##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546052_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 393491 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.10701896612629 31.0 28.0 33.0 25.0 33.0 2 28.77052588242171 31.0 28.0 33.0 16.0 33.0 3 28.24618352135119 31.0 27.0 33.0 16.0 34.0 4 32.11993921080787 35.0 32.0 35.0 25.0 37.0 5 33.66002526106061 35.0 33.0 35.0 28.0 37.0 6 33.52904640766879 35.0 33.0 37.0 28.0 37.0 7 34.32664279487968 35.0 35.0 37.0 31.0 37.0 8 34.72282720570483 35.0 35.0 37.0 32.0 37.0 9 36.523069142623335 39.0 37.0 39.0 32.0 39.0 10 36.398888411679046 39.0 35.0 39.0 32.0 39.0 11 36.4257657735501 39.0 35.0 39.0 32.0 39.0 12 34.91962204980546 35.0 33.0 39.0 29.0 39.0 13 34.61706366854642 37.0 33.0 39.0 25.0 39.0 14 35.40121375075923 37.0 33.0 40.0 26.0 41.0 15 36.16701779710336 38.0 34.0 40.0 31.0 41.0 16 35.7903738586143 36.0 34.0 40.0 30.0 41.0 17 35.361505091603114 36.0 33.0 40.0 29.0 41.0 18 35.05887555242687 36.0 33.0 39.0 29.0 40.0 19 34.42013921538231 36.0 32.0 38.0 27.0 40.0 20 34.75368178687695 35.0 34.0 39.0 29.0 40.0 21 34.88436076047483 35.0 34.0 39.0 29.0 40.0 22 35.316401137510134 35.0 34.0 39.0 30.0 40.0 23 35.71725147462077 35.0 34.0 39.0 31.0 41.0 24 35.28140923172322 35.0 34.0 39.0 31.0 41.0 25 34.94553115573164 35.0 34.0 39.0 30.0 40.0 26 35.04644070639481 35.0 34.0 39.0 30.0 40.0 27 35.35828265449528 35.0 34.0 39.0 31.0 41.0 28 35.31884083752868 35.0 34.0 40.0 31.0 41.0 29 35.46795733574593 36.0 35.0 40.0 31.0 41.0 30 35.09994383607249 36.0 34.0 40.0 30.0 41.0 31 34.35648591708578 35.0 34.0 39.0 27.0 40.0 32 34.22999763654061 35.0 34.0 39.0 25.0 40.0 33 33.87931871376982 35.0 33.0 39.0 23.0 41.0 34 33.49566826178998 35.0 33.0 40.0 21.0 41.0 35 33.249609266793904 35.0 33.0 40.0 18.0 41.0 36 32.81670482933536 35.0 33.0 39.0 16.0 41.0 37 32.71120051030392 35.0 33.0 39.0 15.0 40.0 38 32.626415851950874 35.0 32.0 39.0 15.0 40.0 39 32.42476956270919 35.0 32.0 39.0 15.0 40.0 40 32.20745074220249 35.0 31.0 39.0 15.0 40.0 41 31.91527125143904 35.0 31.0 38.0 12.0 40.0 42 32.092093592991965 35.0 32.0 39.0 12.0 40.0 43 31.854024615556646 35.0 31.0 38.0 10.0 40.0 44 31.66651079694326 35.0 31.0 38.0 10.0 40.0 45 31.609005034422644 35.0 31.0 38.0 10.0 40.0 46 31.450610052072346 35.0 31.0 38.0 10.0 40.0 47 31.435750754146856 35.0 31.0 38.0 10.0 40.0 48 31.535636139073066 35.0 31.0 38.0 10.0 40.0 49 31.57014264621046 35.0 31.0 38.0 10.0 40.0 50 31.662711472435202 35.0 31.0 38.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 2.0 13 2.0 14 21.0 15 46.0 16 111.0 17 239.0 18 480.0 19 941.0 20 1325.0 21 1980.0 22 2782.0 23 3909.0 24 5809.0 25 8679.0 26 12198.0 27 13894.0 28 12921.0 29 12715.0 30 13097.0 31 16385.0 32 22114.0 33 35583.0 34 59153.0 35 37343.0 36 32401.0 37 43979.0 38 45995.0 39 9386.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.64963366379409 21.58168801827742 27.676617762540946 25.092060555387548 2 37.65727805718555 20.570737323089983 29.38669499429466 12.385289625429806 3 27.019423570043532 18.90259243540513 41.33055139761773 12.747432596933603 4 25.0145492527148 23.613500689977663 37.752324703741635 13.619625353565901 5 19.890670942918643 28.706882749541922 37.80543900622886 13.597007301310576 6 17.52009575822573 36.036148221941545 35.67095562541456 10.77280039441817 7 72.86011624154047 5.594282969623193 18.761801413501196 2.783799375335141 8 74.60348521313067 4.01076517633186 18.026079376656647 3.3596702338808258 9 71.05931266534685 4.952336902241729 19.61823777418035 4.370112658231065 10 49.949045848570876 17.30890922536983 22.81119517346013 9.93084975259917 11 45.42492712666872 15.751313244775611 27.724903492074787 11.098856136480885 12 39.61539145749204 18.14577715881685 30.441611116899754 