##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546055_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 972141 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.838888597435968 31.0 28.0 31.0 16.0 33.0 2 28.633917302119755 31.0 28.0 33.0 16.0 33.0 3 28.029634590044036 31.0 26.0 33.0 16.0 34.0 4 32.20445593797608 35.0 32.0 35.0 26.0 37.0 5 33.65569089257628 35.0 33.0 35.0 28.0 37.0 6 33.4836654353638 35.0 33.0 37.0 28.0 37.0 7 34.474962994051275 35.0 35.0 37.0 32.0 37.0 8 34.85795270439165 35.0 35.0 37.0 32.0 37.0 9 36.7150454512257 39.0 37.0 39.0 32.0 39.0 10 36.369310624693334 38.0 35.0 39.0 32.0 39.0 11 36.35257334069852 38.0 35.0 39.0 32.0 39.0 12 35.194402869542586 37.0 34.0 39.0 29.0 39.0 13 35.442056244927436 37.0 35.0 39.0 30.0 39.0 14 36.0650666930003 38.0 34.0 40.0 29.0 41.0 15 36.5461255105998 38.0 35.0 40.0 31.0 41.0 16 36.10039695887736 38.0 34.0 40.0 30.0 41.0 17 35.695474216188806 37.0 34.0 40.0 30.0 41.0 18 35.37802849586634 37.0 33.0 39.0 29.0 40.0 19 34.826237140497106 37.0 33.0 39.0 27.0 41.0 20 35.368155442471824 36.0 34.0 39.0 30.0 40.0 21 35.51877351124991 36.0 34.0 39.0 30.0 40.0 22 35.8926832630246 37.0 34.0 40.0 31.0 41.0 23 36.26178918490219 37.0 35.0 40.0 31.0 41.0 24 35.79337976692681 36.0 34.0 40.0 31.0 41.0 25 35.500867672487836 36.0 34.0 40.0 30.0 41.0 26 35.64337992122542 37.0 34.0 40.0 30.0 41.0 27 35.96940361531918 37.0 35.0 40.0 31.0 41.0 28 35.88071586323383 37.0 35.0 40.0 31.0 41.0 29 36.00075709182104 37.0 35.0 40.0 31.0 41.0 30 35.640950232528 37.0 35.0 40.0 30.0 41.0 31 34.93397562699238 36.0 34.0 40.0 28.0 41.0 32 34.963070171919505 36.0 34.0 40.0 27.0 41.0 33 34.74983978661532 37.0 34.0 40.0 25.0 41.0 34 34.427085165629265 37.0 34.0 40.0 23.0 41.0 35 34.19689942096877 37.0 34.0 40.0 22.0 41.0 36 33.87294127086503 36.0 33.0 40.0 21.0 41.0 37 33.804460464068484 36.0 33.0 40.0 20.0 41.0 38 33.63576065611881 36.0 33.0 40.0 19.0 41.0 39 33.363692098162716 36.0 33.0 40.0 18.0 41.0 40 33.18319050425813 35.0 33.0 40.0 18.0 40.0 41 32.85819958215938 35.0 32.0 39.0 17.0 40.0 42 33.056028909386605 35.0 33.0 39.0 18.0 40.0 43 32.85452830402174 35.0 32.0 39.0 17.0 40.0 44 32.71653186111891 35.0 32.0 39.0 17.0 40.0 45 32.67132545587523 35.0 32.0 39.0 18.0 40.0 46 32.502237844098744 35.0 32.0 39.0 18.0 40.0 47 32.4597501802722 35.0 32.0 39.0 18.0 40.0 48 32.44676955297637 35.0 32.0 38.0 18.0 40.0 49 32.49681373381022 35.0 32.0 39.0 18.0 40.0 50 32.585621838807334 35.0 32.0 39.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 4.0 11 4.0 12 9.0 13 20.0 14 53.0 15 113.0 16 270.0 17 580.0 18 1022.0 19 1846.0 20 2743.0 21 4088.0 22 5907.0 23 8131.0 24 11912.0 25 17517.0 26 24151.0 27 27818.0 28 27497.0 29 27637.0 30 30711.0 31 37905.0 32 50038.0 33 76560.0 34 116820.0 35 92140.0 36 99458.0 37 134578.0 38 142562.0 39 30047.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.784301865675864 22.813871650305874 27.651647240472315 20.750179243545947 2 38.05240186351568 20.10335949209014 29.066668312518452 12.777570331875726 3 29.65032850172969 19.553542130205393 37.7954432536021 13.00068611446282 4 26.198154382954737 25.11960713517895 33.955362442279466 14.72687603958685 5 21.231488024885277 29.177351845051287 35.421302053920165 14.169858076143276 6 19.60271195227853 37.39046084878634 32.88987914304612 10.116948055889011 7 78.78702780769457 4.384034826223767 14.403260432385837 2.4256769336958324 8 80.10340063838476 3.2371847293756773 14.212958819759686 2.446455812479877 9 76.7733281489002 4.460875531430111 15.3933431467246 3.3724531729450766 10 46.45365229940924 21.85135695336376 20.375645096750368 11.319345650476627 11 38.38249801211964 21.279320592383204 26.515083717279698 13.823097678217461 12 33.77874197261509 20.886270613007785 