##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546047_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 679440 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.00545302013423 31.0 28.0 33.0 23.0 33.0 2 28.64303691275168 31.0 28.0 33.0 16.0 33.0 3 28.131630460379135 31.0 26.0 33.0 16.0 34.0 4 32.017150888967386 35.0 32.0 35.0 25.0 37.0 5 33.65821117390792 35.0 33.0 35.0 28.0 37.0 6 33.50109207582715 35.0 33.0 37.0 28.0 37.0 7 34.34860178970917 35.0 35.0 37.0 31.0 37.0 8 34.85490992582127 35.0 35.0 37.0 32.0 37.0 9 36.7559740374426 39.0 37.0 39.0 32.0 39.0 10 36.61899505475097 39.0 35.0 39.0 32.0 39.0 11 36.50143058989756 39.0 35.0 39.0 32.0 39.0 12 35.055095372659835 35.0 34.0 39.0 30.0 39.0 13 34.38988873189685 37.0 33.0 39.0 25.0 39.0 14 35.11482985988461 37.0 33.0 40.0 25.0 41.0 15 35.95947250677028 37.0 34.0 40.0 30.0 41.0 16 35.657381078535266 36.0 34.0 40.0 30.0 41.0 17 35.147069645590484 35.0 33.0 39.0 29.0 41.0 18 34.87887377840575 36.0 33.0 39.0 29.0 40.0 19 34.24428058401036 36.0 32.0 38.0 27.0 40.0 20 34.77443041328153 35.0 34.0 38.0 29.0 40.0 21 34.803374838101966 35.0 34.0 39.0 29.0 40.0 22 35.16928352761097 35.0 34.0 39.0 30.0 40.0 23 35.607866772636285 35.0 34.0 39.0 31.0 41.0 24 35.18741610738255 35.0 34.0 39.0 31.0 41.0 25 34.813065171317554 35.0 34.0 39.0 30.0 40.0 26 34.93555869539621 35.0 34.0 39.0 30.0 40.0 27 35.24377134110444 35.0 34.0 39.0 31.0 41.0 28 35.223235311432944 35.0 34.0 39.0 31.0 41.0 29 35.39480896032026 35.0 35.0 40.0 31.0 41.0 30 35.02304103379254 35.0 34.0 39.0 30.0 41.0 31 34.270656717296596 35.0 34.0 38.0 27.0 40.0 32 34.11772047568586 35.0 34.0 39.0 26.0 40.0 33 33.782255975509244 35.0 33.0 39.0 23.0 41.0 34 33.40544124573178 35.0 33.0 39.0 21.0 41.0 35 33.13067379018015 35.0 33.0 39.0 18.0 41.0 36 32.7287427881785 35.0 33.0 39.0 17.0 40.0 37 32.63187183562934 35.0 33.0 39.0 16.0 40.0 38 32.53289032144119 35.0 32.0 39.0 16.0 40.0 39 32.35451253973861 35.0 32.0 38.0 15.0 40.0 40 32.1840221358766 35.0 32.0 38.0 15.0 40.0 41 31.92724596726716 35.0 31.0 38.0 14.0 40.0 42 32.10280819498411 35.0 32.0 38.0 13.0 40.0 43 31.885480689979982 35.0 32.0 38.0 12.0 40.0 44 31.66970446249853 35.0 31.0 38.0 10.0 40.0 45 31.595955492758744 35.0 31.0 38.0 10.0 40.0 46 31.47583009537266 35.0 31.0 38.0 10.0 40.0 47 31.488587660426234 35.0 31.0 38.0 10.0 40.0 48 31.55560167196515 35.0 31.0 38.0 10.0 40.0 49 31.671959260567526 35.0 31.0 38.0 10.0 40.0 50 31.669003885552808 35.0 31.0 38.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 3.0 12 5.0 13 12.0 14 20.0 15 71.0 16 169.0 17 387.0 18 857.0 19 1460.0 20 2212.0 21 3219.0 22 4774.0 23 6821.0 24 9958.0 25 15067.0 26 20938.0 27 23492.0 28 22037.0 29 21281.0 30 23120.0 31 28439.0 32 39650.0 33 65354.0 34 113150.0 35 64105.0 36 51510.0 37 69581.0 38 74972.0 39 16775.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.034234075120686 22.214912280701753 27.942128811962792 23.808724832214764 2 37.92696926880961 20.3031908630637 30.00353232073472 11.76630754739197 3 26.934681502413753 18.558371600141292 41.798981514188156 12.7079653832568 4 24.509448957965382 24.068350406216883 37.04227010479218 14.37993053102555 5 18.836541858000707 29.427764040974917 38.756181561285764 12.979512539738607 6 18.534234075120686 35.30142470269634 36.29665606970446 9.867685152478511 7 75.52072294831036 5.181914517838219 16.95881902743436 2.3385435064170497 8 78.31169786883315 2.956405274932297 16.280466266336983 2.4514305898975626 9 75.26963381608384 4.066731425880136 17.594195219592606 3.069439538443424 10 54.49944071588367 15.642440833627694 21.010096550100084 8.848021900388556 11 49.63852584481337 15.273166136818556 25.122159425409162 9.966148592958907 12 43.67273048392794 18.034557871188035 28.35747085835394 