##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546053_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 390663 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.121943977289888 31.0 28.0 33.0 25.0 33.0 2 28.8022182802057 31.0 28.0 33.0 16.0 33.0 3 28.269969257390642 31.0 27.0 33.0 16.0 34.0 4 32.14405254656827 35.0 32.0 35.0 25.0 37.0 5 33.62641714214041 35.0 33.0 35.0 28.0 37.0 6 33.44206131627515 35.0 33.0 37.0 28.0 37.0 7 34.27992668873172 35.0 33.0 37.0 31.0 37.0 8 34.68835287703212 35.0 35.0 37.0 32.0 37.0 9 36.41757217857847 39.0 37.0 39.0 32.0 39.0 10 36.38010766312653 39.0 35.0 39.0 32.0 39.0 11 36.36398123190576 38.0 35.0 39.0 32.0 39.0 12 34.96015747588075 37.0 33.0 39.0 29.0 39.0 13 34.585125798962274 37.0 33.0 39.0 25.0 39.0 14 35.38058889631217 37.0 33.0 40.0 26.0 41.0 15 36.12718634731213 38.0 34.0 40.0 30.0 41.0 16 35.76005918144283 36.0 34.0 40.0 30.0 41.0 17 35.325211243450234 36.0 33.0 40.0 29.0 41.0 18 34.98048701822287 36.0 33.0 39.0 29.0 40.0 19 34.35448455574242 36.0 32.0 38.0 27.0 40.0 20 34.776669405600224 35.0 34.0 38.0 29.0 40.0 21 34.966359752523275 35.0 34.0 39.0 30.0 40.0 22 35.349219147961286 35.0 34.0 39.0 30.0 40.0 23 35.71701440883831 35.0 34.0 39.0 31.0 41.0 24 35.42251761748617 35.0 34.0 39.0 31.0 41.0 25 35.06461835392653 35.0 34.0 39.0 30.0 41.0 26 35.091214166685866 35.0 34.0 39.0 30.0 41.0 27 35.33899038301554 35.0 34.0 40.0 31.0 41.0 28 35.29926304769072 35.0 34.0 40.0 30.0 41.0 29 35.45157079119343 36.0 35.0 40.0 31.0 41.0 30 35.087156961370795 36.0 34.0 40.0 30.0 41.0 31 34.342684103690395 35.0 34.0 39.0 27.0 40.0 32 34.186598167730246 35.0 34.0 39.0 25.0 40.0 33 33.81947612136291 35.0 33.0 39.0 23.0 41.0 34 33.50411479971228 35.0 33.0 40.0 21.0 41.0 35 33.22801749845775 35.0 33.0 40.0 18.0 41.0 36 32.808167141500476 35.0 33.0 39.0 16.0 41.0 37 32.69597581547267 35.0 33.0 39.0 15.0 40.0 38 32.58118890194362 35.0 32.0 39.0 15.0 40.0 39 32.42726339581686 35.0 32.0 39.0 15.0 40.0 40 32.245738654543686 35.0 31.0 39.0 15.0 40.0 41 31.949117269871987 35.0 31.0 38.0 12.0 40.0 42 32.12928278337083 35.0 32.0 39.0 12.0 40.0 43 31.882136265784066 35.0 31.0 38.0 10.0 40.0 44 31.704215653901187 35.0 31.0 38.0 10.0 40.0 45 31.671128312637748 35.0 31.0 38.0 10.0 40.0 46 31.496494421022724 35.0 31.0 38.0 10.0 40.0 47 31.475944740095684 35.0 31.0 38.0 10.0 40.0 48 31.570565935345808 35.0 31.0 38.0 10.0 40.0 49 31.54438992174841 35.0 31.0 38.0 10.0 40.0 50 31.619933292889268 35.0 31.0 38.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 5.0 12 5.0 13 3.0 14 26.0 15 64.0 16 115.0 17 213.0 18 562.0 19 932.0 20 1411.0 21 1953.0 22 2816.0 23 3900.0 24 5689.0 25 8663.0 26 11949.0 27 13949.0 28 12957.0 29 12248.0 30 13410.0 31 16327.0 32 22185.0 33 35193.0 34 57945.0 35 37167.0 36 31850.0 37 42740.0 38 46021.0 39 10363.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.806385554813225 21.55796684098571 27.72671074557867 24.908936858622393 2 37.47961798276263 20.589101092245745 29.53415091779872 12.3971300071929 3 27.12235353744788 18.945229008122087 41.25269093822553 12.679726516204504 4 25.18564594036292 23.57428269377955 37.614772834898616 13.625298530958908 5 19.885937496000388 28.79361495713697 37.711531422223246 13.608916124639395 6 17.444702979294174 36.070731039284496 35.56722802005821 10.917337961363119 7 73.11007185221021 5.5820489782753935 18.556914783329876 2.750964386184512 8 74.77621376992445 3.9801568103454894 17.834553054678842 3.4090763650512077 9 71.1518623468309 4.921889198618758 19.46895406014903 4.457294394401313 10 50.03391670058337 17.556564097444603 22.67760192288494 9.73191727908709 11 45.420221520850454 15.7644824311491 27.7190314926164 11.096264555384053 12 39.55583200866219 18.41177690234294 30.471019779195878 11.561371309798982 13 18.64625009279097 38.55624924807315 31.15293744224562 11.64456321689026 14 12.407880961340082 