##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546048_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 689956 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.108425754685808 31.0 28.0 33.0 25.0 33.0 2 28.7594324855498 31.0 28.0 33.0 16.0 33.0 3 28.248246264979215 31.0 27.0 33.0 16.0 34.0 4 32.12086133028773 35.0 32.0 35.0 25.0 37.0 5 33.71416293212901 35.0 33.0 35.0 30.0 37.0 6 33.57553090341993 35.0 33.0 37.0 28.0 37.0 7 34.42569671109462 35.0 35.0 37.0 32.0 37.0 8 34.88402303915032 35.0 35.0 37.0 32.0 37.0 9 36.765835792427346 39.0 37.0 39.0 32.0 39.0 10 36.571595869881556 39.0 35.0 39.0 32.0 39.0 11 36.504368394506315 39.0 35.0 39.0 32.0 39.0 12 34.90828545588414 35.0 33.0 39.0 30.0 39.0 13 34.318810184997304 37.0 33.0 39.0 25.0 39.0 14 35.069794305723846 37.0 33.0 40.0 25.0 41.0 15 35.9892326467195 37.0 34.0 40.0 30.0 41.0 16 35.71177292465027 36.0 34.0 40.0 31.0 41.0 17 35.19489793552052 35.0 33.0 40.0 29.0 41.0 18 34.95007797598687 36.0 33.0 39.0 29.0 40.0 19 34.33853318182609 36.0 32.0 38.0 27.0 40.0 20 34.68340589834714 35.0 34.0 38.0 29.0 40.0 21 34.77107380760512 35.0 34.0 38.0 29.0 40.0 22 35.17721419916632 35.0 34.0 39.0 30.0 40.0 23 35.62821397306495 35.0 34.0 39.0 31.0 41.0 24 35.184320449419964 35.0 34.0 39.0 31.0 40.0 25 34.79643774385613 35.0 34.0 39.0 30.0 40.0 26 34.929901327041144 35.0 34.0 39.0 30.0 40.0 27 35.246079460139484 35.0 34.0 39.0 31.0 41.0 28 35.2136136217382 35.0 34.0 39.0 31.0 41.0 29 35.38498976746343 35.0 35.0 40.0 31.0 41.0 30 35.02651763300848 35.0 34.0 39.0 30.0 41.0 31 34.311141580042786 35.0 34.0 38.0 28.0 40.0 32 34.14807900793674 35.0 34.0 39.0 26.0 40.0 33 33.78990399387787 35.0 33.0 39.0 23.0 40.0 34 33.41617146600653 35.0 33.0 39.0 21.0 41.0 35 33.17226460817791 35.0 33.0 39.0 18.0 41.0 36 32.724843323342355 35.0 33.0 39.0 17.0 40.0 37 32.61867858240235 35.0 33.0 39.0 16.0 40.0 38 32.53021207149441 35.0 32.0 39.0 17.0 40.0 39 32.3665451130217 35.0 32.0 38.0 15.0 40.0 40 32.152008244003966 35.0 32.0 38.0 15.0 40.0 41 31.8988674640122 35.0 31.0 38.0 14.0 40.0 42 32.047510276017604 35.0 32.0 38.0 13.0 40.0 43 31.83207769770826 35.0 31.0 38.0 12.0 40.0 44 31.611544794160785 35.0 31.0 38.0 10.0 40.0 45 31.525830632678026 35.0 31.0 38.0 10.0 40.0 46 31.39725286829885 35.0 31.0 38.0 10.0 40.0 47 31.39434108841723 35.0 31.0 38.0 10.0 40.0 48 31.473644696183523 35.0 31.0 38.0 10.0 40.0 49 31.58494309782073 35.0 31.0 37.0 10.0 40.0 50 31.652934390019073 35.0 31.0 38.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 2.0 12 6.0 13 15.0 14 17.0 15 46.0 16 186.0 17 431.0 18 859.0 19 1367.0 20 2257.0 21 3417.0 22 4821.0 23 6792.0 24 10091.0 25 15037.0 26 20848.0 27 23773.0 28 22204.0 29 21636.0 30 23702.0 31 29042.0 32 40422.0 33 66658.0 34 115294.0 35 65343.0 36 53094.0 37 71992.0 38 76053.0 39 14550.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.151377769017152 22.16242774901588 27.94279635223116 23.74339812973581 2 37.884879615511714 20.263611012876183 30.02075494669225 11.83075442491985 3 26.955631953341953 18.444509504953942 41.91557142774322 12.68428711396089 4 24.449819988521007 24.04501156595493 37.180052061290866 14.325116384233198 5 18.882943260149922 29.41245528700381 38.74145597690288 12.963145475943394 6 18.48567155006986 35.399938546805885 36.312025694392105 9.80236420873215 7 75.65569398628318 5.0503220495219985 17.017317046304402 2.276666917890416 8 78.38065036031283 2.9068520311440147 16.271762257303365 2.440735351239789 9 75.32349888978428 4.032865863910162 17.575758454162294 3.067876792143267 10 54.50738887697186 15.497365049365467 20.941915136617407 9.05333093704526 11 49.53011496385277 15.372864356567664 25.163198812677912 9.933821866901656 12 43.604229834946 17.720985106296634 