##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546067_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 629394 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.843470068033696 31.0 28.0 33.0 16.0 33.0 2 28.552474284788225 31.0 28.0 33.0 16.0 33.0 3 28.124634171917748 31.0 26.0 33.0 16.0 34.0 4 32.18596777217451 35.0 32.0 35.0 25.0 37.0 5 33.6639481787243 35.0 33.0 35.0 28.0 37.0 6 33.503166537971445 35.0 33.0 37.0 28.0 37.0 7 34.52350514939767 35.0 35.0 37.0 32.0 37.0 8 34.95549369711183 35.0 35.0 37.0 32.0 37.0 9 36.7871762361891 39.0 37.0 39.0 32.0 39.0 10 36.413032218292514 39.0 35.0 39.0 32.0 39.0 11 36.429061923056146 38.0 35.0 39.0 32.0 39.0 12 35.15416575308948 37.0 34.0 39.0 30.0 39.0 13 35.18470624124158 37.0 34.0 39.0 27.0 39.0 14 35.850548305195154 38.0 34.0 40.0 27.0 41.0 15 36.42231575134177 38.0 35.0 40.0 31.0 41.0 16 36.03428218254384 37.0 34.0 40.0 31.0 41.0 17 35.60448780890825 37.0 34.0 40.0 30.0 41.0 18 35.2674572684201 37.0 33.0 39.0 29.0 40.0 19 34.719001134424545 36.0 33.0 39.0 27.0 40.0 20 35.3174529785794 35.0 34.0 39.0 30.0 40.0 21 35.4439858022161 36.0 34.0 39.0 30.0 40.0 22 35.78789279846964 36.0 34.0 40.0 31.0 41.0 23 36.16711312786585 37.0 35.0 40.0 31.0 41.0 24 35.73224244273062 36.0 34.0 40.0 31.0 41.0 25 35.43240323231553 35.0 34.0 40.0 30.0 41.0 26 35.611076686463484 36.0 34.0 40.0 30.0 41.0 27 35.92836601556418 36.0 35.0 40.0 31.0 41.0 28 35.85684801571035 36.0 35.0 40.0 31.0 41.0 29 36.00480779924816 36.0 35.0 40.0 31.0 41.0 30 35.66576262245906 36.0 35.0 40.0 30.0 41.0 31 34.94731122317658 36.0 34.0 40.0 29.0 41.0 32 34.954708815146 36.0 34.0 40.0 29.0 41.0 33 34.733915480605155 36.0 34.0 40.0 26.0 41.0 34 34.454357683740234 36.0 34.0 40.0 24.0 41.0 35 34.237943164377164 36.0 34.0 40.0 23.0 41.0 36 33.895289754907104 36.0 33.0 40.0 21.0 41.0 37 33.845912099575145 36.0 33.0 40.0 21.0 41.0 38 33.69363069873561 35.0 33.0 40.0 21.0 41.0 39 33.452557539474476 35.0 33.0 40.0 19.0 41.0 40 33.287115860653266 35.0 33.0 40.0 18.0 40.0 41 32.98406244737001 35.0 33.0 39.0 18.0 40.0 42 33.19734220535944 35.0 33.0 39.0 18.0 40.0 43 32.99757067909767 35.0 33.0 39.0 18.0 40.0 44 32.865715275328334 35.0 33.0 39.0 18.0 40.0 45 32.77916058939233 35.0 32.0 39.0 18.0 40.0 46 32.63046676644518 35.0 32.0 39.0 18.0 40.0 47 32.62388106654973 35.0 32.0 39.0 18.0 40.0 48 32.631520160662475 35.0 32.0 39.0 18.0 40.0 49 32.71046117376397 35.0 32.0 39.0 18.0 40.0 50 32.81258798145518 35.0 33.0 39.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 2.0 11 6.0 12 5.0 13 8.0 14 20.0 15 63.0 16 138.0 17 336.0 18 611.0 19 1080.0 20 1633.0 21 2517.0 22 3501.0 23 4982.0 24 7347.0 25 11218.0 26 15580.0 27 17742.0 28 17090.0 29 17302.0 30 19309.0 31 24182.0 32 33063.0 33 52560.0 34 84089.0 35 59011.0 36 60346.0 37 84097.0 38 91970.0 39 19584.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.998846509499614 22.976863459136883 26.7188756168632 21.305414414500298 2 36.42757954476846 20.943637848470114 30.109756368824613 12.519026237936808 3 28.987406934289172 18.84161590355167 38.25616386555957 13.914813296599588 4 25.39013717957273 25.44828835355914 34.64109921607133 14.5204752507968 5 20.901057207409032 29.420363079406542 35.32540824984032 14.353171463344106 6 19.282198432142664 37.06501809677245 32.87733915480605 10.775444316278833 7 78.9082832057503 4.7350308391881715 14.05526585890555 2.301420096155985 8 81.02222137484628 2.8198552893735878 13.78246376673435 2.3754595690457805 9 77.58590008802118 4.1362008535194175 15.076247946437366 3.20165111202204 10 47.86381821243927 19.668284095495032 20.47604521174336 11.991852480322342 11 41.63369844644214 19.976517094220792 25.20456184838114 13.185222610955934 