##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546050_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 335058 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.01662697204663 28.0 25.0 30.0 16.0 33.0 2 26.08625073867808 30.0 25.0 31.0 10.0 33.0 3 26.34912462916868 30.0 25.0 31.0 16.0 33.0 4 27.873529359096036 32.0 19.0 35.0 10.0 35.0 5 31.17873323424601 33.0 30.0 35.0 19.0 37.0 6 29.777560899903897 33.0 28.0 35.0 17.0 36.0 7 29.723719475434105 32.0 28.0 35.0 17.0 35.0 8 32.3990891129297 33.0 32.0 35.0 28.0 35.0 9 26.947050958341542 30.0 23.0 34.0 10.0 35.0 10 31.752398092270592 34.0 30.0 37.0 17.0 38.0 11 33.659954395955324 35.0 32.0 37.0 26.0 39.0 12 32.94209957678969 35.0 31.0 37.0 23.0 39.0 13 32.349775262790324 35.0 30.0 37.0 21.0 39.0 14 32.14491819326803 35.0 29.0 38.0 20.0 40.0 15 31.478063499453825 33.0 27.0 38.0 17.0 40.0 16 30.22884097678611 33.0 26.0 37.0 17.0 40.0 17 30.08500617803485 32.0 25.0 37.0 17.0 40.0 18 31.072474019423503 33.0 27.0 37.0 17.0 39.0 19 30.581538121758022 34.0 27.0 37.0 18.0 39.0 20 31.270120397065583 34.0 29.0 36.0 18.0 39.0 21 32.12105068376221 34.0 30.0 36.0 23.0 39.0 22 32.52071880092402 34.0 30.0 37.0 23.0 39.0 23 33.899041360003345 35.0 33.0 38.0 28.0 39.0 24 33.59709960663527 35.0 33.0 38.0 26.0 40.0 25 32.381820460935124 34.0 31.0 37.0 23.0 39.0 26 26.0807501984731 33.0 19.0 35.0 0.0 38.0 27 29.19393955673346 33.0 23.0 36.0 11.0 39.0 28 30.73195088611524 33.0 27.0 36.0 18.0 39.0 29 32.045875639441526 34.0 30.0 36.0 23.0 39.0 30 31.718368163123998 34.0 30.0 37.0 21.0 39.0 31 30.57710605328033 33.0 28.0 35.0 18.0 38.0 32 30.737290260193756 34.0 29.0 36.0 18.0 38.0 33 30.438688227112916 33.0 29.0 36.0 16.0 38.0 34 30.47407314554495 34.0 29.0 36.0 15.0 39.0 35 29.698168675274133 33.0 27.0 36.0 10.0 39.0 36 29.328883357508253 33.0 25.0 36.0 10.0 39.0 37 29.3235827826824 33.0 25.0 36.0 10.0 39.0 38 29.14451527795188 33.0 25.0 36.0 10.0 38.0 39 29.04436246858753 33.0 24.0 36.0 10.0 38.0 40 29.033379295524952 33.0 25.0 35.0 10.0 38.0 41 28.415653409260486 32.0 23.0 35.0 9.0 38.0 42 28.62276978911114 33.0 23.0 35.0 8.0 38.0 43 28.157157865205427 32.0 23.0 35.0 8.0 38.0 44 27.9003724728256 32.0 23.0 35.0 8.0 38.0 45 27.384751296790405 31.0 23.0 34.0 8.0 37.0 46 26.96040685493258 31.0 23.0 34.0 7.0 37.0 47 27.177237970739395 31.0 23.0 34.0 8.0 37.0 48 27.409782783876224 31.0 23.0 34.0 8.0 37.0 49 27.223531448286565 31.0 23.0 34.0 8.0 37.0 50 28.841872153477905 33.0 24.0 35.0 8.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 3.0 11 4.0 12 16.0 13 65.0 14 125.0 15 317.0 16 606.0 17 1135.0 18 1876.0 19 2816.0 20 4184.0 21 5756.0 22 7854.0 23 9936.0 24 12764.0 25 15896.0 26 18344.0 27 19796.0 28 22022.0 29 25268.0 30 29831.0 31 33839.0 32 34881.0 33 32441.0 34 25382.0 35 18656.0 36 9189.0 37 2005.0 38 50.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 24.04867217019143 21.97709053357926 27.495538085943327 26.47869921028598 2 37.77913077735795 17.79602337505745 31.19698679034675 13.22785905723785 3 28.473577708933977 14.771770857582867 43.00837466946022 13.746276764022946 4 26.353347778593555 23.12883142620084 36.98374609769055 13.534074697515058 5 19.12295781625868 28.746664756549613 39.015334658477045 13.115042768714671 6 17.077640289143968 34.60535190922169 37.2998107790293 11.01719702260504 7 75.69256666010064 3.850975055065093 18.796745638068632 1.6597126467656345 8 78.25958490768762 2.3237767789457346 17.49995523163154 1.9166830817351026 9 66.05990604611739 2.770266640402557 17.712754209718913 13.457073103761138 10 52.28318679154057 16.501322159148565 22.791576383790268 8.423914665520597 