##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546049_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 685663 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.142914230460153 31.0 28.0 33.0 25.0 33.0 2 28.800060671204367 31.0 28.0 33.0 16.0 33.0 3 28.263372823092393 31.0 27.0 33.0 16.0 34.0 4 32.13720296997213 35.0 32.0 35.0 25.0 37.0 5 33.68592588487347 35.0 33.0 35.0 28.0 37.0 6 33.49134195661717 35.0 33.0 37.0 28.0 37.0 7 34.365449207555315 35.0 35.0 37.0 31.0 37.0 8 34.85258939158158 35.0 35.0 37.0 32.0 37.0 9 36.659953942388604 39.0 37.0 39.0 32.0 39.0 10 36.55163104907221 39.0 35.0 39.0 32.0 39.0 11 36.4533189044764 39.0 35.0 39.0 32.0 39.0 12 34.946469329685286 35.0 33.0 39.0 30.0 39.0 13 34.274366561999116 37.0 33.0 39.0 25.0 39.0 14 35.03272744774036 37.0 33.0 40.0 25.0 41.0 15 35.92842402171329 37.0 33.0 40.0 30.0 41.0 16 35.65958787334303 36.0 34.0 40.0 30.0 41.0 17 35.142615249765555 35.0 33.0 40.0 29.0 41.0 18 34.87393369629103 36.0 33.0 39.0 29.0 40.0 19 34.27550998085065 36.0 32.0 38.0 27.0 40.0 20 34.71288665131413 35.0 34.0 38.0 29.0 40.0 21 34.8336369324289 35.0 34.0 39.0 30.0 40.0 22 35.19477790109718 35.0 34.0 39.0 30.0 40.0 23 35.607315838830445 35.0 34.0 39.0 31.0 41.0 24 35.29168994097684 35.0 34.0 39.0 31.0 41.0 25 34.89723231383347 35.0 34.0 39.0 30.0 40.0 26 34.97521814652387 35.0 34.0 39.0 30.0 40.0 27 35.23777278342276 35.0 34.0 39.0 31.0 41.0 28 35.200546040839306 35.0 34.0 39.0 31.0 41.0 29 35.37994612513727 35.0 35.0 40.0 31.0 41.0 30 34.994282905742324 35.0 34.0 39.0 30.0 41.0 31 34.26134704658119 35.0 34.0 38.0 27.0 40.0 32 34.072475837255325 35.0 34.0 39.0 25.0 40.0 33 33.69999693727093 35.0 33.0 39.0 23.0 40.0 34 33.38827091442881 35.0 33.0 39.0 21.0 41.0 35 33.12777705665903 35.0 33.0 39.0 18.0 41.0 36 32.69579516468003 35.0 33.0 39.0 17.0 40.0 37 32.59274599912785 35.0 33.0 39.0 16.0 40.0 38 32.4826102618925 35.0 32.0 39.0 16.0 40.0 39 32.35218321536965 35.0 32.0 38.0 15.0 40.0 40 32.16157937645753 35.0 32.0 38.0 15.0 40.0 41 31.92644199847447 35.0 31.0 38.0 14.0 40.0 42 32.06721231858799 35.0 32.0 38.0 13.0 40.0 43 31.83738367098706 35.0 31.0 38.0 12.0 40.0 44 31.6188769118357 35.0 31.0 38.0 10.0 40.0 45 31.539380132805768 35.0 31.0 38.0 10.0 40.0 46 31.428051389676853 35.0 31.0 38.0 10.0 40.0 47 31.42481948129037 35.0 31.0 38.0 10.0 40.0 48 31.505287582967142 35.0 31.0 38.0 10.0 40.0 49 31.561593669193176 35.0 31.0 37.0 10.0 40.0 50 31.60822444845354 35.0 31.0 38.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 2.0 12 3.0 13 11.0 14 30.0 15 72.0 16 193.0 17 420.0 18 857.0 19 1423.0 20 2286.0 21 3452.0 22 4950.0 23 6857.0 24 10151.0 25 15258.0 26 20840.0 27 23519.0 28 22347.0 29 21575.0 30 23280.0 31 29180.0 32 40281.0 33 66232.0 34 113403.0 35 65151.0 36 51850.0 37 69821.0 38 75488.0 39 16730.