##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546060_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1078066 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.9507414202841 31.0 28.0 33.0 23.0 33.0 2 28.784009513332208 31.0 28.0 33.0 16.0 33.0 3 28.209169939502775 31.0 27.0 33.0 16.0 34.0 4 32.3211807069326 35.0 32.0 35.0 26.0 37.0 5 33.75069522645181 35.0 33.0 35.0 30.0 37.0 6 33.556623620446246 35.0 33.0 37.0 28.0 37.0 7 34.56272250493012 35.0 35.0 37.0 32.0 37.0 8 34.927445072936166 35.0 35.0 37.0 32.0 37.0 9 36.78343069904811 39.0 37.0 39.0 32.0 39.0 10 36.30207334244842 38.0 35.0 39.0 32.0 39.0 11 36.367110176927945 38.0 35.0 39.0 32.0 39.0 12 35.12830476056197 37.0 34.0 39.0 29.0 39.0 13 35.43621633554903 37.0 35.0 39.0 30.0 39.0 14 36.140838316021465 38.0 35.0 40.0 30.0 41.0 15 36.725651305207656 38.0 35.0 40.0 31.0 41.0 16 36.29635476863198 38.0 34.0 40.0 31.0 41.0 17 35.89850343114429 37.0 34.0 40.0 30.0 41.0 18 35.59532347741233 37.0 34.0 39.0 29.0 40.0 19 35.026975157365136 37.0 33.0 39.0 27.0 41.0 20 35.45037502342157 36.0 34.0 39.0 30.0 41.0 21 35.59555815692175 36.0 34.0 39.0 30.0 40.0 22 35.98345463079255 37.0 34.0 40.0 31.0 41.0 23 36.37635265373363 37.0 35.0 40.0 32.0 41.0 24 35.94222153374654 36.0 35.0 40.0 31.0 41.0 25 35.60187038641419 36.0 34.0 40.0 30.0 41.0 26 35.777347583543126 37.0 34.0 40.0 31.0 41.0 27 36.120781102455695 37.0 35.0 40.0 31.0 41.0 28 36.0499700389401 37.0 35.0 40.0 31.0 41.0 29 36.1867093480362 37.0 35.0 40.0 31.0 41.0 30 35.82675457717802 37.0 35.0 40.0 31.0 41.0 31 35.16030280149824 36.0 34.0 40.0 29.0 41.0 32 35.16038721191467 37.0 34.0 40.0 29.0 41.0 33 34.929155543352636 37.0 34.0 40.0 27.0 41.0 34 34.60165147588366 37.0 34.0 40.0 24.0 41.0 35 34.41629083933637 37.0 34.0 40.0 23.0 41.0 36 34.02430927234511 36.0 34.0 40.0 21.0 41.0 37 33.94349696586294 37.0 33.0 40.0 21.0 41.0 38 33.82341711917452 36.0 33.0 40.0 20.0 41.0 39 33.602017872746195 36.0 33.0 40.0 18.0 41.0 40 33.386802848805175 36.0 33.0 40.0 18.0 40.0 41 33.1167609404248 35.0 33.0 39.0 18.0 40.0 42 33.301893390571635 36.0 33.0 40.0 18.0 40.0 43 33.09422706958572 35.0 33.0 39.0 18.0 40.0 44 32.84719859452019 35.0 33.0 39.0 16.0 40.0 45 32.81931532948818 35.0 32.0 39.0 17.0 40.0 46 32.63462348316337 35.0 32.0 39.0 17.0 40.0 47 32.63564846679146 35.0 32.0 39.0 18.0 40.0 48 32.66603621670659 35.0 32.0 39.0 18.0 40.0 49 32.6828542964902 35.0 32.0 39.0 18.0 40.0 50 32.896503553585774 35.0 33.0 39.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 7.0 12 7.0 13 17.0 14 42.0 15 106.0 16 220.0 17 525.0 18 1008.0 19 1732.0 20 2806.0 21 4101.0 22 5921.0 23 8684.0 24 12561.0 25 18841.0 26 26259.0 27 30140.0 28 29299.0 29 29088.0 30 32268.0 31 39526.0 32 53319.0 33 82099.0 34 129826.0 35 100582.0 36 108775.0 37 155671.0 38 171394.0 39 33240.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.01686909706827 22.400854864173436 27.723812827786055 20.858463210972243 2 37.772641007136855 19.881992382655607 29.47917845475138 12.86618815545616 3 29.352655588804392 19.052915127645246 38.64652071394516 12.947908569605202 4 25.895909897909775 25.11274819908985 34.67756148510388 14.313780417896494 5 20.45171631421453 30.119398997835013 35.55663567907716 13.872249008873297 6 18.93557537293635 37.926434930699976 32.97775831906395 10.16023137729972 7 78.67894915524653 4.445831702326203 14.542894405351806 2.3323247370754663 8 80.2641953275588 3.0279222236857484 14.290961777850336 2.416920670905121 9 76.6414115647836 4.729395046314418 15.367240966694062 3.2619524222079166 10 43.841471672420795 24.574654984017677 20.872562533277183 10.711310810284342 11 37.004042424118744 20.51340084929865 29.444393942485895 13.038162784096707 12 33.96934881537865 20.544011220092276 31.72829863848781 13.758341326041263 