##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546062_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 604964 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.038453527813225 28.0 25.0 30.0 16.0 33.0 2 26.014652111530605 30.0 25.0 31.0 10.0 33.0 3 26.348820756276407 30.0 25.0 31.0 16.0 33.0 4 27.800854265708374 32.0 19.0 35.0 10.0 35.0 5 31.151571002572055 33.0 30.0 35.0 19.0 35.0 6 29.78638067719732 33.0 28.0 35.0 17.0 36.0 7 29.83109077564946 32.0 28.0 35.0 17.0 35.0 8 32.41034673137575 33.0 32.0 35.0 28.0 35.0 9 27.082447881196238 31.0 23.0 34.0 10.0 35.0 10 32.04324554849545 35.0 31.0 37.0 18.0 38.0 11 33.85583604974841 35.0 32.0 38.0 27.0 39.0 12 33.20443695823222 35.0 31.0 38.0 25.0 39.0 13 32.80271553348629 35.0 31.0 38.0 22.0 39.0 14 32.54515144702825 35.0 30.0 38.0 21.0 40.0 15 31.759157569706627 34.0 27.0 38.0 18.0 40.0 16 30.533906149787427 33.0 27.0 37.0 17.0 40.0 17 30.527763635522113 32.0 26.0 37.0 17.0 40.0 18 31.477854880620995 34.0 28.0 38.0 18.0 39.0 19 31.032901131306986 34.0 27.0 37.0 18.0 39.0 20 31.72921033317685 34.0 29.0 36.0 20.0 39.0 21 32.51618774009693 34.0 31.0 37.0 23.0 39.0 22 32.85142091099636 34.0 31.0 37.0 25.0 39.0 23 34.13741644130891 35.0 33.0 38.0 28.0 40.0 24 33.810124238797684 35.0 33.0 38.0 27.0 40.0 25 32.59574123418914 35.0 31.0 37.0 23.0 39.0 26 26.19186265629029 33.0 19.0 35.0 0.0 38.0 27 29.429650359360227 33.0 23.0 36.0 12.0 39.0 28 30.986992614436563 34.0 27.0 36.0 18.0 39.0 29 32.3484785871556 34.0 30.0 37.0 23.0 39.0 30 32.05472887642901 34.0 30.0 37.0 22.0 39.0 31 30.889747158508605 33.0 29.0 36.0 18.0 38.0 32 31.035235154488532 34.0 29.0 36.0 18.0 39.0 33 30.77443285881474 34.0 29.0 37.0 17.0 39.0 34 30.757226876309996 34.0 29.0 37.0 15.0 39.0 35 29.972568615653163 34.0 27.0 37.0 10.0 39.0 36 29.648317916438003 33.0 26.0 37.0 10.0 39.0 37 29.61120661725326 33.0 26.0 37.0 10.0 39.0 38 29.359394939202993 33.0 26.0 36.0 10.0 38.0 39 29.23763562790513 33.0 25.0 36.0 9.0 38.0 40 29.163193181743047 33.0 25.0 36.0 10.0 38.0 41 28.628430782658143 33.0 23.0 35.0 9.0 38.0 42 28.866800338532542 33.0 24.0 36.0 9.0 38.0 43 28.419593562592155 33.0 23.0 35.0 8.0 38.0 44 28.165702421962298 32.0 23.0 35.0 8.0 38.0 45 27.61330591572391 31.0 23.0 35.0 8.0 38.0 46 27.219001461243973 31.0 23.0 35.0 8.0 38.0 47 27.373159394608606 31.0 23.0 34.0 8.0 37.0 48 27.557762114770465 31.0 23.0 34.0 8.0 37.0 49 27.3731362527357 31.0 23.0 34.0 8.0 37.0 50 29.14253906017548 34.0 24.0 36.0 8.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 6.0 11 10.0 12 36.0 13 102.0 14 215.0 15 473.0 16 985.0 17 1820.0 18 3011.0 19 4765.0 20 6943.0 21 9554.0 22 13117.0 23 17138.0 24 22435.0 25 27349.0 26 31481.0 27 33750.0 28 37436.0 29 44013.0 30 51711.0 31 60747.0 32 64394.0 33 61485.0 34 51184.0 35 37907.0 36 18914.0 37 3889.0 38 92.0 39 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 24.158131723540574 22.994756712796132 27.351214287131135 25.49589727653216 2 37.26254785408719 18.18571022407945 31.007299607910554 13.544442313922811 3 27.947448112614964 14.396724433189412 44.34263857022897 13.313188883966648 4 25.209433949788746 25.103807829887398 37.141879516797694 12.54487870352616 5 19.129733339504497 28.96899650227121 39.80187250811619 12.099397650108106 6 17.586005117659894 34.57511521346725 37.61347782677977 10.225401842093083 7 76.9391236503329 3.716750087608519 17.86188930250395 1.482236959554618 8 79.69151883417857 2.1290523072447285 16.860176803908995 1.3192520546677158 9 68.01264207456973 2.859839593760951 16.69901018903604 12.42850814263328 