9.935240786530084 13 19.047009301777933 41.6582774049217 28.883492287766394 10.41122100553397 14 12.245378547038738 43.459466619569056 33.548216178028966 10.746938655363241 15 10.758124337689862 19.18300365006476 58.76957494407159 11.28929706817379 16 11.699634993524079 13.531437654539033 57.74608501118568 17.022842340751208 17 12.530024726245143 13.721005533969151 36.15065347933593 37.598316260449785 18 19.570675850700578 18.905127752266573 42.456581890969034 19.06761450606382 19 27.04565524549629 20.45949605557518 32.89532556222772 19.599523136700814 20 30.042829388908515 18.566613681855646 32.11644884022136 19.274108089014483 21 19.38464029200518 25.63257977157659 35.0853644177558 19.897415518662427 22 20.323648887318967 20.59151654303544 32.43421052631579 26.650624043329803 23 16.530525138349226 26.99811609560815 30.703520546332275 25.76783821971035 24 17.440539267632168 19.897415518662427 47.60699988225598 15.05504533144943 25 14.681060873660662 20.13157894736842 45.362945955492755 19.824414223478158 26 12.935505710585188 32.5547509713882 35.054603791357586 19.455139526669022 27 14.431443541740258 32.93329801012599 36.09663840810079 16.53862004003297 28 12.453049570234311 25.55854821617803 47.709878723654775 14.278523489932887 29 12.912692805840104 20.255504533144943 46.79603791357589 20.035764747439067 30 16.467532085246674 27.532526786765573 38.99623219121629 17.00370893677146 31 29.074384787472034 23.243700694689746 30.48657718120805 17.195337336630164 32 29.7044624985282 22.643500529848108 32.27319557282468 15.378841398799011 33 27.97141763805487 24.966001412928293 29.73934416578359 17.323236783233252 34 18.035146591310493 26.314464853408694 31.457671023195573 24.192717532085247 35 18.31478864947604 24.5238726009655 35.83539385376192 21.32594489579654 36 31.37966560697045 22.14588484634405 29.154597904156365 17.31985164252914 37 19.63057812316025 30.683209702107618 31.917461438831978 17.768750735900152 38 19.684887554456612 31.63193217944189 26.71935711762628 21.963823148475214 39 19.801601318733077 29.48501707288355 30.72338985046509 19.989991757918286 40 23.530260214294124 24.195513952666904 27.989079241728483 24.285146591310493 41 16.295184269398327 21.96661956905687 31.06087366066172 30.67732250088308 42 22.310579300600494 23.101524785117157 26.435299658542327 28.15259625574002 43 22.507800541622515 23.712174732132343 27.899005062993055 25.88101966325209 44 18.841693159072175 28.740433298010124 30.78108442246556 21.63678912045214 45 15.806988107853526 37.93727187095255 25.135552808194983 21.12018721299894 46 22.104821617802898 30.941805015895447 28.13670081243377 18.816672553867893 47 20.788149063935006 26.106205110090663 28.821529494878135 24.284116331096197 48 22.92108206758507 21.65754150476863 33.24016837395502 22.181208053691275 49 20.918256210997292 20.967267161191568 35.315259625574 22.79921700223714 50 18.49552572706935 30.77313670081243 29.770399152243023 20.96093841987519 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 338.0 1 506.5 2 675.0 3 8380.5 4 16086.0 5 11750.0 6 7414.0 7 8121.0 8 8828.0 9 9692.0 10 10556.0 11 10581.5 12 10607.0 13 9954.5 14 9302.0 15 8544.5 16 7787.0 17 7049.5 18 6312.0 19 5788.0 20 5264.0 21 4799.5 22 4335.0 23 4011.5 24 3688.0 25 3545.5 26 3403.0 27 3496.5 28 3590.0 29 4106.0 30 4622.0 31 5378.0 32 6134.0 33 7051.5 34 7969.0 35 9683.0 36 11397.0 37 13742.0 38 16087.0 39 21621.0 40 27155.0 41 41903.5 42 56652.0 43 66002.5 44 75353.0 45 75132.0 46 74911.0 47 69939.0 48 64967.0 49 59720.5 50 54474.0 51 48860.0 52 43246.0 53 39138.0 54 35030.0 55 29997.5 56 24965.0 57 22129.5 58 19294.0 59 17450.0 60 15606.0 61 14781.5 62 13957.0 63 12252.5 64 10548.0 65 8691.5 66 6835.0 67 5785.5 68 4736.0 69 3864.5 70 2993.0 71 2466.5 72 1940.0 73 1477.5 74 1015.0 75 860.0 76 705.0 77 529.5 78 354.0 79 246.0 80 138.0 81 121.5 82 105.0 83 63.5 84 22.0 85 23.5 86 25.0 87 18.0 88 11.0 89 7.5 90 4.0 91 3.5 92 3.0 93 2.0 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 679440.