13 20.860689419757232 31.976984711511168 31.614298196956405 15.548027671775197 14 16.33823903174759 32.93054414108227 34.43258576005551 16.29863106711463 15 15.478273129845482 22.255130947455907 46.6802589080817 15.586337014616916 16 17.996857335265187 18.709615181259775 44.767110733480145 18.526416749994898 17 18.192949225743135 19.37237608829144 34.1650696710591 28.269605014906325 18 21.46343544829352 22.163392593774407 37.76930169395937 18.60387026397271 19 25.329803555626462 22.93635083566312 31.85695495452041 19.876890654190003 20 27.113553344600422 21.606933156226056 32.3295605278341 18.949952971339417 21 22.1963219320524 25.16200306845778 34.273690108026784 18.367984891463045 22 22.175543983392483 22.4093886645159 32.31852224260852 23.096545109483095 23 19.10012930562693 26.72489439422076 32.27047323633247 21.904503063819842 24 19.08612274202136 21.99141796513386 41.141544209723705 17.78091508312107 25 18.249532032361653 23.140141698189165 38.28828661696037 20.322039652488808 26 17.003689941061122 28.47831208849922 33.98001606580674 20.537981904632925 27 17.317863655842963 29.328445568267618 34.42989575777364 18.923795018115776 28 16.241769984397987 25.405680171714906 40.28241313611597 18.07013670777114 29 17.35877024226717 22.735899286314567 39.32866818914612 20.576662282272142 30 19.20819319039836 26.8256303417416 35.6690592227192 18.297117245140836 31 25.4005784432493 25.13936994581037 31.24836512792352 18.21168648301681 32 26.136340446688795 24.330699604662424 31.545842276817933 17.987117671830852 33 25.353457023966993 25.61197551912406 29.85735567210171 19.177211784807238 34 19.702040505868844 25.91529646607907 32.3474629568134 22.03520007123868 35 20.208503004454272 25.253741422139274 33.583194349882106 20.954561223524347 36 26.665528826621003 25.522648891626304 28.8749482870251 18.936873994727595 37 20.64363406322062 29.87405223798914 30.322447790766056 19.159865908024184 38 21.217068342754526 29.745303163257162 28.322013680052983 20.715614813935325 39 21.379303307960736 28.437683778173135 28.787847868312326 21.395165045553796 40 23.52592512888821 25.396682577875566 28.81753065211221 22.25986164112401 41 18.53634193082798 24.360567905861053 30.675580159285236 26.427510004025727 42 21.427723349034288 25.167846866518378 27.617047564805862 25.78738221964147 43 21.498869271454623 25.682008337151903 28.397148226546427 24.42197416484705 44 20.025675607986894 27.682442447864975 29.796691482710706 22.495190461437424 45 19.21236733187022 31.62431613648886 26.729810605287618 22.433505926353302 46 20.947511562371876 29.62490237146891 28.812057888849107 20.615528177310107 47 20.581671252038372 26.48437108674237 30.323282619060425 22.610675042158828 48 21.05641027543768 24.82723692241477 32.61804008288917 21.498312719258376 49 21.117167223528057 24.83836796633972 32.26240322948688 21.78206158064534 50 19.288522224056784 29.049056365751262 30.533195555745195 21.12922585444676 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 349.0 1 1019.5 2 1690.0 3 14889.5 4 28089.0 5 19643.0 6 11197.0 7 11233.5 8 11270.0 9 11851.0 10 12432.0 11 12026.5 12 11621.0 13 11079.5 14 10538.0 15 9874.0 16 9210.0 17 8621.0 18 8032.0 19 7340.5 20 6649.0 21 6608.5 22 6568.0 23 7111.5 24 7655.0 25 7266.0 26 6877.0 27 8296.0 28 9715.0 29 11424.0 30 13133.0 31 16300.5 32 19468.0 33 22501.5 34 25535.0 35 27360.5 36 29186.0 37 32243.0 38 35300.0 39 41869.0 40 48438.0 41 60729.0 42 73020.0 43 82749.0 44 92478.0 45 90635.0 46 88792.0 47 85855.0 48 82918.0 49 82675.5 50 82433.0 51 75726.0 52 69019.0 53 62593.0 54 56167.0 55 51105.5 56 46044.0 57 43854.0 58 41664.0 59 39110.5 60 36557.0 61 32320.0 62 28083.0 63 25084.5 64 22086.0 65 18237.5 66 14389.0 67 12717.0 68 11045.0 69 9500.5 70 7956.0 71 6621.5 72 5287.0 73 4268.5 74 3250.0 75 2546.5 76 1843.0 77 1365.0 78 887.0 79 725.5 80 564.0 81 424.0 82 284.0 83 221.0 84 158.0 85 133.5 86 109.0 87 73.0 88 37.0 89 32.0 90 27.0 91 18.5 92 10.0 93 6.5 94 3.0 95 2.0 96 1.0 97 2.0 98 3.0 99 1.