10 48.02153516572887 22.866980514543016 21.888244589760713 7.2232397299674025 11 43.49911730284777 16.276671008522822 30.331061021812864 9.893150666816537 12 38.59948691161788 18.63598495117065 32.49085896020259 10.27366917700888 13 18.084712478759066 38.54146693026362 32.32539456893303 11.048426022044287 14 11.987490164704015 38.94314372425466 36.5833338843303 12.48603222671101 15 10.357475816742815 18.760785765764574 55.19204448529169 15.689693932200925 16 11.792767834119056 14.277874385913872 53.451114446479465 20.47824333348761 17 13.343603916927288 15.453977426755971 37.8888661143473 33.313552541969436 18 18.5756507825259 19.495540230493056 43.78491943322248 18.143889553758573 19 25.89740877143103 20.41014010751053 35.28127293524904 18.411178185809405 20 27.692061015200903 19.774234499904125 34.16087568847072 18.37282879642425 21 18.84376591003762 25.173398747694076 37.409994644309414 18.57284069795889 22 19.98780092699731 21.3262276763576 34.04962939943534 24.63634199720975 23 15.47249092507984 27.153847171071337 34.682063726106016 22.691598177742808 24 15.961776237924902 19.7013376002539 49.587413465925245 14.749472695895955 25 13.840658287104688 20.88504439933616 46.289365978802046 18.98493133475711 26 11.139671120926204 42.20432951382231 30.570744705470076 16.08525465978141 27 13.673375605821173 31.970332118936 37.835309208481824 16.520983066760998 28 12.677283276360246 25.206293267037378 47.64911631105322 14.467307145549157 29 12.707202412044353 21.03282178774274 46.25382667398391 20.006149126228998 30 15.893838311039996 26.97036517875444 39.529790202392206 17.606006307813356 31 26.74291362791836 23.203198868031816 33.485132999649565 16.568754504400264 32 27.419482812200396 22.887312302880833 34.15938799664112 15.533816888277649 33 25.890962106836106 23.978451610343757 31.897600518377956 18.23298576444218 34 17.1568886743674 24.717834449653203 34.544369582322254 23.580907293657145 35 18.602759833642992 23.27940174952559 36.26595962734972 21.851878789481688 36 28.385986604161573 21.70013422286285 31.200864844850273 18.71301432812531 37 18.92591955884978 30.760673362381898 32.2437368173974 18.069670261370923 38 18.423740916814886 31.729160743449196 28.873453626992678 20.973644712743237 39 19.63224257972375 29.557626569514877 30.89423502886122 19.915895821900147 40 23.396764104971535 24.31698415112304 28.666499163586597 23.619752580318828 41 16.722152061940875 21.805925641856376 31.262190808048086 30.209731488154667 42 20.015240576298755 23.048974815030316 27.312203701377275 29.623580907293658 43 20.65164208118169 23.828855931923222 29.19793574493689 26.321566241958198 44 17.98272293888562 28.507812035096304 30.594878372927976 22.9145866530901 45 15.911855912087331 36.05437678936268 25.469945319060304 22.56382197948969 46 20.409644210234 29.980461647304637 28.578560046548223 21.031334095913145 47 19.898374118129343 25.344483308097672 29.94260815519601 24.814534418576972 48 20.289637069313216 22.18479116112694 35.01117421863119 22.51439755092865 49 19.43520606184831 22.47257688060777 34.70685858993263 23.385358467611294 50 18.227696193492505 30.868283071389374 30.37073280393544 20.53328793118268 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 131.0 1 303.5 2 476.0 3 5374.5 4 10273.0 5 8467.0 6 6661.0 7 6832.5 8 7004.0 9 7684.5 10 8365.0 11 9053.5 12 9742.0 13 9812.0 14 9882.0 15 9535.5 16 9189.0 17 8930.5 18 8672.0 19 8009.0 20 7346.0 21 6899.5 22 6453.0 23 6109.5 24 5766.0 25 5715.0 26 5664.0 27 5961.5 28 6259.0 29 6679.0 30 7099.0 31 8602.5 32 10106.0 33 11170.5 34 12235.0 