##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546059_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1063609 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.839908274563303 31.0 28.0 33.0 16.0 33.0 2 28.6786384846311 31.0 28.0 33.0 16.0 33.0 3 28.09016095200398 31.0 26.0 33.0 16.0 34.0 4 32.20613496124986 35.0 32.0 35.0 26.0 37.0 5 33.68725913376062 35.0 33.0 35.0 28.0 37.0 6 33.49065587071941 35.0 33.0 37.0 28.0 37.0 7 34.482256167444994 35.0 35.0 37.0 32.0 37.0 8 34.89367897413429 35.0 35.0 37.0 32.0 37.0 9 36.760650765459864 39.0 37.0 39.0 32.0 39.0 10 36.38142870171276 39.0 35.0 39.0 32.0 39.0 11 36.37995353555677 38.0 35.0 39.0 32.0 39.0 12 35.30103731728483 37.0 34.0 39.0 30.0 39.0 13 35.51232078705615 37.0 35.0 39.0 30.0 39.0 14 36.20909375531798 38.0 35.0 40.0 30.0 41.0 15 36.69927106671719 38.0 35.0 40.0 31.0 41.0 16 36.25074816027318 38.0 34.0 40.0 31.0 41.0 17 35.84972297150551 37.0 34.0 40.0 30.0 41.0 18 35.526575085393226 37.0 34.0 39.0 29.0 40.0 19 34.927857887626 37.0 33.0 39.0 27.0 41.0 20 35.532032918111824 36.0 34.0 39.0 30.0 41.0 21 35.66463333800297 36.0 34.0 39.0 30.0 41.0 22 36.00170739435262 37.0 34.0 40.0 31.0 41.0 23 36.36884607031343 37.0 35.0 40.0 32.0 41.0 24 35.95679615347369 36.0 35.0 40.0 31.0 41.0 25 35.62526924837981 36.0 34.0 40.0 30.0 41.0 26 35.78305091438677 37.0 34.0 40.0 31.0 41.0 27 36.12636974677724 37.0 35.0 40.0 31.0 41.0 28 36.05991957570874 37.0 35.0 40.0 31.0 41.0 29 36.181607150748064 37.0 35.0 40.0 31.0 41.0 30 35.82751462238473 37.0 35.0 40.0 31.0 41.0 31 35.129462048553556 36.0 34.0 40.0 29.0 41.0 32 35.151435348892306 37.0 34.0 40.0 29.0 41.0 33 34.93005512364036 37.0 34.0 40.0 27.0 41.0 34 34.60617482552329 37.0 34.0 40.0 24.0 41.0 35 34.390586202260415 37.0 34.0 40.0 23.0 41.0 36 34.04815961504651 37.0 34.0 40.0 21.0 41.0 37 33.98451874702076 37.0 33.0 40.0 21.0 41.0 38 33.83568961902353 36.0 33.0 40.0 20.0 41.0 39 33.58373612859613 36.0 33.0 40.0 18.0 41.0 40 33.436135835631326 36.0 33.0 40.0 18.0 41.0 41 33.146048030808316 36.0 33.0 40.0 18.0 40.0 42 33.34803861193352 36.0 33.0 40.0 18.0 41.0 43 33.14843330584829 35.0 33.0 40.0 18.0 40.0 44 32.9127696362103 35.0 33.0 39.0 16.0 40.0 45 32.90745189256578 35.0 33.0 39.0 17.0 40.0 46 32.72080717632137 35.0 32.0 39.0 17.0 40.0 47 32.734238803921365 35.0 32.0 39.0 18.0 40.0 48 32.75128548178889 35.0 32.0 39.0 18.0 40.0 49 32.77489660204079 35.0 32.0 39.0 18.0 40.0 50 32.91543038842281 35.0 33.0 39.0 17.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 7.0 11 8.0 12 12.0 13 21.0 14 45.0 15 96.0 16 201.0 17 461.0 18 994.0 19 1788.0 20 2734.0 21 4117.0 22 6049.0 23 8618.0 24 12584.0 25 18486.0 26 26275.0 27 29504.0 28 28688.0 29 28735.0 30 31710.0 31 39276.0 32 52851.0 33 80730.0 34 127773.0 35 98346.0 36 105463.0 37 150361.0 38 170164.0 39 37511.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.977283945510052 22.43606438080159 27.659506453969456 20.927145219718902 2 37.871153779255344 19.778978929286982 29.4562193437626 12.893647947695063 3 29.319514972137316 19.0406436951925 38.75136445817965 12.888476874490532 4 25.845682012844946 25.18199827192135 34.56411143568736 14.408208279546336 5 20.363310201399198 30.14021129945309 35.6455238720244 13.850954627123313 6 18.921897050513863 37.8803676915107 33.02886681101796 10.16886844695748 7 78.51578916688369 4.480969980509755 14.61232464185617 2.390916210750379 8 80.12239460177565 3.074626107902434 14.369566259781555 2.4334130305403585 9 76.52417382703607 4.8117306265742394 15.408669915354235 3.255425631035465 10 43.77745957395998 24.861485752753126 20.947923532049842 10.413131141237052 11 37.06145773493831 20.578426846707764 29.401594006820176 12.958521411533749 12 33.935590992554594 20.931846195359384 