##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546057_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 981400 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.981059710617487 31.0 28.0 33.0 23.0 33.0 2 28.783039535357652 31.0 28.0 33.0 16.0 33.0 3 28.15349500713267 31.0 27.0 33.0 16.0 34.0 4 32.31517322192786 35.0 32.0 35.0 26.0 37.0 5 33.66771652740982 35.0 33.0 35.0 28.0 37.0 6 33.44131037293662 35.0 33.0 37.0 28.0 37.0 7 34.47358263704911 35.0 35.0 37.0 32.0 37.0 8 34.84295088648869 35.0 35.0 37.0 32.0 37.0 9 36.595318932137765 39.0 37.0 39.0 32.0 39.0 10 36.28783574485429 38.0 35.0 39.0 31.0 39.0 11 36.2876727124516 38.0 35.0 39.0 31.0 39.0 12 35.05720501324638 37.0 34.0 39.0 29.0 39.0 13 35.35789891991033 37.0 35.0 39.0 30.0 39.0 14 35.97539229671897 38.0 34.0 40.0 29.0 41.0 15 36.53622478092521 38.0 35.0 40.0 31.0 41.0 16 36.10508355410638 38.0 34.0 40.0 30.0 41.0 17 35.69651620134502 37.0 34.0 40.0 29.0 41.0 18 35.356022009374364 37.0 33.0 39.0 29.0 40.0 19 34.83905135520685 37.0 33.0 39.0 27.0 40.0 20 35.295872223354394 36.0 34.0 39.0 29.0 40.0 21 35.53996535561443 36.0 34.0 39.0 30.0 40.0 22 35.89503362543306 37.0 34.0 40.0 31.0 41.0 23 36.23622987568779 37.0 35.0 40.0 31.0 41.0 24 35.90396474424292 37.0 35.0 40.0 31.0 41.0 25 35.55498573466476 36.0 34.0 40.0 30.0 41.0 26 35.66110963929081 37.0 34.0 40.0 30.0 41.0 27 35.94076930915019 37.0 35.0 40.0 31.0 41.0 28 35.85333706949256 37.0 35.0 40.0 31.0 41.0 29 35.9763694721826 37.0 35.0 40.0 31.0 41.0 30 35.59019258202568 37.0 35.0 40.0 30.0 41.0 31 34.914655594049314 36.0 34.0 40.0 28.0 41.0 32 34.89597513755859 36.0 34.0 40.0 27.0 41.0 33 34.63831159567964 36.0 34.0 40.0 25.0 41.0 34 34.38249235785612 37.0 34.0 40.0 23.0 41.0 35 34.16459445689831 36.0 34.0 40.0 22.0 41.0 36 33.80783472590177 36.0 33.0 40.0 21.0 41.0 37 33.71616466272672 36.0 33.0 40.0 20.0 41.0 38 33.53946708783371 36.0 33.0 40.0 18.0 41.0 39 33.33288974933768 36.0 33.0 40.0 18.0 41.0 40 33.127278377827594 35.0 33.0 40.0 18.0 40.0 41 32.83003464438557 35.0 32.0 39.0 17.0 40.0 42 32.98487976360302 35.0 33.0 39.0 18.0 40.0 43 32.78434685143672 35.0 32.0 39.0 17.0 40.0 44 32.64843386998166 35.0 32.0 39.0 16.0 40.0 45 32.582245771347054 35.0 32.0 39.0 17.0 40.0 46 32.43302221316487 35.0 32.0 39.0 17.0 40.0 47 32.36778275932342 35.0 32.0 38.0 17.0 40.0 48 32.36420521703688 35.0 32.0 38.0 17.0 40.0 49 32.339932749133894 35.0 32.0 38.0 17.0 40.0 50 32.487393519461996 35.0 32.0 39.0 17.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 4.0 11 6.0 12 5.0 13 22.0 14 53.0 15 149.0 16 269.0 17 625.0 18 1111.0 19 1832.0 20 2890.0 21 4183.0 22 6124.0 23 8611.0 24 12113.0 25 17858.0 26 24452.0 27 28379.0 28 27597.0 29 27957.0 30 31416.0 31 38412.0 32 51446.0 33 76805.0 34 118300.0 35 93359.0 36 100314.0 37 135312.0 38 142410.0 39 29386.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.66191155492154 22.969125738740576 27.76064805380069 20.608314652537192 2 37.93152639087018 20.06348074179743 29.21662930507438 12.788363562257999 3 29.747911147340535 19.472488282046058 37.74668840432036 13.03291216629305 4 26.296209496637456 25.0179335642959 34.08559201141227 14.600264927654372 5 21.2709394742205 29.219686162624818 35.421133075198696 14.088241287955983 6 19.618402282453637 37.299470144691256 32.865600163032404 10.216527409822703 7 78.80965966985939 4.3385979213368655 14.455981251273691 2.395761157530059 8 80.0951701650703 3.219686162624822 14.225901772977378 2.4592418993274916 9 76.67964132871407 4.464132871408193 15.36937028734461 3.4868555125331158 10 46.41552883635622 21.85500305685755 20.414611779091093 11.314856327695129 11 38.37303851640513 21.273486855512534 26.568677399633177 13.784797228449156 12 33.785204809455884 20.82290605257795 31.153658039535358 14.238231098430813 