514 23.029247714581892 30.45392052162965 19.35018649763394 32 26.60856166635871 24.1150366261936 31.16264284841861 18.113758859029087 33 25.684842487010933 24.085754462006783 30.612388704287724 19.61701434669456 34 19.594622103492874 25.124879817855543 32.38857901643246 22.891919062219117 35 19.664774026250598 24.155280028311314 34.28769178251651 21.892254162921574 36 28.522550398206114 22.83069271891941 29.2380060568669 19.408750826007573 37 20.768570685891635 28.860939472044144 30.13353919582095 20.236950646243272 38 21.27435352184575 29.835080345874033 27.174787900046038 21.715778232234182 39 21.02991791598681 28.360010898602283 27.983100902892826 22.626970282518077 40 23.169551560097336 24.69895742968366 29.005001456278755 23.126489553940253 41 18.97672146241705 23.719649115114922 29.686790455580365 27.616838966887663 42 21.939074307797824 25.81496804016198 26.314800489810747 25.93115716222945 43 21.61540461060985 25.32813248691698 27.995314853730108 25.06114804874306 44 20.434096339886064 27.526173870287842 30.303594972863106 21.736134816962984 45 19.102305931282434 32.16512635175552 26.596817482861322 22.135750234100723 46 22.30799825872906 28.63670386180071 28.871274353521848 20.184023525948383 47 21.73660458430288 25.679518457158785 29.9735051220299 22.61037183650844 48 22.421525365870462 23.815325063340296 31.826267510577594 21.936882060211644 49 21.202009351501847 23.188342253693154 33.13566567597954 22.473982718825454 50 20.01725612028549 28.70685578455843 29.911026065823798 21.364862029332272 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 202.0 1 528.5 2 855.0 3 7999.0 4 15143.0 5 10617.5 6 6092.0 7 6150.0 8 6208.0 9 6596.5 10 6985.0 11 6929.5 12 6874.0 13 6486.5 14 6099.0 15 5743.5 16 5388.0 17 4973.5 18 4559.0 19 4190.0 20 3821.0 21 3656.5 22 3492.0 23 3320.5 24 3149.0 25 3274.5 26 3400.0 27 3676.0 28 3952.0 29 4912.5 30 5873.0 31 6894.5 32 7916.0 33 9115.0 34 10314.0 35 12785.0 36 15256.0 37 15950.5 38 16645.0 39 20715.5 40 24786.0 41 33845.5 42 42905.0 43 50109.0 44 57313.0 45 58193.0 46 59073.0 47 56685.0 48 54297.0 49 52431.5 50 50566.0 51 48217.5 52 45869.0 53 40911.0 54 35953.0 55 32638.5 56 29324.0 57 27392.0 58 25460.0 59 23602.0 60 21744.0 61 19783.0 62 17822.0 63 15747.5 64 13673.0 65 11782.0 66 9891.0 67 8175.5 68 6460.0 69 5358.5 70 4257.0 71 3621.0 72 2985.0 73 2457.5 74 1930.0 75 1503.0 76 1076.0 77 812.0 78 548.0 79 392.5 80 237.0 81 168.0 82 99.0 83 72.0 84 45.0 85 39.5 86 34.0 87 27.5 88 21.0 89 15.0 90 9.0 91 9.0 92 9.0 93 6.5 94 4.0 95 2.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 638614.