31.798527466390375 13.334035345695646 13 20.818270623885283 32.02257596541586 31.59441110408054 15.564742306618315 14 16.354976311783748 32.98025872289535 34.31759227310036 16.347172692220543 15 15.458688296168987 22.359250438836074 46.595318392379156 15.586742872615783 16 17.958385083240174 18.754072220148572 44.79728922940667 18.490253467204585 17 18.15281743573061 19.348087502080183 34.323233443868936 28.175861618320262 18 21.44660302799243 22.15287760821881 37.84727282300169 18.553246540787075 19 25.193750711022567 23.111782619364824 31.911350881762 19.783115787850612 20 27.24826510493988 21.64959115614855 32.29965146966601 18.802492269245562 21 22.16716857416588 25.214435003840695 34.23993215551956 18.378464266473866 22 22.047011636795098 22.372507190142244 32.45609993898134 23.12438123408132 23 19.123568905490647 26.601880954373268 32.28855716715447 21.985992972981613 24 19.084174729623385 22.04616546117981 41.15102448362133 17.71863532557547 25 18.306163261123213 23.126355643850324 38.28869443564317 20.27878665938329 26 16.947017183946357 28.526742440126025 34.06966281782121 20.45657755810641 27 17.220143868658504 29.353738074800045 34.51738373782094 18.90873431872051 28 16.20332283762172 25.487749727578464 40.32243051722955 17.98649691757027 29 17.212716327146534 22.763252285379306 39.50305046309311 20.520980924381046 30 19.065558866087066 26.842100809602027 35.760979833754696 18.331360490556207 31 25.471766410400814 24.958607909485533 31.219367267482696 18.350258412630957 32 26.19411832731765 24.390730052115018 31.542230274471162 17.872921346096167 33 25.447039278531868 25.495647366654477 29.88297391240578 19.174339442407877 34 19.633342703944777 25.98736941864915 32.31666900148456 22.06261887592151 35 20.18448508803517 25.275077589602944 33.63585678571731 20.904580536644577 36 26.648232574188448 25.486433454399126 28.963651116152644 18.90168285525978 37 20.69754956943764 29.839066799923657 30.368302637529393 19.09508099310931 38 21.221520314326035 29.775791667802736 28.32789117053353 20.674796847337696 39 21.394328178870243 28.546956635380106 28.798552851658833 21.26016233409082 40 23.528477100137362 25.490946391013992 28.871417974086345 22.109158534762305 41 18.656009868288066 24.287402607537167 30.71946551787358 26.33712200630119 42 21.417362959508615 25.199297862278335 27.543110297111063 25.840228881101986 43 21.398747095972297 25.748559856112536 28.412038634498206 24.440654413416958 44 19.921606530219282 27.600932297489024 30.074021562435068 22.40343960985663 45 19.253879950244873 31.64217301658786 26.82686964852686 22.27707738464041 46 20.933162468538722 29.592923715387894 28.965625525921652 20.50828829015174 47 20.512049070664126 26.5846753835291 30.39396996452644 22.50930558128034 48 21.0892348598028 24.839579206268468 32.586599022761185 21.484586911167543 49 21.019472381298016 24.877939167494823 32.447544163315655 21.65504428789151 50 19.216930281710667 29.042533487399975 30.620933068449023 21.119603162440335 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 422.0 1 1052.5 2 1683.0 3 15110.0 4 28537.0 5 19889.5 6 11242.0 7 11231.0 8 11220.0 9 11556.0 10 11892.0 11 11733.0 12 11574.0 13 10975.0 14 10376.0 15 9716.0 16 9056.0 17 8371.0 18 7686.0 19 7100.5 20 6515.0 21 6501.0 22 6487.0 23 6940.5 24 7394.0 25 7204.5 26 7015.0 27 8201.5 28 9388.0 29 11260.5 30 13133.0 31 16133.5 32 19134.0 33 22221.5 34 25309.0 35 27020.5 36 28732.0 37 31903.5 38 35075.0 39 41800.5 40 48526.0 41 60361.5 42 72197.0 43 81754.5 44 91312.0 45 89644.5 46 87977.0 47 84908.0 48 81839.0 49 81665.0 50 81491.0 51 74895.5 52 68300.0 53 61535.0 54 54770.0 55 49899.5 56 45029.0 57 42800.0 58 40571.0 59 38306.0 60 36041.0 61 31823.0 62 27605.0 63 24696.5 64 21788.0 65 17891.5 66 13995.0 67 12191.0 68 10387.0 69 9039.5 70 7692.0 71 6495.0 72 5298.0 73 4243.0 74 3188.0 75 2485.0 76 1782.0 77 1301.5 78 821.0 79 660.0 80 499.0 81 398.0 82 297.0 83 212.0 84 127.0 85 127.5 86 128.0 87 81.0 88 34.0 89 30.0 90 26.0 91 16.0 92 6.0 93 7.0 94 8.0 95 5.5 96 3.0 97 2.5 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1063609.