35 13688.5 36 15142.0 37 15343.0 38 15544.0 39 20610.0 40 25676.0 41 36877.5 42 48079.0 43 54074.0 44 60069.0 45 59406.0 46 58743.0 47 53920.5 48 49098.0 49 46959.5 50 44821.0 51 42273.5 52 39726.0 53 35308.5 54 30891.0 55 27063.5 56 23236.0 57 20215.0 58 17194.0 59 15413.5 60 13633.0 61 12214.5 62 10796.0 63 9029.0 64 7262.0 65 6165.0 66 5068.0 67 4083.0 68 3098.0 69 2482.5 70 1867.0 71 1673.5 72 1480.0 73 1206.5 74 933.0 75 782.0 76 631.0 77 464.0 78 297.0 79 209.5 80 122.0 81 118.0 82 114.0 83 87.0 84 60.0 85 44.5 86 29.0 87 19.5 88 10.0 89 10.5 90 11.0 91 7.5 92 4.0 93 4.5 94 5.0 95 3.0 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 604964.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.30925728824629 #Duplication Level Percentage of deduplicated Percentage of total 1 83.70057737635943 36.250098407675175 2 6.382155327293757 5.528128142466341 3 2.492919036031335 3.2389941579074404 4 1.314180532762853 2.2766473126652396 5 0.8498907258729473 1.8404068056862941 6 0.618361118420009 1.606845646481994 7 0.48443505907790707 1.4686365829136308 8 0.3664008739643647 1.269483977692878 9 0.307276640031939 1.1977130755629979 >10 3.0017683370875337 28.434490806179085 >50 0.41912461792474737 12.251861992993437 >100 0.062493730304507306 3.5699487419067797 >500 0.0 0.0 >1k 0.0 0.0 >5k 4.166248686967154E-4 1.0667443498687328 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5912 0.9772482329527047 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.026117256564026952 0.0 2 0.0 0.0 0.0 0.1125686817727997 0.0 3 0.0 0.0 0.0 0.1451326029317447 0.0 4 0.0 0.0 0.0 0.19670591969108905 0.0 5 0.0 0.0 0.0 0.33489596075138356 0.0 6 0.0 0.0 0.0 0.4372160988091853 0.0 7 0.0 0.0 0.0 0.5053193247862683 0.0 8 0.0 0.0 0.0 0.7132655827454195 0.0 9 0.0 0.0 0.0 0.8298014427304765 0.0 10 0.0 0.0 0.0 1.0240278760389048 0.0 11 0.0 0.0 0.0 1.165523898942747 0.0 12 0.0 0.0 0.0 1.3085076136761857 0.0 13 0.0 0.0 0.0 1.365701099569561 0.0 14 0.0 0.0 0.0 1.3860328879073796 0.0 15 0.0 0.0 0.0 1.4142990326697127 0.0 16 0.0 0.0 0.0 1.471492518563088 0.0 17 0.0 0.0 0.0 1.5652171038276659 0.0 18 0.0 0.0 0.0 1.6868772356702217 0.0 19 0.0 0.0 0.0 1.7417565342731138 0.0 20 0.0 0.0 0.0 1.796305234691651 0.0 21 0.0 0.0 0.0 1.8564741042442194 0.0 22 0.0 0.0 0.0 1.9245773302213025 0.0 23 0.0 0.0 0.0 1.9973089307793521 0.0 24 0.0 0.0 0.0 2.0465680602482132 0.0 25 0.0 0.0 0.0 2.0897111233065107 0.0 26 0.0 0.0 0.0 2.1359948691161788 0.0 27 0.0 0.0 0.0 2.194345448654796 0.0 28 0.0 0.0 0.0 2.255175514576074 0.0 29 0.0 0.0 0.0 2.3191462632487223 0.0 30 0.0 0.0 0.0 2.4110525584993487 0.0 31 0.0 0.0 0.0 2.4892390290992523 0.0 32 0.0 0.0 0.0 2.5647807142243173 0.0 33 0.0 0.0 0.0 2.627924967436079 0.0 34 0.0 0.0 0.0 2.7062767371281597 0.0 35 0.0 0.0 0.0 2.8112416606607997 0.0 36 0.0 0.0 0.0 2.8943871040260247 0.0 37 0.0 0.0 0.0 2.981830323787862 0.0 38 0.0 0.0 0.0 3.0661328607983287 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTAAGGC 65 0.0 44.000004 3 TGATCGG 45 4.783942E-10 44.0 2 AACGTAC 20 7.853522E-4 44.0 34 CAACGTA 20 7.853522E-4 44.0 33 ATAGGCG 80 0.0 44.0 4 CACGGCA 20 7.853522E-4 44.0 4 ACGTTAG 25 4.4403307E-5 44.0 1 CGTGAAT 20 7.853522E-4 44.0 39 GCTATCG 20 7.853522E-4 44.0 1 TCGATTG 25 4.4403307E-5 44.0 1 TCGATAT 20 7.853522E-4 44.0 16 TCGATAG 75 0.0 44.0 1 GCTTCGT 20 7.853522E-4 44.0 17 GTGCTAG 25 4.4403307E-5 44.0 1 CGAGGTA 20 7.853522E-4 44.0 36 ACTACGG 25 4.4403307E-5 44.0 2 CGAATAA 30 2.5257214E-6 44.0 29 CTCGAGG 25 4.4403307E-5 44.0 2 GTATACG 30 2.5257214E-6 44.0 1 GACGCAT 25 4.4403307E-5 44.0 9 >>END_MODULE