28.41210164126408 10.262683417493289 13 19.045562325713526 41.581347216344234 28.94633860709958 10.426751850842662 14 12.308755920667405 43.453205711668566 33.4559015357501 10.782136831913919 15 10.744163395926696 19.119480082787888 58.78925612647763 11.347100394807786 16 11.780171489196412 13.529558406623032 57.78122083147331 16.909049272707243 17 12.580512380499625 13.680582529900457 36.12491231324896 37.613992776350955 18 19.526317620254044 18.94077303480222 42.532422357367714 19.00048698757602 19 27.04418832505261 20.42796931978271 32.9032575990353 19.624584756129376 20 29.941184655253377 18.34348857028564 32.205966757300466 19.509360017160514 21 19.40341123202059 25.595400286395076 35.20123022337656 19.79995825820777 22 20.413765515482147 20.510003536457397 32.49468082022622 26.58155012783424 23 16.5726510096296 26.865771150624095 30.6823913408971 25.8791864988492 24 17.479375496408466 19.82358295311585 47.635501394291815 15.061540156183872 25 14.673254526375596 20.043162172660285 45.320281293299864 19.963302007664257 26 12.996191061458992 32.39481937978654 35.124558667509234 19.48443089124524 27 14.45773353663132 32.75005942407921 36.1570882780931 16.635118761196367 28 12.45064902689447 25.665259813669277 47.662604571885744 14.22148658755051 29 12.879516954704359 20.296076851277473 46.651960414867034 20.172445779151136 30 16.582941520908577 27.497550568442048 38.94697632892532 16.972531581724052 31 28.926337331655933 23.263947266202482 30.647026766924267 17.162688635217318 32 29.550580036987867 22.607818469583567 32.477143470018376 15.364458023410188 33 27.911490008058486 24.943184782797744 29.822626370377243 17.322698838766527 34 18.11767706926239 26.272979726243413 31.44490373299167 24.16443947150253 35 18.30189171483399 24.47025607430039 35.785615314599774 21.442236896265847 36 31.29199543159274 22.13662900242914 29.097362730377007 17.474012835601112 37 19.696183524746505 30.544121654134464 32.02291160595748 17.736783215161548 38 19.79053736760025 31.447947405341793 26.7533002104482 22.008215016609757 39 19.631396784722504 29.463617969841554 30.744859092463866 20.160126152972076 40 23.358446045834807 24.204442022389834 27.998886885540525 24.438225046234834 41 16.302198980804572 21.985459942373136 31.033718092168193 30.67862298465409 42 22.305770223028716 23.159447848848334 26.451107027114773 28.08367490100818 43 22.561003890103137 23.670929740447217 27.95830458753892 25.80976178191073 44 18.88468250149285 28.79560435737931 30.600357124222416 21.719356016905426 45 15.79521012934158 37.899228356590854 25.135226014412517 21.17033549965505 46 22.117787221214105 30.79326797650865 28.21716167407777 18.87178312819948 47 20.876838523036252 26.063835954756538 28.802851196308172 24.256474325899045 48 22.895807848616435 21.72834209717721 33.10037161790027 22.275478436306084 49 20.94177019983883 21.053371519343262 35.16021311503922 22.844645165778687 50 18.574952605673406 30.664853990689263 29.69812567757944 21.062067726057894 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 321.0 1 490.0 2 659.0 3 8410.5 4 16162.0 5 11754.5 6 7347.0 7 8069.5 8 8792.0 9 9719.0 10 10646.0 11 10762.0 12 10878.0 13 10211.0 14 9544.0 15 8816.5 16 8089.0 17 7338.0 18 6587.0 19 5955.5 20 5324.0 21 4901.0 22 4478.0 23 4114.0 24 3750.0 25 3618.0 26 3486.0 27 3527.5 28 3569.0 29 4189.5 30 4810.0 31 5514.5 32 6219.0 33 7185.0 34 8151.0 35 9807.0 36 11463.0 37 13889.5 38 16316.0 39 21912.0 40 27508.0 41 42453.0 42 57398.0 43 66829.0 44 76260.0 45 75883.5 46 75507.0 47 70639.5 48 65772.0 49 60541.0 50 55310.0 51 49914.5 52 44519.0 53 39995.5 54 35472.0 55 30446.0 56 25420.0 57 22542.5 58 19665.0 59 17923.0 60 16181.0 61 15207.0 62 14233.0 63 12477.0 64 10721.0 65 8803.5 66 6886.0 67 5872.5 68 4859.0 69 4002.0 70 3145.0 71 2571.0 72 1997.0 73 1527.5 74 1058.0 75 910.0 76 762.0 77 575.5 78 389.0 79 259.0 80 129.0 81 118.5 82 108.0 83 71.5 84 35.0 85 26.0 86 17.0 87 11.5 88 6.0 89 3.0 90 0.0 91 1.0 92 2.0 93 2.0 94 2.0 95 3.0 96 4.0 97 2.