12 37.04309224428577 19.787128571292385 29.46087824161018 13.708900942811658 13 21.36753766321255 33.563872550421515 30.331874787494 14.73671499887193 14 16.183821262992655 36.085981118345586 33.25532178571769 14.47487583294407 15 15.16236252649374 21.64161081929602 47.975512953730096 15.220513700480145 16 17.11424004677515 16.881158701862425 47.55065984105345 18.453941410308964 17 17.81189525162299 17.16063387957305 33.82094522667836 31.206525642125598 18 21.35562143903501 21.125082221946826 37.71310180904172 19.806194529976455 19 26.345659475622586 22.813690629399073 31.175702342253025 19.66494755272532 20 28.119746931175065 21.502588203891364 30.32488393597651 20.05278092895706 21 22.769362275458615 24.70249160303403 32.9750521930619 19.553093928445456 22 22.27285293472769 21.40455739965745 31.503319065640916 24.819270599973944 23 19.514326479121184 26.382996978045547 30.969631105476058 23.133045437357204 24 19.311115136146835 22.279684903256147 40.42634661277356 17.982853347823465 25 18.252636663203017 21.936974295910034 39.18435828749559 20.62603075339136 26 17.30982500627588 29.029510926383157 32.85588995128648 20.804774116054492 27 17.617263590056467 28.054763788660203 34.589938893602415 19.73803372768091 28 15.890999914203185 24.680565750547352 41.89426654845772 17.53416778679174 29 16.36177021071062 22.980676650873697 40.2882772953031 20.36927584311258 30 18.926618302684805 25.409838670212935 37.02879277527272 18.634750251829537 31 27.16104697534454 22.894562070817326 30.5657505473519 19.378640406486237 32 26.5669834793468 24.225524869954274 31.210021067884348 17.997470582814582 33 25.666911346469778 24.201851304588224 30.55542315306469 19.575814195877303 34 19.722939843722692 25.1462517914057 32.449467265337766 22.681341099533835 35 19.694499788685622 24.121933161104174 34.3868864336171 21.796680616593104 36 28.47945801834781 22.746165359059667 29.22017051322383 19.554206109368693 37 20.78030613574327 28.838533573564412 30.176646107207887 20.20451418348443 38 21.409641655306533 29.780709698535418 27.105279046193644 21.70436959996441 39 21.131755307486248 28.285938537704524 28.129438793506132 22.452867361303095 40 23.271750286783796 24.640686120299844 29.00679065895131 23.08077293396505 41 19.009078573993396 23.712173932385756 29.672987031970433 27.605760461650412 42 22.014191428580506 25.758269065164267 26.379342669297767 25.848196836957456 43 21.79842832947248 25.257787649707495 27.944657877259715 24.999126143560314 44 20.427585900088022 27.58161024731726 30.3309214895598 21.659882363034917 45 19.03783639500853 32.2508635290454 26.62068592964026 22.09061414630581 46 22.327349799966317 28.670594254155585 28.917021770147155 20.085034175730943 47 21.834653650972204 25.7002767741669 29.918620133016837 22.54644944184406 48 22.486232789000212 23.899020327489616 31.858581429120708 21.75616545438946 49 21.157653234698774 23.36565013330283 33.13901943774488 22.33767719425352 50 20.082809813884467 28.8164488380887 29.844262894148976 21.256478453877858 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 204.0 1 525.5 2 847.0 3 7984.0 4 15121.0 5 10645.5 6 6170.0 7 6266.5 8 6363.0 9 6641.0 10 6919.0 11 6844.0 12 6769.0 13 6415.0 14 6061.0 15 5592.0 16 5123.0 17 4722.5 18 4322.0 19 4013.0 20 3704.0 21 3551.0 22 3398.0 23 3228.5 24 3059.0 25 3182.5 26 3306.0 27 3573.5 28 3841.0 29 4765.0 30 5689.0 31 6818.0 32 7947.0 33 8923.5 34 9900.0 35 12385.5 36 14871.0 37 15595.0 38 16319.0 39 20595.0 40 24871.0 41 33765.5 42 42660.0 43 49607.5 44 56555.0 45 57422.0 46 58289.0 47 55781.0 48 53273.0 49 51453.0 50 49633.0 51 47663.5 52 45694.0 53 40675.0 54 35656.0 55 32281.5 56 28907.0 57 26941.0 58 24975.0 59 23069.5 60 21164.0 61 19283.0 62 17402.0 63 15453.5 64 13505.0 65 11483.0 66 9461.0 67 7929.0 68 6397.0 69 5353.0 70 4309.0 71 3573.5 72 2838.0 73 2338.5 74 1839.0 75 1435.0 76 1031.0 77 775.0 78 519.0 79 386.5 80 254.0 81 185.5 82 117.0 83 81.5 84 46.0 85 41.5 86 37.0 87 25.5 88 14.0 89 9.5 90 5.0 91 5.5 92 6.0 93 4.5 94 3.0 95 2.