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.951956436272724 #Duplication Level Percentage of deduplicated Percentage of total 1 75.20271339721486 21.02062968768453 2 7.845935415648307 4.386184898800217 3 3.498653407859577 2.93382622926324 4 2.108206399378564 2.3571397373640397 5 1.421826853777192 1.9871421138351393 6 1.0267080423001764 1.721909908268723 7 0.7756413172351057 1.5176484616670205 8 0.6357836079698764 1.4217116570296224 9 0.47300488185252976 1.1899270666517616 >10 5.938944262936014 38.65391280115646 >50 1.0049471591461274 18.46913535167501 >100 0.06650800043704026 2.7592397620871236 >500 5.636271223477989E-4 0.09058826442846273 >1k 0.0 0.0 >5k 5.636271223477989E-4 1.4910040600886456 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9464 1.4819593682568812 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.02646356014744431 0.0 2 0.0 0.0 0.0 0.09833796315144985 0.0 3 0.0 0.0 0.0 0.1365457067962807 0.0 4 0.0 0.0 0.0 0.2137441396524348 0.0 5 0.0 0.0 0.0 0.3814510799951144 0.0 6 0.0 0.0 0.0 0.5546386393032411 0.0 7 0.0 0.0 0.0 0.6683223355579426 0.0 8 0.0 0.0 0.0 0.9904261416129305 0.0 9 0.0 0.0 0.0 1.124623011709734 0.0 10 0.0 0.0 0.0 1.3607593945638523 0.0 11 0.0 0.0 0.0 1.55868803377314 0.0 12 0.0 0.0 0.0 1.737512801160012 0.0 13 1.5658911329848705E-4 0.0 0.0 1.8079779021443314 0.0 14 1.5658911329848705E-4 0.0 0.0 1.835224407858268 0.0 15 3.131782265969741E-4 0.0 0.0 1.8692042454440398 0.0 16 3.131782265969741E-4 0.0 0.0 1.9550150795316106 0.0 17 3.131782265969741E-4 0.0 0.0 2.0577375378554184 0.0 18 3.131782265969741E-4 0.0 0.0 2.2302987407103507 0.0 19 4.697673398954611E-4 0.0 0.0 2.295283222729223 0.0 20 7.829455664924352E-4 0.0 0.0 2.371855299132183 0.0 21 9.395346797909222E-4 0.0 0.0 2.458292489672948 0.0 22 9.395346797909222E-4 0.0 0.0 2.556317274597801 0.0 23 9.395346797909222E-4 0.0 0.0 2.657317252675325 0.0 24 9.395346797909222E-4 0.0 0.0 2.7343590964181805 0.0 25 9.395346797909222E-4 0.0 0.0 2.8040412518360074 0.0 26 0.0010961237930894093 0.0 0.0 2.8720009270075506 0.0 27 0.0012527129063878964 0.0 0.0 2.9471637013908243 0.0 28 0.0012527129063878964 0.0 0.0 3.0201342281879193 0.0 29 0.0012527129063878964 0.0 0.0 3.106101651388789 0.0 30 0.0012527129063878964 0.0 0.0 3.214931085131237 0.0 31 0.0012527129063878964 0.0 0.0 3.310293855130016 0.0 32 0.0012527129063878964 0.0 0.0 3.3895279464590504 0.0 33 0.0012527129063878964 0.0 0.0 3.4801930430588746 0.0 34 0.0012527129063878964 0.0 0.0 3.574303100151265 0.0 35 0.0015658911329848703 0.0 0.0 3.6934674153714138 0.0 36 0.0015658911329848703 0.0 0.0 3.782566620838253 0.0 37 0.0015658911329848703 0.0 0.0 3.8773030343838375 0.0 38 0.0015658911329848703 0.0 0.0 3.986445646352883 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTGCTA 20 7.8538497E-4 44.000004 44 ACGCATT 20 7.8538497E-4 44.000004 11 TAGCACG 20 7.8538497E-4 44.000004 1 CTAGTAG 40 8.301868E-9 44.000004 1 TACCGAA 20 7.8538497E-4 44.000004 22 TCCGATT 25 4.4406108E-5 44.0 1 ACGTCGA 25 4.4406108E-5 44.0 14 ACGTATG 25 4.4406108E-5 44.0 1 ATAACGG 50 2.7284841E-11 44.0 2 TAATGCG 30 2.5259433E-6 44.0 1 CCCGCAT 25 4.4406108E-5 44.0 42 TGCGTAG 45 4.783942E-10 44.0 1 TAATCGG 25 4.4406108E-5 44.0 2 CGTTTTT 6550 0.0 43.09313 1 TTTACGG 90 0.0 41.555557 2 AATAGCG 75 0.0 41.066666 1 GCATAGG 145 0.0 40.965515 2 ATAGCGG 135 0.0 40.74074 2 ACGTAGG 65 0.0 40.615383 2 TGCATAG 60 3.6379788E-12 40.333332 1 >>END_MODULE