11 47.887828375982664 14.621946051131445 27.655808845035786 9.834416727850105 12 41.06721821296611 17.979275229960187 30.768702732064302 10.184803825009402 13 18.163720908021894 39.871305863462446 31.234890675644216 10.730082552871444 14 11.3986235218977 39.798781106554685 35.94362767043318 12.858967701114436 15 9.325848062126557 17.21433304084666 57.84819344710468 15.611625449922103 16 10.351043699896733 12.036423544580341 55.52113365447177 22.091399101051163 17 11.739161577995452 14.505846748921083 38.05132245760435 35.70366921547911 18 17.926448555175522 18.819129822299423 44.52482853714879 18.729593085376266 19 25.988933259316298 19.98489813703896 34.561777363919084 19.46439123972566 20 28.381951781482613 18.03807102053973 34.195870565693106 19.38410663228456 21 17.53487455903157 25.496182750449176 36.92196574921357 20.046976941305683 22 19.02983960985859 20.417659032167563 33.688197267338786 26.864304090635056 23 14.999791080947178 26.367076744921775 34.30480692894962 24.328325245181432 24 15.52716246142459 18.420094431411872 50.6279509816211 15.424792125542444 25 13.58361835861254 19.969378435972278 46.56417694846862 19.882826256946558 26 11.406084916641298 42.05182386333112 29.890347342848106 16.651743877179474 27 13.795820425120429 31.37247879471614 37.26698064215748 17.564720138005956 28 11.702451515856955 24.35458935467889 48.827068746306615 15.115890383157543 29 11.846008750723755 20.21261990461353 47.805454578013354 20.135916766649355 30 15.589241265691314 27.026664040255717 40.174536945842206 17.209557748210756 31 27.27796381522005 23.221352721021436 32.23979131971181 17.260892144046704 32 28.142590238108028 22.019769711512634 33.55210142721559 16.28553862316375 33 25.3296444197721 23.72514609410908 32.016247933193654 18.928961552925166 34 16.77590148571292 24.192826316637717 33.883088898041535 25.14818329960783 35 18.172376125924465 22.541470431984912 36.82735526386477 22.45879817822586 36 28.51953990055453 22.013800595717754 30.523670528684587 18.942988975043125 37 17.899587534098576 30.347880068525452 32.31261453240931 19.439917864966663 38 18.51530182834017 31.246231995654483 28.197207647631156 22.04125852837419 39 19.079681726745818 28.872613099821525 30.886592769013127 21.161112404419534 40 22.106918802117843 23.497722782324253 29.236430707519297 25.158927708038608 41 15.953954240758318 21.36794226671203 30.925690477469576 31.75241301506008 42 19.93714521067994 23.014522858728938 26.32678521330635 30.72154671728477 43 20.682389317670374 23.732309033062933 28.84903509243176 26.736266556834938 44 16.951393490082314 28.533865778462236 30.86749159846952 23.64724913298593 45 14.692083161721254 36.48114654776188 26.2100889995165 22.616681291000365 46 20.813709865157673 30.186117030484272 28.537447247939163 20.46272585641889 47 19.860740528505513 24.41845889368408 30.165523580991948 25.55527699681846 48 21.053668320111743 20.89817285365519 34.25496481206239 23.79319401417068 49 19.282034752192157 21.23900936554268 35.673226724925236 23.805729157339922 50 17.37967754836476 31.27070537041348 30.09001426618675 21.25960281503501 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 121.0 1 214.0 2 307.0 3 3338.0 4 6369.0 5 5052.5 6 3736.0 7 3937.5 8 4139.0 9 4543.5 10 4948.0 11 5238.5 12 5529.0 13 5539.0 14 5549.0 15 5392.5 16 5236.0 17 4890.5 18 4545.0 19 4231.0 20 3917.0 21 3663.5 22 3410.0 23 3102.0 24 2794.0 25 2667.5 26 2541.0 27 2535.5 28 2530.0 29 2597.5 30 2665.0 31 3480.5 32 4296.0 33 4882.5 34 5469.0 35 5992.5 36 6516.0 37 6667.0 38 6818.0 39 9478.0 40 12138.0 41 18511.0 42 24884.0 43 30377.5 44 35871.0 45 35412.5 46 34954.0 47 32018.5 48 29083.0 49 26985.0 50 24887.0 51 23257.0 52 21627.0 53 19149.5 54 16672.0 55 14505.5 56 12339.0 57 11099.5 58 9860.0 59 9162.5 60 8465.0 61 7691.5 62 6918.0 63 5998.5 64 5079.0 65 4282.5 66 3486.0 67 2996.0 68 2506.0 69 2129.5 70 1753.0 71 1543.5 72 1334.0 73 1023.5 74 713.0 75 593.0 76 473.0 77 361.0 78 249.0 79 202.0 80 155.0 81 116.0 82 77.0 83 63.0 84 49.0 85 44.0 86 39.0 87 22.5 88 6.0 89 4.0 90 2.0 91 1.0 92 0.0 93 2.0 94 4.0 95 2.