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 629394.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.697229251207496 #Duplication Level Percentage of deduplicated Percentage of total 1 75.1786766566101 20.822410421605312 2 7.652673229379649 4.239156896374131 3 3.5856498537637083 2.979376980427561 4 2.174681207356941 2.409305757938316 5 1.3955771857624162 1.9326810625908315 6 0.9979020772918838 1.6583473563005693 7 0.7764806333351877 1.5054453477425238 8 0.591715433990791 1.311110242137654 9 0.49884331887097577 1.2434919986882356 >10 6.044978389808916 38.80299660980796 >50 1.0360540839734738 18.801665586463194 >100 0.06561675865165331 2.713349909541564 >500 5.755856022074851E-4 0.08752227381541237 >1k 0.0 0.0 >5k 5.755856022074851E-4 1.4931395565667618 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9366 1.4880980752914708 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.02637457617962675 0.0 2 0.0 0.0 0.0 0.09564755939840545 0.0 3 0.0 0.0 0.0 0.13505054067881167 0.0 4 0.0 0.0 0.0 0.20861336460150556 0.0 5 0.0 0.0 0.0 0.3660664067340966 0.0 6 0.0 0.0 0.0 0.5252671617460605 0.0 7 0.0 0.0 0.0 0.6387096159162623 0.0 8 0.0 0.0 0.0 0.9434471888832751 0.0 9 0.0 0.0 0.0 1.0670581543516462 0.0 10 0.0 0.0 0.0 1.3020460951327786 0.0 11 0.0 0.0 0.0 1.4904813201269793 0.0 12 0.0 0.0 0.0 1.659056171491943 0.0 13 0.0 0.0 0.0 1.732460112425603 0.0 14 0.0 0.0 0.0 1.7588346886052297 0.0 15 0.0 0.0 0.0 1.7942655951597886 0.0 16 0.0 0.0 0.0 1.8735482066877027 0.0 17 1.588829890338961E-4 0.0 0.0 1.9750744366803623 0.0 18 1.588829890338961E-4 0.0 0.0 2.1366584365278345 0.0 19 1.588829890338961E-4 0.0 0.0 2.2022771109988337 0.0 20 1.588829890338961E-4 0.0 0.0 2.271073445250511 0.0 21 1.588829890338961E-4 0.0 0.0 2.3622722809559673 0.0 22 1.588829890338961E-4 0.0 0.0 2.4577609573653385 0.0 23 1.588829890338961E-4 0.0 0.0 2.563894794039981 0.0 24 1.588829890338961E-4 0.0 0.0 2.646990597304709 0.0 25 3.177659780677922E-4 0.0 0.0 2.714515867644115 0.0 26 3.177659780677922E-4 0.0 0.0 2.7761624673892666 0.0 27 3.177659780677922E-4 0.0 0.0 2.850360823268096 0.0 28 3.177659780677922E-4 0.0 0.0 2.9185216255636375 0.0 29 3.177659780677922E-4 0.0 0.0 2.999869715948992 0.0 30 4.766489671016883E-4 0.0 0.0 3.1050502546894316 0.0 31 4.766489671016883E-4 0.0 0.0 3.1960902074058537 0.0 32 4.766489671016883E-4 0.0 0.0 3.278073829747344 0.0 33 4.766489671016883E-4 0.0 0.0 3.3635528778475803 0.0 34 6.355319561355844E-4 0.0 0.0 3.4539572986078673 0.0 35 6.355319561355844E-4 0.0 0.0 3.570418529569713 0.0 36 6.355319561355844E-4 0.0 0.0 3.66082295033 0.0 37 6.355319561355844E-4 0.0 0.0 3.7517040200573883 0.0 38 6.355319561355844E-4 0.0 0.0 3.8572023247758955 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGTTTCG 20 7.853763E-4 44.000004 1 GACACGA 20 7.853763E-4 44.000004 25 CTATACG 20 7.853763E-4 44.000004 16 ACGTACA 20 7.853763E-4 44.000004 28 CACACGT 20 7.853763E-4 44.000004 25 ATCGGGT 20 7.853763E-4 44.000004 4 CAATCTA 20 7.853763E-4 44.000004 30 CGATCTA 20 7.853763E-4 44.000004 10 GTCGGAC 20 7.853763E-4 44.000004 10 TCGTTGA 70 0.0 44.0 24 ATTCGAT 25 4.4405373E-5 44.0 14 TATGCGT 25 4.4405373E-5 44.0 20 GTTGTAG 50 2.7284841E-11 44.0 1 ACGTAGG 70 0.0 44.0 2 TGCGTTA 25 4.4405373E-5 44.0 22 CGTTTTT 6520 0.0 43.22393 1 TACGGGA 110 0.0 42.0 4 AATCGTT 75 0.0 41.066666 22 TCACGAC 70 0.0 40.857143 25 GTTGATC 180 0.0 40.333332 16 >>END_MODULE