31.114005067166183 14.220982347210951 13 22.28092426921609 29.840630114355836 32.362486511730296 15.515959104697775 14 17.505176718192114 31.337120849753276 35.28778232787219 15.869920104182416 15 16.758680068014826 21.36264183899249 45.545965040050774 16.33271305294191 16 19.875409019884977 17.738373342961566 43.65642432527792 18.72979331187554 17 20.378319605900792 18.015287905766755 33.32397255130686 28.282419937025594 18 22.815003173407973 21.83747007892888 36.53688096685563 18.810645780807516 19 27.196466356217876 22.588081358568356 30.81106547301266 19.40438681220111 20 27.54086084220293 22.13125462252904 30.339323205172914 19.98856133009512 21 23.667348666500025 23.881000801324088 33.180474848813084 19.271175683362802 22 22.91786890996265 21.275205962921017 32.0821773796188 23.724747747497535 23 20.814778926102285 25.252303935334485 31.450067428490314 22.482849710072923 24 21.13489709826044 22.15151917263031 38.07996988091234 18.633613848196916 25 20.54064173818407 22.179807250182844 36.357483122304274 20.92206788932881 26 18.742240065998654 26.21440716933037 32.86251685712258 22.180835907548392 27 19.059580863269833 25.764163840430555 35.003975760717836 20.172279535581772 28 17.71913745022584 24.227452602040238 38.95113980379389 19.102270143940025 29 18.67393721692635 23.368009373125915 37.62952082053941 20.328532589408326 30 21.378174565212248 24.331141264487353 35.45267610356934 18.83800806673106 31 27.519156171789895 22.35725064573966 30.770536372810113 19.353056809660327 32 27.304989708283056 23.31338766701538 30.881117039606394 18.500505585095166 33 26.012687459946655 23.42726003738141 29.52421510871365 21.035837393958285 34 20.871560812680464 24.94072361931037 31.826864621490092 22.360850946519076 35 21.382597791884102 24.45694606029372 33.00323718472938 21.157218963092802 36 28.191692357384373 23.86629100099677 28.24250803124238 19.69950861037648 37 21.876764790292764 28.793765513438895 28.51911399683791 20.81035569943043 38 22.75647256930836 28.924816461809556 26.86667880482358 21.452032164058508 39 21.837572944665435 26.956583458572368 27.68250696143872 23.523336635323478 40 24.219531940325528 23.841603224223647 28.453279925442914 23.485584910007912 41 20.11745209799813 23.039147613360615 29.722643114527624 27.12075717411363 42 22.945642658832412 24.31962030199323 27.700097002389573 25.03464003678479 43 22.128374381905505 24.040031230037616 28.61765937245729 25.21393501559959 44 21.106300423498237 25.81436231986924 30.395487897331762 22.68384935930076 45 20.311251145667143 29.915104907621426 26.84466553720088 22.928978409510556 46 23.03842755320473 26.5756716361104 28.950327164475116 21.435573646209757 47 21.915956635920097 25.672201871950673 30.041938360793342 22.369903131335885 48 22.408992111226663 24.18826075641291 31.49841432467101 21.90433280768942 49 22.343672368514444 23.66950884696767 31.805365682550164 22.18145310196772 50 20.41751145152812 27.520081963418885 30.45360703848516 21.608799546567834 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 432.0 1 1096.0 2 1760.0 3 13950.0 4 26140.0 5 17937.0 6 9734.0 7 9725.0 8 9716.0 9 10027.0 10 10338.0 11 10262.5 12 10187.0 13 9695.5 14 9204.0 15 8564.5 16 7925.0 17 7242.0 18 6559.0 19 6228.0 20 5897.0 21 5615.5 22 5334.0 23 5354.5 24 5375.0 25 5396.0 26 5417.0 27 5911.5 28 6406.0 29 7293.5 30 8181.0 31 10285.0 32 12389.0 33 14827.5 34 17266.0 35 19297.0 36 21328.0 37 23539.5 38 25751.0 39 31260.5 40 36770.0 41 45775.5 42 54781.0 43 63348.5 44 71916.0 45 74399.5 46 76883.0 47 74822.5 48 72762.0 49 74353.5 50 75945.0 51 70398.0 52 64851.0 53 59387.0 54 53923.0 55 51692.0 56 49461.0 57 47766.0 58 46071.0 59 43303.5 60 40536.0 61 38144.0 62 35752.0 63 31469.0 64 27186.0 65 23367.0 66 19548.0 67 16644.5 68 13741.0 69 12142.0 70 10543.0 71 8517.0 72 6491.0 73 5405.0 74 4319.0 75 3426.5 76 2534.0 77 1967.0 78 1400.0 79 1052.5 80 705.0 81 534.5 82 364.0 83 253.0 84 142.0 85 113.5 86 85.0 87 64.0 88 43.0 89 33.5 90 24.0 91 19.5 92 15.0 93 11.0 94 7.0 95 4.0 96 1.0 97 2.0 98 3.0 99 1.