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 689956.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.455636325936776 #Duplication Level Percentage of deduplicated Percentage of total 1 78.28968357237088 19.9291371309094 2 7.556691099380183 3.8472076090653062 3 3.1678722866709057 2.4192061456952496 4 1.8572730108189974 1.8911226528554415 5 1.2456641962720003 1.5854587382270184 6 0.8947731713145042 1.3666212265912285 7 0.6566287065000567 1.1700431087685004 8 0.5141396668786005 1.0470201904639949 9 0.3577801620401694 0.8196769520576355 >10 3.6505463260424817 21.924325804062406 >50 1.2076782198924767 21.971164919019273 >100 0.600127569317727 20.229832690079487 >500 0.0 0.0 >1k 5.71006250540178E-4 0.19157561583828336 >5k 0.0 0.0 >10k+ 5.71006250540178E-4 1.6076072163667785 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11060 1.6030007710636622 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1318 0.19102667416472935 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.033625332629906836 0.0 2 0.0 0.0 0.0 0.12942854326942588 0.0 3 0.0 0.0 0.0 0.17305451362115845 0.0 4 0.0 0.0 0.0 0.2698722817107178 0.0 5 0.0 0.0 0.0 0.44814451936065486 0.0 6 0.0 0.0 0.0 0.6385914464110755 0.0 7 0.0 0.0 0.0 0.7628022656517227 0.0 8 0.0 0.0 0.0 1.1490587805599197 0.0 9 0.0 0.0 0.0 1.3163158230379908 0.0 10 0.0 0.0 0.0 1.585753294412977 0.0 11 0.0 0.0 0.0 1.7877951637495724 0.0 12 0.0 0.0 0.0 1.9815756367072683 0.0 13 0.0 0.0 0.0 2.0531744053243974 0.0 14 0.0 0.0 0.0 2.080422519696908 0.0 15 0.0 0.0 0.0 2.1201351970270568 0.0 16 1.4493677857718463E-4 0.0 0.0 2.221735878809663 0.0 17 1.4493677857718463E-4 0.0 0.0 2.343337836035921 0.0 18 1.4493677857718463E-4 0.0 0.0 2.565380980816168 0.0 19 1.4493677857718463E-4 0.0 0.0 2.6295879737258607 0.0 20 1.4493677857718463E-4 0.0 0.0 2.7175645983222116 0.0 21 2.8987355715436925E-4 0.0 0.0 2.817281101983315 0.0 22 2.8987355715436925E-4 0.0 0.0 2.902938738122431 0.0 23 2.8987355715436925E-4 0.0 0.0 3.004249546347883 0.0 24 2.8987355715436925E-4 0.0 0.0 3.088892625036959 0.0 25 2.8987355715436925E-4 0.0 0.0 3.150200882375108 0.0 26 2.8987355715436925E-4 0.0 0.0 3.2126686339418744 0.0 27 2.8987355715436925E-4 0.0 0.0 3.2774553739658763 0.0 28 4.348103357315539E-4 0.0 0.0 3.337749073853985 0.0 29 4.348103357315539E-4 0.0 0.0 3.4090579689139595 0.0 30 4.348103357315539E-4 0.0 0.0 3.5106586506965662 0.0 31 4.348103357315539E-4 0.0 0.0 3.608346039457589 0.0 32 4.348103357315539E-4 0.0 0.0 3.686466963110691 0.0 33 4.348103357315539E-4 0.0 0.0 3.763863202870908 0.0 34 4.348103357315539E-4 0.0 0.0 3.8474917241099433 0.0 35 4.348103357315539E-4 0.0 0.0 3.9717025433505904 0.0 36 4.348103357315539E-4 0.0 0.0 4.05822980016117 0.0 37 4.348103357315539E-4 0.0 0.0 4.139974143278701 0.0 38 4.348103357315539E-4 0.0 0.0 4.234617859689603 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGAGTA 20 7.854291E-4 44.0 29 ACGTTAG 25 4.4409855E-5 44.0 1 CTATCGC 25 4.4409855E-5 44.0 20 GCGCGAT 20 7.854291E-4 44.0 18 ATAATCG 25 4.4409855E-5 44.0 16 AGCTTCA 25 4.4409855E-5 44.0 42 CGTTGAT 25 4.4409855E-5 44.0 25 ATTACCG 30 2.5262398E-6 44.0 1 ACACACG 25 4.4409855E-5 44.0 29 GTTAGCG 40 8.303687E-9 44.0 1 CGATTTA 25 4.4409855E-5 44.0 10 GTCTAGA 20 7.854291E-4 44.0 11 CGCGATC 20 7.854291E-4 44.0 19 GAATACC 20 7.854291E-4 44.0 41 ACGGGTA 25 4.4409855E-5 44.0 5 ATCACAC 20 7.854291E-4 44.0 26 TATGACT 25 4.4409855E-5 44.0 13 ATGTACG 25 4.4409855E-5 44.0 1 CCGTATG 25 4.4409855E-5 44.0 35 ACCTAGC 20 7.854291E-4 44.0 34 >>END_MODULE