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.998091623709097 #Duplication Level Percentage of deduplicated Percentage of total 1 75.48873940458148 20.3805190300319 2 7.387038554849223 3.988718874633819 3 3.440552297146164 2.7866503846354482 4 2.1739154571891386 2.3476627478155923 5 1.5284015997191096 2.0631963213520037 6 1.159630230379533 1.878468192564571 7 0.907681331504641 1.7153964627164797 8 0.7313147232942031 1.5795281524211489 9 0.5655663694190133 1.3742291394776724 >10 5.272432734008662 31.593143676061946 >50 1.1419816562690226 21.37398175972632 >100 0.20204288378320273 7.1495463218698 >500 3.5137892831855745E-4 0.07076974134033304 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 3.5137892831855745E-4 1.698189195352951 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 17901 1.6830432988062343 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.033188888021820045 0.0 2 0.0 0.0 0.0 0.12485791301126636 0.0 3 0.0 0.0 0.0 0.17064541574958467 0.0 4 0.0 0.0 0.0 0.2385275039981798 0.0 5 0.0 0.0 0.0 0.4031556709279444 0.0 6 0.0 0.0 0.0 0.560826393909792 0.0 7 0.0 0.0 0.0 0.6672564824103594 0.0 8 0.0 0.0 0.0 0.9224254401758541 0.0 9 0.0 0.0 0.0 1.0412661043673004 0.0 10 0.0 0.0 0.0 1.2574169643167743 0.0 11 9.401951280968852E-5 0.0 0.0 1.4633196973699922 0.0 12 9.401951280968852E-5 0.0 0.0 1.6397003034009678 0.0 13 9.401951280968852E-5 0.0 0.0 1.7149159136487186 0.0 14 9.401951280968852E-5 0.0 0.0 1.7448141187221997 0.0 15 9.401951280968852E-5 0.0 0.0 1.7885331921787049 0.0 16 1.8803902561937704E-4 0.0 0.0 1.8809543732706286 0.0 17 2.8205853842906556E-4 0.0 0.0 2.0008292521029816 0.0 18 2.8205853842906556E-4 0.0 0.0 2.1693122190579435 0.0 19 2.8205853842906556E-4 0.0 0.0 2.24575008297222 0.0 20 2.8205853842906556E-4 0.0 0.0 2.3318719567058945 0.0 21 2.8205853842906556E-4 0.0 0.0 2.4397123378986074 0.0 22 3.760780512387541E-4 0.0 0.0 2.550279284962801 0.0 23 3.760780512387541E-4 0.0 0.0 2.6744790613843996 0.0 24 3.760780512387541E-4 0.0 0.0 2.77094308152714 0.0 25 3.760780512387541E-4 0.0 0.0 2.851047706440995 0.0 26 3.760780512387541E-4 0.0 0.0 2.9335968386879014 0.0 27 3.760780512387541E-4 0.0 0.0 3.024795766113299 0.0 28 3.760780512387541E-4 0.0 0.0 3.1103535227701156 0.0 29 3.760780512387541E-4 0.0 0.0 3.2009883331186555 0.0 30 4.700975640484426E-4 0.0 0.0 3.320957231463818 0.0 31 5.641170768581311E-4 0.0 0.0 3.4198657589396104 0.0 32 5.641170768581311E-4 0.0 0.0 3.512663018082773 0.0 33 5.641170768581311E-4 0.0 0.0 3.607998804071797 0.0 34 5.641170768581311E-4 0.0 0.0 3.715181048674842 0.0 35 5.641170768581311E-4 0.0 0.0 3.836184161660911 0.0 36 5.641170768581311E-4 0.0 0.0 3.9409218989309043 0.0 37 5.641170768581311E-4 0.0 0.0 4.0481981630467585 0.0 38 5.641170768581311E-4 0.0 0.0 4.168261080904731 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTGATCG 35 1.445951E-7 44.0 1 ATATCGT 20 7.856218E-4 44.0 12 GCGATCG 20 7.856218E-4 44.0 9 TATAGCG 70 0.0 44.0 1 GACGCGT 20 7.856218E-4 44.0 16 CGTCCAG 20 7.856218E-4 44.0 32 ATACCGG 40 8.310963E-9 44.0 2 CGTTTTT 11160 0.0 43.09319 1 TACGGGA 235 0.0 42.12766 4 CAATTAT 1095 0.0 40.78539 44 GCTACGA 65 0.0 40.615387 10 CGACCCG 375 0.0 40.480003 32 CGAGGGA 460 0.0 40.173916 4 TGGGCGA 370 0.0 39.837837 6 GATGCCA 1245 0.0 39.40562 9 GGATGCC 1280 0.0 39.359375 8 AGGGCGC 305 0.0 38.95082 6 GTTTTTT 12830 0.0 38.752922 2 TACCGGG 165 0.0 38.666664 3 CGGGATC 190 0.0 38.210526 6 >>END_MODULE