13 22.207051151416344 29.885673527613616 32.38862848991237 15.518646831057673 14 17.41899327491339 31.352353780313834 35.38098634603627 15.847666598736499 15 16.76849398818015 21.305787650295496 45.48441002649277 16.441308335031586 16 19.88710006113715 17.78031383737518 43.60138577542286 18.731200326064805 17 20.43774200122274 18.021703688608113 33.268493988180154 28.272060321988995 18 22.73863867943754 21.803953535765235 36.63816996127981 18.819237823517422 19 27.233136335846748 22.587731811697576 30.726309353984107 19.452822498471573 20 27.514367230487057 22.24852251885062 30.32830650091706 19.908803749745264 21 23.650091705726513 23.9249031995109 33.17648257591196 19.24852251885062 22 22.87415936417363 21.232932545343385 32.04473201548807 23.848176074994907 23 20.736498879152233 25.32677807214184 31.461279804361116 22.475443244344813 24 21.131037293662118 22.164051355206848 38.10006113715101 18.60485021398003 25 20.57122478092521 22.18208681475443 36.38669248013043 20.859995924189935 26 18.700122274302018 26.228754840024454 32.85897697167312 22.21214591400041 27 19.077644181781128 25.792745058080293 34.998573466476465 20.131037293662114 28 17.728652944772776 24.139698390055024 38.965763195435095 19.16588546973711 29 18.628388017118404 23.37578968820053 37.723252496433666 20.272569798247403 30 21.401161605869166 24.43927042999796 35.36784185856939 18.79172610556348 31 27.58141430609334 22.396372529040146 30.68096596698594 19.34124719788058 32 27.401263501120848 23.244141023028327 30.75922152027715 18.59537395557367 33 26.050438149582227 23.487364988791523 29.435500305685757 21.026696555940493 34 20.80782555532912 25.010902791929894 31.65610352557571 22.525168127165273 35 21.23334012635011 24.481964540452413 32.97218259629101 21.31251273690646 36 28.03596902384349 23.94640309761565 28.232626859588343 19.785001018952517 37 21.8939270429998 28.793152639087015 28.566741389851234 20.746178928061955 38 22.75565518646831 28.9309150193601 26.839311188098634 21.474118606072956 39 21.805583859792133 26.94487466884043 27.589464030976156 23.660077440391277 40 24.28928061952313 23.850010189525168 28.406969635215003 23.453739555736703 41 20.085592011412267 22.95343386998166 29.666394945995517 27.294579172610554 42 22.962706337884654 24.22121459140004 27.709394742205014 25.106684328510294 43 22.017933564295905 24.022009374363154 28.591807621764826 25.368249439576118 44 21.060321988995312 25.7132667617689 30.272162217240677 22.954249031995108 45 20.35785612390463 29.792948848583656 26.816792337477075 23.032402690034644 46 23.045241491746484 26.565416751579374 28.77807214183819 21.611269614835948 47 21.74903199510903 25.733543916853474 29.929488485836558 22.587935602200936 48 22.209496637456695 24.18830242510699 31.56195231302221 22.0402486244141 49 22.219074791114735 23.66191155492154 31.771245159975546 22.34776849398818 50 20.373751783166906 27.433666191155492 30.411554921540656 21.781027104136946 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 425.0 1 1109.0 2 1793.0 3 13667.5 4 25542.0 5 17627.5 6 9713.0 7 9680.5 8 9648.0 9 10045.5 10 10443.0 11 10379.0 12 10315.0 13 9915.0 14 9515.0 15 8919.0 16 8323.0 17 7630.0 18 6937.0 19 6394.5 20 5852.0 21 5644.5 22 5437.0 23 5459.0 24 5481.0 25 5514.5 26 5548.0 27 6158.5 28 6769.0 29 7585.5 30 8402.0 31 10516.5 32 12631.0 33 14874.5 34 17118.0 35 19204.5 36 21291.0 37 23571.0 38 25851.0 39 31424.5 40 36998.0 41 45959.0 42 54920.0 43 63866.5 44 72813.0 45 75030.0 46 77247.0 47 75357.0 48 73467.0 49 75332.5 50 77198.0 51 71509.0 52 65820.0 53 60092.5 54 54365.0 55 52295.5 56 50226.0 57 48475.5 58 46725.0 59 43848.5 60 40972.0 61 38403.5 62 35835.0 63 31701.5 64 27568.0 65 23686.0 66 19804.0 67 16595.5 68 13387.0 69 12174.5 70 10962.0 71 8759.5 72 6557.0 73 5395.5 74 4234.0 75 3374.0 76 2514.0 77 1936.5 78 1359.0 79 1005.5 80 652.0 81 511.0 82 370.0 83 267.0 84 164.0 85 134.0 86 104.0 87 74.5 88 45.0 89 39.0 90 33.0 91 24.0 92 15.0 93 11.5 94 8.0 95 5.5 96 3.0 97 2.