11.797220266791362 13 18.694455527572423 38.48016854260962 31.22307752909215 11.602298400725811 14 12.2971046351759 39.42758538314726 34.89914635912893 13.37616362254791 15 10.905713218345529 19.179091770841012 56.80917733823645 13.106017672577009 16 12.210444457433587 14.443024109827164 54.47570592465901 18.870825508080237 17 12.746670190677806 15.92565014193463 36.96221768731686 34.3654619800707 18 18.345273462417182 19.633231763877703 42.89882106579312 19.122673707911996 19 25.175416972688065 21.020302878591888 33.69861064166652 20.105669507053527 20 27.6006312723798 18.83423000780196 33.42871882711422 20.136419892704026 21 18.095966616771413 25.89029990520749 36.05292115956909 19.96081231845201 22 19.53945579441461 21.071384097730316 33.269121784233946 26.120038323621124 23 15.939373454538986 26.57544899375081 33.35527369113906 24.129903860571144 24 16.558447334246527 19.23906772963041 47.72205717538648 16.480427760736585 25 14.587373027591482 21.360336068677555 44.121974835510855 19.93031606822011 26 14.689535465868342 30.407048699970268 35.4795916552094 19.423824178951996 27 15.13859275053305 30.13791929167376 36.41658894358448 18.30689901420871 28 12.758614555351965 24.45214757135487 46.8719742001723 15.91726367312086 29 12.953028150580318 20.618006510949424 45.99774836019121 20.431216978279046 30 16.19376300855674 26.96275137169592 39.15693116233916 17.686554457408175 31 26.15460074055061 23.76953983699754 31.75371228312719 18.32214713932466 32 27.175208581644817 23.07600427964045 33.04776983463408 16.701017304080654 33 24.55812204091072 24.355067841449994 31.886625107054545 19.20018501058474 34 16.93609256628487 24.905525158135763 33.94054756017291 24.217834715406454 35 18.30689901420871 23.040679456455166 36.60337847625485 22.049043053081267 36 27.597327511938012 22.68158610997456 30.887364641122666 18.83372173696476 37 18.558493078621872 29.111974606788976 33.02972621991354 19.29980609467561 38 19.055836092820417 30.435003596016173 28.474602976942293 22.034557334221113 39 19.254061719327762 28.49391726875583 31.188769247581266 21.063251764335146 40 21.924262562549078 24.34515656012463 29.221761107623806 24.508819769702484 41 16.53913304243299 22.285897263215677 31.014686485840848 30.160283208510485 42 20.506186926765796 24.11846776673418 27.343446228757458 28.031899077742565 43 21.107979598008594 24.818102574137654 28.877915886259153 25.1960019415946 44 18.02684178291244 28.780836156354273 30.595617180570837 22.596704880162445 45 15.604168837406702 34.99343059942921 27.055510799484612 22.346889763679474 46 21.601764716346754 30.409335918737657 28.822768500423134 19.16613086449245 47 20.482552332836075 24.950252991809215 30.749369108823327 23.817825566531383 48 21.648525633368997 21.649796310461994 33.44930379602074 23.25237426014826 49 19.661440795342205 21.414975183676376 36.030557242732364 22.893026778249055 50 18.041327501772596 30.145543354231734 30.46677052334107 21.346358620654602 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 189.0 1 342.0 2 495.0 3 5648.0 4 10801.0 5 7778.5 6 4756.0 7 5003.0 8 5250.0 9 5733.0 10 6216.0 11 6196.0 12 6176.0 13 5840.0 14 5504.0 15 5085.0 16 4666.0 17 4245.0 18 3824.0 19 3400.5 20 2977.0 21 2931.5 22 2886.0 23 2602.0 24 2318.0 25 2297.0 26 2276.0 27 2396.0 28 2516.0 29 2662.5 30 2809.0 31 3768.5 32 4728.0 33 5438.0 34 6148.0 35 7131.5 36 8115.0 37 8351.5 38 8588.0 39 12256.0 40 15924.0 41 23651.5 42 31379.0 43 38412.5 44 45446.0 45 43693.5 46 41941.0 47 38134.5 48 34328.0 49 31879.0 50 29430.0 51 27040.5 52 24651.0 53 21851.5 54 19052.0 55 16579.0 56 14106.0 57 12510.0 58 10914.0 59 10320.5 60 9727.0 61 8793.5 62 7860.0 63 6731.0 64 5602.0 65 4822.0 66 4042.0 67 3345.0 68 2648.0 69 2312.0 70 1976.0 71 1744.5 72 1513.0 73 1100.5 74 688.0 75 598.0 76 508.0 77 362.0 78 216.0 79 173.0 80 130.0 81 111.5 82 93.0 83 57.5 84 22.0 85 28.0 86 34.0 87 25.0 88 16.0 89 10.0 90 4.0 91 2.5 92 1.0 93 1.0 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 393491.