39.25224554155371 34.85075371867825 13.489119778427956 15 11.007953146317927 19.242928047959495 56.706675574600105 13.042443231122478 16 12.20258893214868 14.438787394762237 54.38242167801916 18.976201995069918 17 12.758822821715905 16.011242426336768 36.821250028797195 34.40868472315014 18 18.429439184156166 19.617163642320875 42.82744974568874 19.12594742783422 19 25.225834030865478 20.948234155781325 33.66123743482234 20.164694378530857 20 27.59846722110873 18.921167348840303 33.33563710922201 20.14472832082895 21 17.974827408789672 26.045210321939884 35.85903963262454 20.120922636645908 22 19.593869908335318 21.14866265809662 33.141607984375284 26.11585944919278 23 15.95825558089709 26.574310851040412 33.17590864760676 24.291524920455736 24 16.700839342348775 19.34710991314765 47.599849486641936 16.352201257861633 25 14.711912825120372 21.261035726444533 43.96807478568485 20.058976662750247 26 14.624625316449217 30.482538658639285 35.488899639843034 19.40393638506846 27 15.13606356373652 30.278014554744114 36.191295310792164 18.394626570727198 28 12.832287675054971 24.44280620381249 46.83960344337702 15.885302677755508 29 13.10182945403071 20.555568354310495 45.83157350452948 20.511028687129315 30 16.284623831793642 27.03941760545534 39.01444467482204 17.661513887928983 31 26.134033681203494 23.683072110745066 31.763438052746228 18.419456155305213 32 27.14590324653218 23.196463448035775 32.93657193028262 16.721061375149425 33 24.645794457115212 24.351423093561458 31.815912947988416 19.18686950133491 34 17.032071120121433 24.92480731474442 33.91772448376222 24.125397081371926 35 18.365445409470567 23.116343242129407 36.40298671745212 22.115224630947903 36 27.538825023101754 22.768729058037234 30.902337820576815 18.7901080982842 37 18.515958767531092 29.274336192575184 32.82035923545358 19.389345804440143 38 19.12492352743925 30.41291343178136 28.472622183314005 21.989540857465386 39 19.334055183111786 28.555814090405285 31.182886528798477 20.92724419768445 40 21.91479612863261 24.345791641389127 29.2116222933833 24.527789936594967 41 16.44895984518626 22.336643091360074 31.07998453910404 30.134412524349628 42 20.635944535315602 23.958757292090628 27.220136025167474 28.185162147426297 43 21.18501112211804 24.79323611399083 28.838410599416886 25.183342164474237 44 18.01219977320606 28.84173827570054 30.495081438477666 22.65098051261573 45 15.739652846571087 34.99281989848028 26.966720677412503 22.300806577536136 46 21.802679035383438 30.13518044964586 28.880902465808127 19.181238049162577 47 20.580397938888506 24.849550635714156 30.640731269662087 23.92932015573525 48 21.676227336604693 21.57102157102157 33.45517748033471 23.29757361203902 49 19.604364887383756 21.44584974773654 35.995474360254235 22.95431100462547 50 17.954349400890283 30.068626923972836 30.518887122660708 21.458136552476176 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 196.0 1 349.5 2 503.0 3 5443.5 4 10384.0 5 7464.5 6 4545.0 7 4842.0 8 5139.0 9 5487.5 10 5836.0 11 6044.0 12 6252.0 13 5861.0 14 5470.0 15 5079.0 16 4688.0 17 4230.5 18 3773.0 19 3444.5 20 3116.0 21 2965.0 22 2814.0 23 2595.5 24 2377.0 25 2320.5 26 2264.0 27 2336.0 28 2408.0 29 2622.5 30 2837.0 31 3811.5 32 4786.0 33 5456.0 34 6126.0 35 7163.5 36 8201.0 37 8267.0 38 8333.0 39 12033.0 40 15733.0 41 23530.5 42 31328.0 43 37971.0 44 44614.0 45 43264.5 46 41915.0 47 38249.0 48 34583.0 49 31729.5 50 28876.0 51 26920.5 52 24965.0 53 22087.5 54 19210.0 55 16699.5 56 14189.0 57 12649.5 58 11110.0 59 10282.5 60 9455.0 61 8568.5 62 7682.0 63 6526.5 64 5371.0 65 4655.0 66 3939.0 67 3283.5 68 2628.0 69 2243.5 70 1859.0 71 1641.5 72 1424.0 73 1057.5 74 691.0 75 604.0 76 517.0 77 372.0 78 227.0 79 178.0 80 129.0 81 100.0 82 71.0 83 53.5 84 36.0 85 38.0 86 40.0 87 28.5 88 17.0 89 11.0 90 5.0 91 2.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 390663.