##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546063_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 698517 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.98115292827519 31.0 28.0 33.0 23.0 33.0 2 28.58628637527791 31.0 28.0 33.0 16.0 33.0 3 28.1120115902691 31.0 26.0 33.0 16.0 34.0 4 31.94372363163674 35.0 32.0 35.0 25.0 37.0 5 33.59201565602555 35.0 33.0 35.0 28.0 37.0 6 33.4920653326977 35.0 33.0 37.0 28.0 37.0 7 34.283376066724216 35.0 33.0 37.0 31.0 37.0 8 34.74363830801541 35.0 35.0 37.0 32.0 37.0 9 36.69448130825735 39.0 37.0 39.0 32.0 39.0 10 36.482984666085436 39.0 35.0 39.0 32.0 39.0 11 36.42837182201722 39.0 35.0 39.0 32.0 39.0 12 35.22736311356775 37.0 34.0 39.0 30.0 39.0 13 34.9932084687989 37.0 33.0 39.0 27.0 39.0 14 35.75945467325777 38.0 33.0 40.0 27.0 41.0 15 36.40063448706331 38.0 35.0 40.0 31.0 41.0 16 36.070172952125716 37.0 34.0 40.0 31.0 41.0 17 35.614546245832244 37.0 34.0 40.0 30.0 41.0 18 35.262035140161224 37.0 33.0 39.0 29.0 40.0 19 34.625619705748036 36.0 33.0 39.0 27.0 40.0 20 35.11099801436472 35.0 34.0 39.0 30.0 40.0 21 35.23361206670704 35.0 34.0 39.0 30.0 40.0 22 35.55863493658708 35.0 34.0 39.0 31.0 40.0 23 35.91877076721111 35.0 35.0 40.0 31.0 41.0 24 35.518847787527 35.0 34.0 40.0 31.0 41.0 25 35.17954895872255 35.0 34.0 39.0 30.0 41.0 26 35.27015663183573 35.0 34.0 39.0 30.0 41.0 27 35.59782081180558 35.0 34.0 40.0 31.0 41.0 28 35.56789741695621 36.0 35.0 40.0 31.0 41.0 29 35.71691598057026 36.0 35.0 40.0 31.0 41.0 30 35.3635101221588 36.0 34.0 40.0 30.0 41.0 31 34.5908775305397 35.0 34.0 39.0 28.0 41.0 32 34.452720549392495 35.0 34.0 39.0 26.0 41.0 33 34.09722598018373 35.0 33.0 40.0 23.0 41.0 34 33.68717439947775 35.0 33.0 40.0 20.0 41.0 35 33.38681520993762 35.0 33.0 40.0 18.0 41.0 36 32.97400063276914 35.0 33.0 40.0 15.0 41.0 37 32.87983542275993 35.0 33.0 40.0 15.0 41.0 38 32.742902463361666 35.0 33.0 40.0 15.0 41.0 39 32.52896923052696 35.0 32.0 39.0 14.0 40.0 40 32.366775611760346 35.0 32.0 39.0 13.0 40.0 41 32.076659551592876 35.0 31.0 39.0 12.0 40.0 42 32.290097449310466 35.0 32.0 39.0 10.0 40.0 43 32.07506044949515 35.0 31.0 39.0 10.0 40.0 44 31.904948626876653 35.0 31.0 39.0 10.0 40.0 45 31.852428788418894 35.0 31.0 39.0 10.0 40.0 46 31.681450845147648 35.0 31.0 38.0 10.0 40.0 47 31.68063483064836 35.0 31.0 38.0 10.0 40.0 48 31.719301033475205 35.0 31.0 38.0 10.0 40.0 49 31.76959472711473 35.0 31.0 38.0 10.0 40.0 50 31.858049267233294 35.0 31.0 39.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 0.0 11 4.0 12 5.0 13 7.0 14 37.0 15 85.0 16 221.0 17 436.0 18 865.0 19 1520.0 20 2321.0 21 3325.0 22 4909.0 23 6993.0 24 10455.0 25 15828.0 26 21719.0 27 23988.0 28 22316.0 29 20709.0 30 22588.0 31 27481.0 32 37274.0 33 58541.0 34 96652.0 35 62617.0 36 59379.0 37 83629.0 38 94282.0 39 20330.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.983762743068528 22.128165814146257 27.530754441194706 24.357317001590513 2 37.49844313023162 20.91302001239769 29.265858955472808 12.322677901897878 3 26.508588910506113 18.653948293312833 42.622012062698545 12.215450733482507 4 24.000847509795754 25.14541521537772 37.99191716164388 12.861820113182642 5 19.82127850861182 28.74590024294326 38.97242300473718 12.46039824370774 6 17.780383297757965 35.93198161247329 36.277427750505716 10.010207339263038 7 74.27879350108874 5.236665678859642 18.056969264885463 2.427571555166159 8 76.30408422414916 3.6681999149627 17.525414556839706 2.502301304048434 9 73.2156840849972 4.842831312623744 18.601408412393685 3.340076189985355 10 46.37052498364392 23.15348087448122 22.171113945687793 8.304880196187064 11 41.82403577865678 17.076320261353697 30.21386737903301 10.885776580956511 12 37.598655437161874 18.899611605730428 