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 981400.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.130628157173334 #Duplication Level Percentage of deduplicated Percentage of total 1 75.52636185781405 22.001303633441 2 7.258526284405033 4.22890860320144 3 3.436211190141429 3.00296971348584 4 2.1398747415057118 2.493435815909212 5 1.4934609139566195 2.1752727275871258 6 1.08211676436644 1.8913644651241388 7 0.8644236687358416 1.7626843124942368 8 0.6989595217633221 1.6288903940322428 9 0.5957847988155524 1.5620026892392962 >10 6.024789922982487 38.87945021003536 >50 0.8102419072255467 15.443230235004377 >100 0.06643630937280819 2.8248670903157467 >500 0.0024606040508443855 0.4472765958784171 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 3.515148644063408E-4 1.6583435142515943 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16195 1.6501936009781943 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.026798451192174444 0.0 2 0.0 0.0 0.0 0.08640717342571837 0.0 3 0.0 0.0 0.0 0.12431220705115141 0.0 4 0.0 0.0 0.0 0.1933971876910536 0.0 5 0.0 0.0 0.0 0.3633584674954147 0.0 6 0.0 0.0 0.0 0.5400448339107398 0.0 7 1.0189525168127165E-4 0.0 0.0 0.6584471163643775 0.0 8 1.0189525168127165E-4 0.0 0.0 0.9568983085388221 0.0 9 1.0189525168127165E-4 0.0 0.0 1.0965966985938456 0.0 10 2.037905033625433E-4 0.0 0.0 1.341756674138985 0.0 11 2.037905033625433E-4 0.0 0.0 1.548705930303648 0.0 12 2.037905033625433E-4 0.0 0.0 1.730690849806399 0.0 13 3.0568575504381494E-4 0.0 0.0 1.8080293458324843 0.0 14 3.0568575504381494E-4 0.0 0.0 1.837578968820053 0.0 15 3.0568575504381494E-4 0.0 0.0 1.874770735683717 0.0 16 3.0568575504381494E-4 0.0 0.0 1.9495618504177705 0.0 17 3.0568575504381494E-4 0.0 0.0 2.0509476258406356 0.0 18 3.0568575504381494E-4 0.0 0.0 2.200937436315468 0.0 19 3.0568575504381494E-4 0.0 0.0 2.276034236804565 0.0 20 3.0568575504381494E-4 0.0 0.0 2.364988791522315 0.0 21 3.0568575504381494E-4 0.0 0.0 2.4687181577338495 0.0 22 3.0568575504381494E-4 0.0 0.0 2.5718361524352966 0.0 23 4.075810067250866E-4 0.0 0.0 2.683309557774608 0.0 24 4.075810067250866E-4 0.0 0.0 2.7787854085999593 0.0 25 4.075810067250866E-4 0.0 0.0 2.851131037293662 0.0 26 4.075810067250866E-4 0.0 0.0 2.9195027511717955 0.0 27 4.075810067250866E-4 0.0 0.0 3.0009170572651316 0.0 28 4.075810067250866E-4 0.0 0.0 3.087018544935806 0.0 29 5.094762584063583E-4 0.0 0.0 3.1808640717342573 0.0 30 5.094762584063583E-4 0.0 0.0 3.3242306908498063 0.0 31 5.094762584063583E-4 0.0 0.0 3.4274505808029345 0.0 32 5.094762584063583E-4 0.0 0.0 3.5287344609741185 0.0 33 6.113715100876299E-4 0.0 0.0 3.634196046464235 0.0 34 6.113715100876299E-4 0.0 0.0 3.7446504992867333 0.0 35 6.113715100876299E-4 0.0 0.0 3.884960260851844 0.0 36 6.113715100876299E-4 0.0 0.0 3.9948033421642553 0.0 37 6.113715100876299E-4 0.0 0.0 4.100774403912777 0.0 38 6.113715100876299E-4 0.0 0.0 4.249541471367435 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCGACA 20 7.855918E-4 44.000004 28 CGTTAGA 20 7.855918E-4 44.000004 25 ATCCGAT 20 7.855918E-4 44.000004 26 GTACTCA 20 7.855918E-4 44.000004 9 TACGTAG 65 0.0 44.000004 1 CTCGTAG 30 2.5273366E-6 44.0 1 TAGCGAT 35 1.4457873E-7 44.0 28 CGTTTTT 10300 0.0 43.038837 1 AACGGGA 110 0.0 42.0 4 CGGTCTA 170 0.0 41.411762 31 GCGATAT 70 0.0 40.857143 9 TCACGAC 180 0.0 40.333332 25 CTAACGG 60 3.6379788E-12 40.333332 2 TATGGGC 220 0.0 40.0 4 CCCTACA 265 0.0 39.01887 27 TCGTTGA 85 0.0 38.82353 24 TACGGGA 170 0.0 38.82353 4 TGTTACG 40 4.1237217E-7 38.500004 1 TGCGTAG 40 4.1237217E-7 38.500004 1 GTTTTTT 12010 0.0 38.39467 2 >>END_MODULE