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1078066.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.47906178280017 #Duplication Level Percentage of deduplicated Percentage of total 1 75.89594070869515 20.855492437979724 2 7.485167628963124 4.113707674617871 3 3.364907697205356 2.773935195147775 4 2.084486085423656 2.291188877069757 5 1.5023278735210346 2.0641280227253653 6 1.125160081494965 1.855100603696437 7 0.854639429074492 1.643928277148852 8 0.6831214257308346 1.501722869024971 9 0.5452199187812107 1.348391865006196 >10 5.153285248537785 31.58792495162749 >50 1.10782136912345 21.10160325405576 >100 0.19724121663845193 7.136244434793948 >500 3.406584052476187E-4 0.0679606666272101 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 3.406584052476187E-4 1.6586708704786994 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 17719 1.6435913942189069 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.032465544781117295 0.0 2 0.0 0.0 0.0 0.12244148317449952 0.0 3 0.0 0.0 0.0 0.164646691389952 0.0 4 0.0 0.0 0.0 0.23792606389590248 0.0 5 0.0 0.0 0.0 0.4084165533464556 0.0 6 0.0 0.0 0.0 0.5813187689807489 0.0 7 0.0 0.0 0.0 0.6911450690402999 0.0 8 0.0 0.0 0.0 0.9591249515335796 0.0 9 9.275869937462085E-5 0.0 0.0 1.0767429823405987 0.0 10 9.275869937462085E-5 0.0 0.0 1.2828528123510063 0.0 11 9.275869937462085E-5 0.0 0.0 1.4918381620420271 0.0 12 9.275869937462085E-5 0.0 0.0 1.6720683149269153 0.0 13 1.855173987492417E-4 0.0 0.0 1.745347687432866 0.0 14 1.855173987492417E-4 0.0 0.0 1.7770711626189861 0.0 15 1.855173987492417E-4 0.0 0.0 1.8219663731163027 0.0 16 2.7827609812386254E-4 0.0 0.0 1.9225168032383917 0.0 17 2.7827609812386254E-4 0.0 0.0 2.045700356007888 0.0 18 2.7827609812386254E-4 0.0 0.0 2.222405678316541 0.0 19 2.7827609812386254E-4 0.0 0.0 2.3056102316555758 0.0 20 3.710347974984834E-4 0.0 0.0 2.395400652650209 0.0 21 4.6379349687310423E-4 0.0 0.0 2.5057835049060078 0.0 22 4.6379349687310423E-4 0.0 0.0 2.626462572792389 0.0 23 4.6379349687310423E-4 0.0 0.0 2.75233612784375 0.0 24 4.6379349687310423E-4 0.0 0.0 2.851587936174594 0.0 25 5.565521962477251E-4 0.0 0.0 2.9333083503236352 0.0 26 5.565521962477251E-4 0.0 0.0 3.0173477319570416 0.0 27 5.565521962477251E-4 0.0 0.0 3.1062105659579284 0.0 28 5.565521962477251E-4 0.0 0.0 3.1923833976769513 0.0 29 5.565521962477251E-4 0.0 0.0 3.290243825517176 0.0 30 5.565521962477251E-4 0.0 0.0 3.413334619587298 0.0 31 5.565521962477251E-4 0.0 0.0 3.5163895345925016 0.0 32 5.565521962477251E-4 0.0 0.0 3.6118382362489867 0.0 33 5.565521962477251E-4 0.0 0.0 3.7183252231310515 0.0 34 5.565521962477251E-4 0.0 0.0 3.8244411752156178 0.0 35 6.49310895622346E-4 0.0 0.0 3.9601471524006877 0.0 36 6.49310895622346E-4 0.0 0.0 4.060975858620901 0.0 37 6.49310895622346E-4 0.0 0.0 4.176089404544805 0.0 38 7.420695949969668E-4 0.0 0.0 4.295006057143069 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTGATCG 40 8.310963E-9 44.000004 1 TAACGCG 20 7.856263E-4 44.000004 1 TCGATAG 20 7.856263E-4 44.000004 1 ACCTACG 20 7.856263E-4 44.000004 33 CGTAATC 20 7.856263E-4 44.000004 40 CGATAAG 35 1.4459692E-7 44.0 10 CGTTTTT 11300 0.0 43.240707 1 CGGTCTA 145 0.0 42.482758 31 TACGGGA 245 0.0 42.204082 4 AGTACGG 75 0.0 41.066666 2 TGATTCG 65 0.0 40.615387 15 TTATACG 60 3.6379788E-12 40.333332 1 TCACGAC 155 0.0 39.741932 25 TATAGCG 45 2.35068E-8 39.111115 1 CAATTAT 1125 0.0 39.11111 44 GTTTTTT 12955 0.0 38.990353 2 ACGGGAT 420 0.0 38.7619 5 TATACGG 125 0.0 38.72 2 GGCGATA 330 0.0 38.666668 8 CTATACG 40 4.124213E-7 38.500004 1 >>END_MODULE