32.300001288443944 11.201731668663754 13 18.699043831431446 37.27239279788466 32.26020268654879 11.768360684135104 14 12.76175096669086 38.58245397034002 35.917808729064575 12.737986333904544 15 11.863419215280373 20.53121112299343 54.646916252575096 12.958453409151103 16 13.445771541709078 16.140194154186656 53.149887547475586 17.264146756628687 17 14.199224929386114 16.48993510537324 37.21269489504193 32.09814507019872 18 19.008986180722875 20.06307648919067 42.41399994559904 18.513937384487424 19 24.812424035492338 21.427109146949896 34.652986255166304 19.107480562391466 20 27.071352594138727 20.29972069398454 33.68436272846617 18.944563983410568 21 19.27870044680373 25.252928704670037 36.716357654860225 18.75201319366601 22 20.434148345709552 21.76138877078153 33.942910480346214 23.8615524031627 23 16.32845013077706 27.145080219951694 33.9013939531894 22.625075696081844 24 16.99972942677129 20.530495320801066 47.044524327969114 15.425250924458531 25 14.5723010320436 22.12530260537682 44.29613023018767 19.00626613239191 26 14.363716273190203 30.387234670022345 36.78307041918808 18.46597863759937 27 14.817821184022723 30.685437863359088 37.21040432802638 17.286336624591815 28 13.431026016546483 25.30919075698945 46.13760295025032 15.12218027621375 29 13.674541922386998 21.35409732332928 44.924747715517306 20.046613038766413 30 16.34834943172464 26.691834271750007 38.988027492530605 17.971788803994748 31 25.838025416704248 23.527702260646485 33.06161482111387 17.572657501535396 32 26.707295599104963 23.79770284760428 33.62437850474648 15.870623048544271 33 25.314774014089853 24.553160481419923 31.86135770496638 18.270707799523848 34 17.748172199101813 25.22515557960651 34.51870176387976 22.507970457411915 35 19.034755059647797 23.770788685171585 35.90019999513254 21.294256260048073 36 27.70354909043015 22.357651997016536 31.497443870371082 18.441355042182224 37 19.79536646924842 29.82461414682821 32.70342740405746 17.676591979865915 38 19.23818604271621 30.769043559426613 29.215036999815325 20.77773339804185 39 20.06794394409871 29.124416442262678 31.271823019339546 19.535816594299067 40 23.30122244698411 25.097742789366617 28.801160172193374 22.7998745914559 41 17.27488378951407 22.81590856056474 31.362443576892186 28.546764073029003 42 20.83098908115336 24.019458366797085 28.105543601658944 27.044008950390612 43 21.249160721929456 24.947138008094292 29.206304213068545 24.597397056907706 44 18.79610660871532 29.05913528231954 30.339848564888182 21.80490954407695 45 16.798302689841478 34.852265585519035 26.19549703156831 22.15393469307118 46 21.252167091137366 29.951597455752687 29.15161692557232 19.644618527537627 47 20.64029937710893 25.87753769772246 30.689589516074772 22.792573409093837 48 21.257893508676236 22.81905809021112 34.015063341336 21.907985059776642 49 19.88312381803163 22.689784214271093 34.957202186918856 22.46988978077842 50 18.765899756197772 29.943437310759798 30.803831545975257 20.486831387067173 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 257.0 1 511.5 2 766.0 3 9564.0 4 18362.0 5 13417.0 6 8472.0 7 8804.5 8 9137.0 9 9925.0 10 10713.0 11 10845.5 12 10978.0 13 10362.5 14 9747.0 15 9248.0 16 8749.0 17 8145.5 18 7542.0 19 6859.5 20 6177.0 21 5786.5 22 5396.0 23 5150.5 24 4905.0 25 5030.5 26 5156.0 27 5773.5 28 6391.0 29 6925.5 30 7460.0 31 9455.5 32 11451.0 33 12471.0 34 13491.0 35 15947.5 36 18404.0 37 18262.5 38 18121.0 39 24442.5 40 30764.0 41 44139.5 42 57515.0 43 64651.0 44 71787.0 45 69818.5 46 67850.0 47 62763.5 48 57677.0 49 55028.5 50 52380.0 51 50173.5 52 47967.0 53 41807.0 54 35647.0 55 30962.0 56 26277.0 57 22640.0 58 19003.0 59 17132.0 60 15261.0 61 13638.5 62 12016.0 63 10047.0 64 8078.0 65 6824.5 66 5571.0 67 4411.0 68 3251.0 69 2610.5 70 1970.0 71 1781.0 72 1592.0 73 1273.5 74 955.0 75 795.0 76 635.0 77 469.0 78 303.0 79 204.5 80 106.0 81 117.5 82 129.0 83 85.0 84 41.0 85 33.0 86 25.0 87 19.5 88 14.0 89 16.5 90 19.0 91 12.5 92 6.0 93 3.5 94 1.0 95 1.