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 335058.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.81066879407623 #Duplication Level Percentage of deduplicated Percentage of total 1 84.68175384918865 39.6400953233586 2 5.884880709822957 5.509504036003412 3 2.308456199027705 3.2418113567495404 4 1.2738680093415553 2.38522453890627 5 0.7817567011538518 1.8297277007631292 6 0.5734849098509669 1.6107127304060567 7 0.4593301078918816 1.5051084683371918 8 0.3192411228019046 1.1955112371943177 9 0.30894760056665416 1.301583942436518 >10 3.1355105061326696 31.592048667443578 >50 0.2482209586413012 7.315746126303766 >100 0.02318547415880286 1.448593067508792 >500 6.819257105530253E-4 0.22185372012309615 >1k 6.819257105530253E-4 1.20247908446576 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3767 1.1242829599651405 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTT 695 0.20742677387198633 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.045962191620555246 0.0 2 0.0 0.0 0.0 0.18623641280017192 0.0 3 0.0 0.0 0.0 0.24712139390792043 0.0 4 0.0 0.0 0.0 0.3548639340054558 0.0 5 0.0 0.0 0.0 0.6458583290057244 0.0 6 0.0 0.0 0.0 0.8234395239033242 0.0 7 0.0 0.0 0.0 0.9562523503393442 0.0 8 0.0 0.0 0.0 1.3388726727909794 0.0 9 0.0 0.0 0.0 1.5537608414065625 0.0 10 0.0 0.0 0.0 1.9086247754120182 0.0 11 0.0 0.0 0.0 2.110380889278871 0.0 12 0.0 0.0 0.0 2.3685451474073145 0.0 13 0.0 0.0 0.0 2.460767986438169 0.0 14 0.0 0.0 0.0 2.4840475380381903 0.0 15 0.0 0.0 0.0 2.5264282601818193 0.0 16 0.0 0.0 0.0 2.615964997104979 0.0 17 0.0 0.0 0.0 2.7317658435255985 0.0 18 0.0 0.0 0.0 2.899497997361651 0.0 19 0.0 0.0 0.0 2.9687397405822273 0.0 20 0.0 0.0 0.0 3.0335046469566462 0.0 21 0.0 0.0 0.0 3.1084170501823567 0.0 22 0.0 0.0 0.0 3.17586805866447 0.0 23 0.0 0.0 0.0 3.249288182941461 0.0 24 0.0 0.0 0.0 3.3071886061517706 0.0 25 0.0 0.0 0.0 3.3513600630338627 0.0 26 0.0 0.0 0.0 3.4053805609775023 0.0 27 0.0 0.0 0.0 3.465967086295507 0.0 28 0.0 0.0 0.0 3.528344346351975 0.0 29 0.0 0.0 0.0 3.5963922664135763 0.0 30 0.0 0.0 0.0 3.6835413570187847 0.0 31 0.0 0.0 0.0 3.7635275086701405 0.0 32 0.0 0.0 0.0 3.836649177157388 0.0 33 0.0 0.0 0.0 3.9052940087984767 0.0 34 0.0 0.0 0.0 3.9873693509780397 0.0 35 0.0 0.0 0.0 4.084069026855052 0.0 36 0.0 0.0 0.0 4.157190695342299 0.0 37 0.0 0.0 0.0 4.2341922890962165 0.0 38 0.0 0.0 0.0 4.30015101862961 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTAATT 20 7.8484876E-4 44.000004 38 GATACAA 20 7.8484876E-4 44.000004 9 GTCGATG 20 7.8484876E-4 44.000004 1 CCCTATG 20 7.8484876E-4 44.000004 33 CGTGCGG 40 8.281859E-9 44.000004 2 CGTGCCC 20 7.8484876E-4 44.000004 24 TAGACAG 20 7.8484876E-4 44.000004 1 GCGAAAG 20 7.8484876E-4 44.000004 1 GGGTATA 40 8.281859E-9 44.000004 7 CATGAAC 20 7.8484876E-4 44.000004 32 TAGCGAG 20 7.8484876E-4 44.000004 1 GTAGGTT 20 7.8484876E-4 44.000004 17 CTAAGCG 20 7.8484876E-4 44.000004 1 TCGATAC 20 7.8484876E-4 44.000004 25 TCTAGAG 20 7.8484876E-4 44.000004 1 CGTTATG 20 7.8484876E-4 44.000004 41 AATATAG 20 7.8484876E-4 44.000004 1 GTTAACG 20 7.8484876E-4 44.000004 1 TACGATG 20 7.8484876E-4 44.000004 1 ACGTGCC 20 7.8484876E-4 44.000004 23 >>END_MODULE