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.01613328996898 22.310231119369135 28.04322239934195 23.630413191319935 2 37.70394494088204 20.3826077825404 30.114064781095085 11.799382495482474 3 27.002477893659133 18.53184436085949 41.87377764295288 12.591900102528502 4 24.600423239988157 23.921226608406755 37.13004785149556 14.348302300109527 5 18.969377084661122 29.427284248967787 38.73666801329516 12.866670653075928 6 18.580118804718936 35.36897863819398 36.173747161506455 9.877155395580628 7 75.8067738816299 5.057732442905626 16.872574427962427 2.2629192475020528 8 78.53231106243155 2.8938414352240094 16.104266964966754 2.4695805373776913 9 75.39345130187863 4.022092485667157 17.436699953183997 3.147756259270225 10 54.55508026537819 15.641211498943358 20.92514836005443 8.878559875624031 11 49.66244350358704 15.38598407672574 24.950595263270735 10.000977156416491 12 43.58628072391247 18.04953745498882 28.373559605812183 9.990622215286518 13 19.056154408215114 41.71101546969867 28.815467656851833 10.41736246523438 14 12.187036488770723 43.51598379962168 33.4731493459615 10.823830365646097 15 10.70963432473387 19.141764977838967 58.75145661935966 11.397144078067505 16 11.782172875012943 13.504009987413642 57.69773197620406 17.01608516136936 17 12.589129061944423 13.73575648678724 36.071364504136874 37.60374994713146 18 19.469331143725125 19.033986083542498 42.458029673469326 19.03865309926305 19 26.97462164357709 20.434236643948996 32.918649540663566 19.672492171810347 20 29.9476565018092 18.62576805223557 32.10221347804971 19.324361967905514 21 19.40793071815163 25.680254002330592 35.045204422580774 19.866610856937008 22 20.403025976317814 20.549891127273895 32.38208857704149 26.6649943193668 23 16.599991541034008 26.98833100225621 30.60337221054658 25.808305246163204 24 17.444138009488626 19.873028003552765 47.6712320775658 15.011601909392807 25 14.706933289385601 20.065688246266753 45.305200951487826 19.922177512859815 26 13.04387140621559 32.56628985376198 34.94194669976359 19.447892040258843 27 14.485833419624509 32.930900456930004 36.01390187307759 16.569364250367894 28 12.444889107331154 25.65239775224855 47.57657916498338 14.326133975436914 29 12.825105044314771 20.366856604483544 46.599714436975596 20.208323914226085 30 16.54705008145401 27.632379171692218 38.81031935513511 17.010251391718672 31 28.970645929560146 23.27615752928188 30.55013906248405 17.203057478673927 32 29.649842561141554 22.669153797127745 32.25097460414227 15.430029037588437 33 28.09441372802674 24.9600751389531 29.63102865401808 17.314482479002073 34 18.003742363230916 26.289445398103734 31.327634712679554 24.3791775259858 35 18.441712619756352 24.524584234529208 35.67029284065204 21.3634103050624 36 31.433517631839546 22.152865183041815 28.963791250220588 17.449825934898048 37 19.7216416811174 30.708671752741505 31.73570689974521 17.833979666395884 38 19.78172950851949 31.62121917035045 26.6200742930565 21.97697702807356 39 