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 972141.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.544025610725278 #Duplication Level Percentage of deduplicated Percentage of total 1 75.00502220637158 21.409452747916884 2 7.373624820693416 4.2094587145150495 3 3.4644722127988845 2.9666995070933226 4 2.1393738463762797 2.4426536744752156 5 1.5349011798009644 2.1906129293085583 6 1.161698772758888 1.9895735712946698 7 0.8918119808138447 1.7819132814211418 8 0.7096565233346745 1.6205163181506568 9 0.5952246181200567 1.5291096069377765 >10 6.2183873776546505 39.301169502586816 >50 0.834916728246213 15.581962569273545 >100 0.06800061577796854 2.8149853985350295 >500 0.0025454775959666102 0.4545288001542941 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 3.636396565666586E-4 1.7073633783370594 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16449 1.6920385005878775 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.025304971192450478 0.0 2 0.0 0.0 0.0 0.08434990397483492 0.0 3 0.0 0.0 0.0 0.12066150897863581 0.0 4 0.0 0.0 0.0 0.183923936959762 0.0 5 0.0 0.0 0.0 0.34614320350648725 0.0 6 0.0 0.0 0.0 0.5095968588918686 0.0 7 0.0 0.0 0.0 0.6247036180965518 0.0 8 0.0 0.0 0.0 0.9099503055626704 0.0 9 0.0 0.0 0.0 1.0433671658740862 0.0 10 0.0 0.0 0.0 1.2678202030363908 0.0 11 0.0 0.0 0.0 1.4700542411028852 0.0 12 0.0 0.0 0.0 1.649966414337015 0.0 13 0.0 0.0 0.0 1.7200179809307499 0.0 14 1.0286573655467675E-4 0.0 0.0 1.7460430122790829 0.0 15 1.0286573655467675E-4 0.0 0.0 1.7826632144925478 0.0 16 1.0286573655467675E-4 0.0 0.0 1.859298188225782 0.0 17 1.0286573655467675E-4 0.0 0.0 1.9561977120602876 0.0 18 1.0286573655467675E-4 0.0 0.0 2.100826937656163 0.0 19 3.085972096640302E-4 0.0 0.0 2.1649122915297268 0.0 20 3.085972096640302E-4 0.0 0.0 2.246896283563804 0.0 21 3.085972096640302E-4 0.0 0.0 2.341018432511333 0.0 22 3.085972096640302E-4 0.0 0.0 2.4357577758781903 0.0 23 3.085972096640302E-4 0.0 0.0 2.5410922901101793 0.0 24 3.085972096640302E-4 0.0 0.0 2.6212246988862726 0.0 25 3.085972096640302E-4 0.0 0.0 2.696522418044296 0.0 26 3.085972096640302E-4 0.0 0.0 2.766265387428367 0.0 27 4.11462946218707E-4 0.0 0.0 2.841871703796054 0.0 28 4.11462946218707E-4 0.0 0.0 2.921901246835593 0.0 29 4.11462946218707E-4 0.0 0.0 3.0149947384175753 0.0 30 4.11462946218707E-4 0.0 0.0 3.14707434415378 0.0 31 4.11462946218707E-4 0.0 0.0 3.2510716038105585 0.0 32 5.143286827733837E-4 0.0 0.0 3.352702951526579 0.0 33 5.143286827733837E-4 0.0 0.0 3.4555686880812555 0.0 34 5.143286827733837E-4 0.0 0.0 3.569749655656947 0.0 35 5.143286827733837E-4 0.0 0.0 3.704915233489792 0.0 36 6.171944193280604E-4 0.0 0.0 3.8079867015175783 0.0 37 6.171944193280604E-4 0.0 0.0 3.9105438408625908 0.0 38 6.171944193280604E-4 0.0 0.0 4.045195090012663 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTACGA 20 7.8558805E-4 44.000004 38 CTAACGG 40 8.310963E-9 44.000004 2 TACGATC 20 7.8558805E-4 44.000004 11 GCGATAT 110 0.0 44.000004 9 TAGTACG 20 7.8558805E-4 44.000004 1 CTATACG 30 2.527313E-6 44.0 26 CGTTCGA 25 4.442331E-5 44.0 14 CGTTCAC 35 1.4457692E-7 44.0 20 AATACGG 35 1.4457692E-7 44.0 2 TACGTTC 25 4.442331E-5 44.0 41 CGTTTTT 10065 0.0 42.666668 1 TGTACGG 115 0.0 42.08696 2 CTACGGG 155 0.0 41.161293 3 ATAACGC 65 0.0 40.615383 11 TCGTTGA 60 3.6379788E-12 40.333332 24 TAACGGG 155 0.0 39.741936 3 TACGGGA 150 0.0 39.6 4 ACAACGA 95 0.0 39.36842 13 AACGGGA 190 0.0 39.36842 4 TCACGAC 210 0.0 38.761906 25 >>END_MODULE