##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546046_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 597523 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.085263663490778 28.0 25.0 30.0 16.0 33.0 2 26.08341101514084 30.0 25.0 31.0 10.0 33.0 3 26.408739077826294 30.0 25.0 31.0 16.0 33.0 4 27.956671123956735 32.0 19.0 35.0 10.0 37.0 5 31.290418946216295 33.0 30.0 35.0 19.0 37.0 6 29.877536094844885 33.0 28.0 35.0 17.0 37.0 7 29.768484225711813 32.0 28.0 35.0 17.0 35.0 8 32.5329686053926 33.0 32.0 35.0 28.0 35.0 9 27.134528712702274 31.0 23.0 34.0 10.0 35.0 10 32.094262480272725 35.0 31.0 37.0 19.0 37.0 11 33.88270409674607 35.0 32.0 38.0 27.0 39.0 12 33.029048254209464 35.0 31.0 37.0 25.0 39.0 13 32.088070250015484 35.0 30.0 37.0 21.0 39.0 14 31.832349549724444 34.0 27.0 38.0 20.0 40.0 15 31.37865990095779 33.0 27.0 38.0 17.0 40.0 16 30.219127966622207 33.0 26.0 37.0 17.0 40.0 17 29.96035633774767 32.0 25.0 37.0 17.0 40.0 18 31.05715261169863 33.0 27.0 37.0 18.0 39.0 19 30.615082599330904 34.0 27.0 37.0 18.0 39.0 20 31.342355022317133 34.0 29.0 35.0 19.0 39.0 21 32.084137347014256 34.0 30.0 36.0 23.0 39.0 22 32.42643881490754 34.0 30.0 36.0 23.0 39.0 23 33.90205565308783 35.0 33.0 37.0 28.0 39.0 24 33.56916135445832 35.0 33.0 37.0 26.0 39.0 25 32.35659882548454 34.0 31.0 36.0 23.0 39.0 26 26.058667197748036 33.0 20.0 35.0 0.0 38.0 27 29.067833372104506 33.0 23.0 35.0 10.0 39.0 28 30.62018700535377 33.0 27.0 36.0 18.0 39.0 29 32.033248929329915 34.0 30.0 36.0 23.0 39.0 30 31.674616709314954 34.0 30.0 36.0 21.0 39.0 31 30.611681893416655 33.0 29.0 35.0 18.0 38.0 32 30.712523199943767 34.0 29.0 36.0 18.0 38.0 33 30.436301196774014 33.0 29.0 35.0 17.0 38.0 34 30.539808509463235 34.0 29.0 36.0 15.0 38.0 35 29.761769839822065 33.0 27.0 36.0 10.0 38.0 36 29.358665691529865 33.0 26.0 35.0 10.0 38.0 37 29.365468776934108 33.0 26.0 36.0 10.0 38.0 38 29.196551429819436 33.0 26.0 35.0 10.0 38.0 39 29.13331202313551 33.0 25.0 35.0 10.0 38.0 40 29.134316168582632 33.0 26.0 35.0 10.0 38.0 41 28.629610910375 33.0 23.0 35.0 10.0 38.0 42 28.748510099192835 33.0 24.0 35.0 9.0 38.0 43 28.323664528394723 32.0 23.0 35.0 8.0 38.0 44 27.98038903941773 32.0 23.0 35.0 8.0 38.0 45 27.369460255086416 31.0 23.0 34.0 8.0 37.0 46 27.051266645802755 31.0 23.0 34.0 8.0 37.0 47 27.301325639347773 31.0 23.0 34.0 8.0 37.0 48 27.470689831186416 31.0 23.0 34.0 8.0 37.0 49 27.35870585734775 31.0 23.0 34.0 8.0 37.0 50 29.012945108389133 33.0 26.0 35.0 10.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 17.0 12 24.0 13 76.0 14 215.0 15 469.0 16 917.0 17 1840.0 18 2974.0 19 4798.0 20 7019.0 21 9838.0 22 13224.0 23 17289.0 24 22062.0 25 27307.0 26 32178.0 27 35204.0 28 39586.0 29 46712.0 30 55536.0 31 63989.0 32 65535.0 33 58226.0 34 42985.0 35 31150.0 36 15129.0 37 3135.0 38 88.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 24.20844051191335 23.018528157075124 27.641446438045065 25.131584892966462 2 37.749007151189154 17.5507888399275 31.806307037553367 12.893896971329974 3 28.307027511911677 14.231418706894965 43.669113992264734 13.792439788928625 4 25.796663894109518 23.858997896315287 35.92363808589795 14.420700123677246 5 18.010687454708858 29.6847150653615 39.709099063969084 12.595498415960558 6 18.554766929473846 33.66598440562121 37.751350157232444 10.027898507672509 7 78.08569711960878 3.6609469426281502 16.766718603300625 1.486637334462439 8 81.5136823185049 1.4851311162917578 15.71454153229248 1.286645032910867 9 69.90944281642714 2.190710650468685 15.902986161202163 11.996860371902002 10 56.91496394281057 14.509901710896484 20.808404027962105 7.766730318330843 11 52.055402051469144 14.241794876515213 24.81678529529407 8.886017776721564 12 45.134831629912156 17.810193080433724 28.305353936166473 8.749621353487647 13 18.3417207371097 43.36268227331835 28.657306915382335 9.638290074189612 14 11.326425928374304 44.27461369687861 34.181613092717775 10.217347282029312 15 9.270103410245296 17.255068005750406 60.00388269572887 13.470945888275429 16 10.07777106487951 11.432028557896516 