19.69553556193057 29.508519491353624 30.67921121600553 20.116733730710276 40 23.421564237825287 24.153848173227956 27.99290613610476 24.431681452841993 41 16.346514249711593 21.95772558822629 30.899290176077756 30.79646998598437 42 22.238184064183134 23.186463320902543 26.36805544414676 28.207297170767564 43 22.58412660446896 23.58826420559371 27.872292948576778 25.955316241360553 44 18.81171945985127 28.74298306894203 30.66404341491374 21.78125405629296 45 15.77145040639498 37.98557017076902 24.945636559067648 21.297342863768353 46 22.08461007812876 30.826513899685416 28.082892032966633 19.005983989219192 47 20.86185195934446 25.950357537157466 28.80073738848385 24.387053115014226 48 22.819810898356774 21.700602190872193 33.142957983732536 22.3366289270385 49 20.94221213628269 21.015134256916298 35.22998907626633 22.81266453053468 50 18.634518706711606 30.66141821857093 29.69490843169312 21.009154643024345 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 289.0 1 463.0 2 637.0 3 8172.0 4 15707.0 5 11460.5 6 7214.0 7 7958.0 8 8702.0 9 9614.0 10 10526.0 11 10560.5 12 10595.0 13 10048.5 14 9502.0 15 8741.5 16 7981.0 17 7195.0 18 6409.0 19 5929.5 20 5450.0 21 4919.0 22 4388.0 23 4041.0 24 3694.0 25 3573.5 26 3453.0 27 3585.5 28 3718.0 29 4220.5 30 4723.0 31 5407.5 32 6092.0 33 7129.0 34 8166.0 35 9725.0 36 11284.0 37 13799.5 38 16315.0 39 22028.5 40 27742.0 41 42478.5 42 57215.0 43 66659.0 44 76103.0 45 75542.5 46 74982.0 47 70439.0 48 65896.0 49 60459.0 50 55022.0 51 49662.5 52 44303.0 53 39630.5 54 34958.0 55 30301.5 56 25645.0 57 22507.5 58 19370.0 59 17626.5 60 15883.0 61 14911.5 62 13940.0 63 12274.5 64 10609.0 65 8765.5 66 6922.0 67 5824.0 68 4726.0 69 3919.0 70 3112.0 71 2512.0 72 1912.0 73 1458.0 74 1004.0 75 884.5 76 765.0 77 572.5 78 380.0 79 256.0 80 132.0 81 124.5 82 117.0 83 75.5 84 34.0 85 27.0 86 20.0 87 14.0 88 8.0 89 9.5 90 11.0 91 6.5 92 2.0 93 1.5 94 1.0 95 2.5 96 4.0 97 2.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 685663.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.669066270298067 #Duplication Level Percentage of deduplicated Percentage of total 1 78.76123336357715 20.217273187400732 2 7.332683799725452 3.7644629278858734 3 3.022993133227886 2.3279223321444777 4 1.8647845896848196 1.9146911684980092 5 1.26839062496439 1.6279201504417857 6 0.8483264467725876 1.3065448668631225 7 0.6345541777813758 1.140188926909525 8 0.48423382119873215 0.9943864037335939 9 0.34748300730936177 0.8027607908183829 >10 3.6421539560420753 21.908550335486563 >50 1.1999874601903053 21.98197106974701 >100 0.5920392677643456 20.25472348394932 >500 0.0 0.0 >1k 5.681758807719247E-4 0.19164091258449437 >5k 0.0 0.0 >10k+ 5.681758807719247E-4 1.5669634435371442 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10744 1.5669505281749196 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1314 0.19163933302511585 