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 698517.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.83318205143843 #Duplication Level Percentage of deduplicated Percentage of total 1 77.88414146736098 21.677634883810434 2 7.095818118980908 3.949983950189821 3 3.115075787352425 2.601074144802239 4 2.003665421671777 2.230735378062509 5 1.3882977092412194 1.9320371441452902 6 0.9395805597547354 1.5690910062987582 7 0.7132358118002147 1.3896135536808598 8 0.5475743205177146 1.2192588599729801 9 0.4494037881378797 1.1257503704862903 >10 4.481157347556723 28.614747709609006 >50 1.0956091454165329 21.272033003761813 >100 0.28540644090131695 10.516716051590091 >500 0.0 0.0 >1k 5.170406538067337E-4 0.1557093935032017 >5k 0.0 0.0 >10k+ 5.170406538067337E-4 1.7456145500867253 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12130 1.7365361186628243 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1082 0.15489959442647783 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0347879865486452 0.0 2 0.0 0.0 0.0 0.1548995944264778 0.0 3 0.0 0.0 0.0 0.19870668859884585 0.0 4 0.0 0.0 0.0 0.2909020109746792 0.0 5 0.0 0.0 0.0 0.5236808839298113 0.0 6 0.0 0.0 0.0 0.6887448694877862 0.0 7 0.0 0.0 0.0 0.822456719020439 0.0 8 0.0 0.0 0.0 1.1746313976610447 0.0 9 0.0 0.0 0.0 1.3229456119178202 0.0 10 0.0 0.0 0.0 1.6377554161172885 0.0 11 0.0 0.0 0.0 1.840756917870288 0.0 12 0.0 0.0 0.0 2.081839096256784 0.0 13 0.0 0.0 0.0 2.1575709682083613 0.0 14 0.0 0.0 0.0 2.1867756976566066 0.0 15 0.0 0.0 0.0 2.239315578575754 0.0 16 0.0 0.0 0.0 2.3392415646290643 0.0 17 1.4316043847179094E-4 0.0 0.0 2.464793269168825 0.0 18 1.4316043847179094E-4 0.0 0.0 2.665217883029332 0.0 19 1.4316043847179094E-4 0.0 0.0 2.7505415043585195 0.0 20 1.4316043847179094E-4 0.0 0.0 2.8401599388418606 0.0 21 1.4316043847179094E-4 0.0 0.0 2.9505366369036117 0.0 22 1.4316043847179094E-4 0.0 0.0 3.061199655842306 0.0 23 1.4316043847179094E-4 0.0 0.0 3.1831723494202717 0.0 24 1.4316043847179094E-4 0.0 0.0 3.2750813509191614 0.0 25 1.4316043847179094E-4 0.0 0.0 3.350813222870739 0.0 26 1.4316043847179094E-4 0.0 0.0 3.427547217891619 0.0 27 1.4316043847179094E-4 0.0 0.0 3.502992768966253 0.0 28 1.4316043847179094E-4 0.0 0.0 3.5863121441568353 0.0 29 1.4316043847179094E-4 0.0 0.0 3.674069492940043 0.0 30 1.4316043847179094E-4 0.0 0.0 3.8023412458107675 0.0 31 2.863208769435819E-4 0.0 0.0 3.9062757241412878 0.0 32 2.863208769435819E-4 0.0 0.0 3.9991868487094804 0.0 33 2.863208769435819E-4 0.0 0.0 4.09911283476279 0.0 34 2.863208769435819E-4 0.0 0.0 4.201902029585536 0.0 35 2.863208769435819E-4 0.0 0.0 4.341197136218589 0.0 36 2.863208769435819E-4 0.0 0.0 4.455296005680606 0.0 37 2.863208769435819E-4 0.0 0.0 4.549781895071988 0.0 38 2.863208769435819E-4 0.0 0.0 4.649707881125298 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTGTACG 65 0.0 44.000004 1 ACAACGA 30 2.5262852E-6 44.0 13 CTATGCG 25 4.4410423E-5 44.0 1 CGGAAAT 20 7.854358E-4 44.0 33 TTGGACG 20 7.854358E-4 44.0 37 CGACGGT 25 4.4410423E-5 44.0 28 GACACGC 25 4.4410423E-5 44.0 35 CGGGGTA 50 2.7284841E-11 44.0 6 AGTGCTA 25 4.4410423E-5 44.0 28 ACGATCT 20 7.854358E-4 44.0 40 TCGGACG 20 7.854358E-4 44.0 1 GTTCGCC 20 7.854358E-4 44.0 34 GTATGCG 30 2.5262852E-6 44.0 1 TATTACG 25 4.4410423E-5 44.0 1 GCTAGCG 35 1.444987E-7 44.0 1 TCGTACA 20 7.854358E-4 44.0 36 CATCGGT 20 7.854358E-4 44.0 31 CCGGTCA 20 7.854358E-4 44.0 31 GGACCGT 20 7.854358E-4 44.0 8 CGCGTAA 25 4.4410423E-5 44.0 31 >>END_MODULE