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.84289121859548 #Duplication Level Percentage of deduplicated Percentage of total 1 77.00231986957881 23.74974175316913 2 7.999733656612144 4.934698298972508 3 3.5179617587695486 3.2551233551072407 4 2.0398823657587806 2.516634796233171 5 1.3468453575256825 2.077030242521748 6 0.8745951412074867 1.61850256803448 7 0.63451009823081 1.3699088155783243 8 0.49165412660651514 1.2131227795278654 9 0.3870101475635707 1.0742860693616219 >10 4.719692203971806 34.29592207352757 >50 0.9044069533078269 18.49235406735932 >100 0.0788968416567893 3.313531487593985 >500 0.001660986140142933 0.2943141372329537 >1k 0.0 0.0 >5k 8.304930700714665E-4 1.7948295557800753 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7007 1.7936175168879571 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCC 640 0.16382406319513237 No Hit GAATCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTT 509 0.13029132525987872 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 436 0.11160514305168392 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0588742727107507 0.0 2 0.0 0.0 0.0 0.27210152996316517 0.0 3 0.0 0.0 0.0 0.3519657607707922 0.0 4 0.0 0.0 0.0 0.5459948856175272 0.0 5 2.5597509874239434E-4 0.0 0.0 1.012637490624912 0.0 6 2.5597509874239434E-4 0.0 0.0 1.3149440822396796 0.0 7 2.5597509874239434E-4 0.0 0.0 1.5842298861166786 0.0 8 2.5597509874239434E-4 0.0 0.0 2.241573939687147 0.0 9 2.5597509874239434E-4 0.0 0.0 2.493965387047148 0.0 10 2.5597509874239434E-4 0.0 0.0 3.057366579379158 0.0 11 2.5597509874239434E-4 0.0 0.0 3.3496901421429723 0.0 12 2.5597509874239434E-4 0.0 0.0 3.741076068120093 0.0 13 2.5597509874239434E-4 0.0 0.0 3.8782787210460166 0.0 14 2.5597509874239434E-4 0.0 0.0 3.9202586372397694 0.0 15 2.5597509874239434E-4 0.0 0.0 3.9978190921587147 0.0 16 2.5597509874239434E-4 0.0 0.0 4.136557595677092 0.0 17 2.5597509874239434E-4 0.0 0.0 4.307292986538269 0.0 18 2.5597509874239434E-4 0.0 0.0 4.575810865119041 0.0 19 2.5597509874239434E-4 0.0 0.0 4.673849327937378 0.0 20 2.5597509874239434E-4 0.0 0.0 4.778031193125533 0.0 21 2.5597509874239434E-4 0.0 0.0 4.901411190719367 0.0 22 5.119501974847887E-4 0.0 0.0 5.0183918108446415 0.0 23 5.119501974847887E-4 0.0 0.0 5.168137243608942 0.0 24 5.119501974847887E-4 0.0 0.0 5.276414710376975 0.0 25 5.119501974847887E-4 0.0 0.0 5.350903464111012 0.0 26 7.67925296227183E-4 0.0 0.0 5.430511719819896 0.0 27 7.67925296227183E-4 0.0 0.0 5.513703626911174 0.0 28 0.0010239003949695773 0.0 0.0 5.602271011076042 0.0 29 0.0010239003949695773 0.0 0.0 5.684183042673609 0.0 30 0.0010239003949695773 0.0 0.0 5.799883787305171 0.0 31 0.0012798754937119717 0.0 0.0 5.913280756048052 0.0 32 0.0012798754937119717 0.0 0.0 6.015414820446267 0.0 33 0.0012798754937119717 0.0 0.0 6.114733158758316 0.0 34 0.0012798754937119717 0.0 0.0 6.210467845687972 0.0 35 0.0012798754937119717 0.0 0.0 6.357653527464848 0.0 36 0.0012798754937119717 0.0 0.0 6.449036637715883 0.0 37 0.0012798754937119717 0.0 0.0 6.54809900092919 0.0 38 0.0012798754937119717 0.0 0.0 6.643321737661361 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGATCGG 20 7.8500924E-4 44.000004 2 ATTTACG 20 7.8500924E-4 44.000004 1 CGGAAAT 20 7.8500924E-4 44.000004 39 TCGTTGA 80 0.0 44.000004 24 GACCGTC 20 7.8500924E-4 44.000004 10 CGTTGAT 80 0.0 44.000004 25 CGATTCT 20 7.8500924E-4 44.000004 10 CCGTCGG 20 7.8500924E-4 44.000004 12 ATCGTAG 20 7.8500924E-4 44.000004 1 CACTCGC 20 7.8500924E-4 44.000004 10 GCTTAAG 20 7.8500924E-4 44.000004 1 CGGGATA 20 7.8500924E-4 44.000004 6 ACTCGCT 20 7.8500924E-4 44.000004 11 CTACAAC 20 7.8500924E-4 44.000004 40 AACTCGT 20 7.8500924E-4 44.000004 44 GACGAGG 40 8.289135E-9 44.000004 2 AGAATGC 20 7.8500924E-4 44.000004 21 TATCCAG 20 7.8500924E-4 44.000004 1 AGGTATG 30 2.5234112E-6 44.0 1 GTCGATG 35 1.4428042E-7 44.0 1 >>END_MODULE