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.4584424126721143E-4 0.0 0.0 0.038648723935811036 0.0 2 1.4584424126721143E-4 0.0 0.0 0.1454067085434098 0.0 3 1.4584424126721143E-4 0.0 0.0 0.19411868512665842 0.0 4 1.4584424126721143E-4 0.0 0.0 0.2930010807058278 0.0 5 1.4584424126721143E-4 0.0 0.0 0.47603560349617813 0.0 6 1.4584424126721143E-4 0.0 0.0 0.6632996092832777 0.0 7 1.4584424126721143E-4 0.0 0.0 0.7951428033888368 0.0 8 1.4584424126721143E-4 0.0 0.0 1.178129780956534 0.0 9 2.9168848253442286E-4 0.0 0.0 1.3547471571311271 0.0 10 2.9168848253442286E-4 0.0 0.0 1.6283509537484158 0.0 11 2.9168848253442286E-4 0.0 0.0 1.8427419884112166 0.0 12 2.9168848253442286E-4 0.0 0.0 2.049403278286855 0.0 13 4.375327238016343E-4 0.0 0.0 2.125679816469607 0.0 14 4.375327238016343E-4 0.0 0.0 2.1551403532055833 0.0 15 4.375327238016343E-4 0.0 0.0 2.19349738865886 0.0 16 4.375327238016343E-4 0.0 0.0 2.3005470617489934 0.0 17 4.375327238016343E-4 0.0 0.0 2.418097520210366 0.0 18 4.375327238016343E-4 0.0 0.0 2.650719085031568 0.0 19 4.375327238016343E-4 0.0 0.0 2.7194117226684247 0.0 20 5.833769650688457E-4 0.0 0.0 2.806626578946217 0.0 21 5.833769650688457E-4 0.0 0.0 2.9021545569762406 0.0 22 7.292212063360572E-4 0.0 0.0 2.994328117457118 0.0 23 8.750654476032686E-4 0.0 0.0 3.1054614293027334 0.0 24 8.750654476032686E-4 0.0 0.0 3.188009269859975 0.0 25 8.750654476032686E-4 0.0 0.0 3.247222031814463 0.0 26 8.750654476032686E-4 0.0 0.0 3.312268563419639 0.0 27 8.750654476032686E-4 0.0 0.0 3.3784818489549533 0.0 28 0.0010209096888704802 0.0 0.0 3.442799159353793 0.0 29 0.0010209096888704802 0.0 0.0 3.5176172551238727 0.0 30 0.0010209096888704802 0.0 0.0 3.6221875761124633 0.0 31 0.0010209096888704802 0.0 0.0 3.721945037139236 0.0 32 0.0010209096888704802 0.0 0.0 3.8079931394868907 0.0 33 0.0011667539301376915 0.0 0.0 3.8902492915615983 0.0 34 0.0011667539301376915 0.0 0.0 3.978339213286994 0.0 35 0.0011667539301376915 0.0 0.0 4.099244089297512 0.0 36 0.0011667539301376915 0.0 0.0 4.183833749232495 0.0 37 0.001312598171404903 0.0 0.0 4.2745488673007 0.0 38 0.001312598171404903 0.0 0.0 4.366139050816509 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTCACCG 20 7.854256E-4 44.000004 31 GGTACCC 40 8.303687E-9 44.000004 36 ATCTACG 20 7.854256E-4 44.000004 1 CGTTGAT 20 7.854256E-4 44.000004 25 GTCTAAT 20 7.854256E-4 44.000004 33 CCCACTC 20 7.854256E-4 44.000004 43 TATGACT 20 7.854256E-4 44.000004 13 ACGATAT 20 7.854256E-4 44.000004 34 TACGCGG 20 7.854256E-4 44.000004 2 TACGATA 20 7.854256E-4 44.000004 33 CTACGAT 20 7.854256E-4 44.000004 32 TCCACGT 20 7.854256E-4 44.000004 14 GCGATAC 40 8.303687E-9 44.000004 9 GCTAGAT 20 7.854256E-4 44.000004 18 CGGTCTA 65 0.0 44.000004 31 CCAACCG 20 7.854256E-4 44.000004 2 ATACGCA 20 7.854256E-4 44.000004 42 CACAACG 20 7.854256E-4 44.000004 12 GCCACTA 20 7.854256E-4 44.000004 9 AATACGC 20 7.854256E-4 44.000004 41 >>END_MODULE