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.451537275435125 #Duplication Level Percentage of deduplicated Percentage of total 1 78.57453112936676 19.99842607938916 2 7.327142161484912 3.729740636908911 3 3.013465910527759 2.300920198501509 4 1.9104215851970374 1.9449266474975302 5 1.2102168228964547 1.540093928965389 6 0.899540198474888 1.3736808535341554 7 0.6306947458788452 1.123650558390956 8 0.509537041222789 1.037480079831739 9 0.3930886862969181 0.9004240216654052 >10 3.7350167682043023 22.29679174667775 >50 1.2091339602058273 22.132771751724533 >100 0.5860539242528723 19.823519932958927 >500 0.0 0.0 >1k 5.78532995313793E-4 0.19583656946746522 >5k 0.0 0.0 >10k+ 5.78532995313793E-4 1.6017369944865312 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10878 1.6010243730130695 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1330 0.19574944071588368 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03767808783704227 0.0 2 0.0 0.0 0.0 0.13687742847050513 0.0 3 0.0 0.0 0.0 0.18044271753208524 0.0 4 0.0 0.0 0.0 0.26772047568585894 0.0 5 0.0 0.0 0.0 0.44992935358530556 0.0 6 0.0 0.0 0.0 0.6325797715765925 0.0 7 0.0 0.0 0.0 0.7706346402920052 0.0 8 0.0 0.0 0.0 1.1440303779583185 0.0 9 0.0 0.0 0.0 1.3040150712351348 0.0 10 0.0 0.0 0.0 1.568203226186271 0.0 11 0.0 0.0 0.0 1.7633639467797009 0.0 12 1.4718003061344636E-4 0.0 0.0 1.9471918050158954 0.0 13 4.415400918403391E-4 0.0 0.0 2.0253444012716355 0.0 14 4.415400918403391E-4 0.0 0.0 2.050659366537148 0.0 15 4.415400918403391E-4 0.0 0.0 2.0878959142823503 0.0 16 4.415400918403391E-4 0.0 0.0 2.187095254915813 0.0 17 4.415400918403391E-4 0.0 0.0 2.3016013187330744 0.0 18 4.415400918403391E-4 0.0 0.0 2.509861062051101 0.0 19 4.415400918403391E-4 0.0 0.0 2.570940774755681 0.0 20 4.415400918403391E-4 0.0 0.0 2.657924172848228 0.0 21 4.415400918403391E-4 0.0 0.0 2.7506475921346993 0.0 22 4.415400918403391E-4 0.0 0.0 2.834098669492523 0.0 23 4.415400918403391E-4 0.0 0.0 2.937566231013776 0.0 24 4.415400918403391E-4 0.0 0.0 3.0098316260449782 0.0 25 4.415400918403391E-4 0.0 0.0 3.067820558106676 0.0 26 4.415400918403391E-4 0.0 0.0 3.1352290121276347 0.0 27 4.415400918403391E-4 0.0 0.0 3.19439538443424 0.0 28 5.887201224537854E-4 0.0 0.0 3.255622277169434 0.0 29 5.887201224537854E-4 0.0 0.0 3.3237666313434593 0.0 30 5.887201224537854E-4 0.0 0.0 3.4133992699870483 0.0 31 7.359001530672318E-4 0.0 0.0 3.499941127987755 0.0 32 7.359001530672318E-4 0.0 0.0 3.575444483692453 0.0 33 7.359001530672318E-4 0.0 0.0 3.6547745201931003 0.0 34 7.359001530672318E-4 0.0 0.0 3.742788178499941 0.0 35 7.359001530672318E-4 0.0 0.0 3.8612681031437655 0.0 36 7.359001530672318E-4 0.0 0.0 3.940156599552573 0.0 37 7.359001530672318E-4 0.0 0.0 4.0199281761450605 0.0 38 7.359001530672318E-4 0.0 0.0 4.112357235370305 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGTCTA 65 0.0 44.000004 31 GTTTGCG 20 7.8542065E-4 44.0 1 CTAGAAT 20 7.8542065E-4 44.0 41 GTACACT 70 0.0 44.0 18 ATCTAAC 20 7.8542065E-4 44.0 24 CACGGCA 20 7.8542065E-4 44.0 17 CGACGAT 50 2.7284841E-11 44.0 34 GACACAA 25 4.4409113E-5 44.0 9 AGCCCGA 25 4.4409113E-5 44.0 32 ATAATCG 25 4.4409113E-5 44.0 16 CGTTGCC 20 7.8542065E-4 44.0 21 CCCAGTA 20 7.8542065E-4 44.0 41 TTGTACG 30 2.5261816E-6 44.0 1 TAAGTCG 20 7.8542065E-4 44.0 1 ACGGGTC 20 7.8542065E-4 44.0 5 TCGATAG 20 7.8542065E-4 44.0 1 TAGCCGT 20 7.8542065E-4 44.0 44 CCGTCGA 20 7.8542065E-4 44.0 15 TAGTTCG 20 7.8542065E-4 44.0 1 CCGTATG 20 7.8542065E-4 44.0 35 >>END_MODULE