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.732151902094486 #Duplication Level Percentage of deduplicated Percentage of total 1 76.78740679028905 23.598422496470846 2 7.991138263996741 4.911697499995748 3 3.5475798330791357 3.2707428694498497 4 2.1197438301725273 2.6057715752955866 5 1.3244693557681129 2.0351896715567435 6 0.9461590925606463 1.7446502973672995 7 0.6602675906122168 1.4204010723507206 8 0.48877134527059946 1.2016796182597704 9 0.38521656052783176 1.065468046800933 >10 4.764253827345525 34.40095939152194 >50 0.9054650183706594 18.3413055841869 >100 0.07704322663172125 3.301292433721323 >500 0.0016568435834778763 0.2757229664317261 >1k 0.0 0.0 >5k 8.284217917389382E-4 1.8266964765906142 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7175 1.8234216284489353 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCC 557 0.14155342815972918 No Hit GAATCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTT 526 0.13367523018315539 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 472 0.11995191757880105 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06683761509157769 0.0 2 0.0 0.0 0.0 0.2518481998317624 0.0 3 0.0 0.0 0.0 0.326818148318513 0.0 4 0.0 0.0 0.0 0.5047129413379213 0.0 5 0.0 0.0 0.0 0.9583446635374125 0.0 6 0.0 0.0 0.0 1.2503462595078414 0.0 7 0.0 0.0 0.0 1.5070230322929876 0.0 8 0.0 0.0 0.0 2.145157068395465 0.0 9 0.0 0.0 0.0 2.397767674483025 0.0 10 0.0 0.0 0.0 2.938313709843427 0.0 11 0.0 0.0 0.0 3.222182972418683 0.0 12 0.0 0.0 0.0 3.6079605378522 0.0 13 0.0 0.0 0.0 3.747480882663136 0.0 14 0.0 0.0 0.0 3.7876342788018023 0.0 15 0.0 0.0 0.0 3.864637310637346 0.0 16 0.0 0.0 0.0 4.012289988843455 0.0 17 0.0 0.0 0.0 4.170870490049328 0.0 18 0.0 0.0 0.0 4.4468615546480095 0.0 19 0.0 0.0 0.0 4.551311211692262 0.0 20 0.0 0.0 0.0 4.658048087503907 0.0 21 0.0 0.0 0.0 4.7868947447336785 0.0 22 2.5413541859915475E-4 0.0 0.0 4.901001547684699 0.0 23 2.5413541859915475E-4 0.0 0.0 5.03010234033307 0.0 24 2.5413541859915475E-4 0.0 0.0 5.1376016224005125 0.0 25 2.5413541859915475E-4 0.0 0.0 5.217908414677845 0.0 26 2.5413541859915475E-4 0.0 0.0 5.310667842466537 0.0 27 2.5413541859915475E-4 0.0 0.0 5.385891926371887 0.0 28 2.5413541859915475E-4 0.0 0.0 5.469502479091008 0.0 29 2.5413541859915475E-4 0.0 0.0 5.550571677624139 0.0 30 5.082708371983095E-4 0.0 0.0 5.674081491063328 0.0 31 5.082708371983095E-4 0.0 0.0 5.785646939828357 0.0 32 5.082708371983095E-4 0.0 0.0 5.876373284268255 0.0 33 7.624062557974642E-4 0.0 0.0 5.957950753638584 0.0 34 7.624062557974642E-4 0.0 0.0 6.064941764868828 0.0 35 7.624062557974642E-4 0.0 0.0 6.207257599284355 0.0 36 7.624062557974642E-4 0.0 0.0 6.306370412538025 0.0 37 7.624062557974642E-4 0.0 0.0 6.404212548698699 0.0 38 7.624062557974642E-4 0.0 0.0 6.495955434812995 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGCGAC 110 0.0 44.000004 9 TCACGAC 35 1.4428406E-7 44.0 25 GTGCATG 40 8.289135E-9 44.0 1 AAATCGT 20 7.850162E-4 44.0 10 CGTATGA 20 7.850162E-4 44.0 15 GTATTAG 30 2.5234567E-6 44.0 1 GGCACGA 20 7.850162E-4 44.0 33 ATAATGC 20 7.850162E-4 44.0 35 GACGTAG 20 7.850162E-4 44.0 1 GCAAATG 20 7.850162E-4 44.0 1 GAATCAT 20 7.850162E-4 44.0 27 CCGTGAC 20 7.850162E-4 44.0 31 GTTAGAG 45 4.783942E-10 44.0 1 AGGGTCC 35 1.4428406E-7 44.0 6 TACGGGC 25 4.437486E-5 44.0 4 CGACACC 25 4.437486E-5 44.0 19 ACGGGTA 30 2.5234567E-6 44.0 5 TCGATAG 30 2.5234567E-6 44.0 1 ATCGTAT 20 7.850162E-4 44.0 13 ATCGTAG 35 1.4428406E-7 44.0 1 >>END_MODULE