58.711547505284315 19.77865287193966 17 11.544994920697613 12.394167253812824 36.84176173971546 39.2190760857741 18 19.075583701380534 18.161978702075064 44.180056667274734 18.582380929269668 19 28.24041919725266 19.323607626819385 33.4972879705049 18.938685205423056 20 30.968682377080047 17.739902899135263 32.70920115208955 18.582213571695146 21 18.946885726574543 25.638845701337022 35.83728157744556 19.576986994642883 22 19.875552907586822 19.94534101616172 32.42820778447022 27.750898291781233 23 15.653121302443587 26.959464321875476 31.268921865769183 26.11849250991175 24 16.303472837028867 19.008305956423435 50.55721704436482 14.131004162182878 25 13.731354274228774 18.704719316243892 47.88301036110744 19.680916048419896 26 9.909074629763206 43.934543105453685 29.39167195237673 16.764710312406383 27 13.16869810869205 34.68000394963876 36.509724311867494 15.641573629801698 28 11.44792752747593 25.56303272007939 49.48746742803206 13.501572324412617 29 11.862806954711367 19.853796422899205 48.317637982136254 19.965758640253178 30 15.920726064101299 27.967124278061263 39.59630005874251 16.51584959909493 31 30.260425121710792 22.900875782187462 30.793124281408414 16.045574814693325 32 30.79061391779061 21.179435770673262 33.10416502795708 14.925785283579044 33 29.068337118403807 24.1515389365765 29.64220624143338 17.137917703586307 34 17.68818940860854 25.32337667336655 31.330509453192594 25.657924464832316 35 17.995290557853004 23.91991605344062 36.114760435999955 21.970032952706422 36 32.4330611541313 21.32855136957071 28.655298624488097 17.58308885180989 37 18.9000256057089 31.899023133837527 31.314777841187702 17.88617341926587 38 18.995084708036345 32.792377866626055 26.14142049762101 22.071116927716588 39 19.49180198921213 30.0544079474765 30.230802831020732 20.22298723229064 40 23.719589036740008 23.191743246703474 27.807297794394525 25.281369922161996 41 15.447104128209292 21.264286060954976 30.793124281408414 32.49548552942732 42 21.41139336895818 22.030449037108195 25.650393373978908 30.907764219954714 43 21.8992406986844 22.4533616279206 27.891813369527195 27.755584303867803 44 17.768018971654648 28.225859088269406 31.16097623020369 22.845145709872256 45 14.7584277090589 39.75930633632513 24.291617226449862 21.19064872816611 46 21.170231104074656 31.017885503988968 27.619355238208403 20.192528153727974 47 20.075712566712912 25.31785387340738 28.212470482307793 26.393963077571907 48 22.079484806442597 20.94597195421766 34.20872501979003 22.765818219549708 49 20.786480185699965 20.750498307178134 35.18458703681699 23.27843447030491 50 18.10758749035602 32.06135998112207 29.068337118403807 20.762715410118105 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 164.0 1 289.0 2 414.0 3 4834.0 4 9254.0 5 7550.0 6 5846.0 7 6193.5 8 6541.0 9 7433.0 10 8325.0 11 8922.0 12 9519.0 13 9550.0 14 9581.0 15 9144.0 16 8707.0 17 8233.0 18 7759.0 19 7236.5 20 6714.0 21 6142.0 22 5570.0 23 5016.5 24 4463.0 25 4242.5 26 4022.0 27 3849.5 28 3677.0 29 4010.5 30 4344.0 31 4972.5 32 5601.0 33 6251.0 34 6901.0 35 8215.0 36 9529.0 37 11127.0 38 12725.0 39 17794.0 40 22863.0 41 35284.0 42 47705.0 43 56354.5 44 65004.0 45 65088.5 46 65173.0 47 61528.0 48 57883.0 49 52417.0 50 46951.0 51 42720.0 52 38489.0 53 34458.5 54 30428.0 55 26634.5 56 22841.0 57 20129.5 58 17418.0 59 15791.0 60 14164.0 61 13168.0 62 12172.0 63 10694.5 64 9217.0 65 7756.5 66 6296.0 67 5224.0 68 4152.0 69 3515.5 70 2879.0 71 2318.0 72 1757.0 73 1392.0 74 1027.0 75 862.5 76 698.0 77 554.0 78 410.0 79 287.5 80 165.0 81 131.5 82 98.0 83 69.0 84 40.0 85 29.0 86 18.0 87 14.5 88 11.0 89 7.5 90 4.0 91 3.5 92 3.0 93 1.5 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 597523.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.94829425818666 #Duplication Level Percentage of deduplicated Percentage of total 1 83.6686596031386 32.587515744110966 2 6.3935234524867575 4.980336655481434 3 2.414707390848973 2.8214620201861176 4 1.299494669461803 2.024524030925732 5 0.8258568888087292 1.608285856023646 6 0.608102906681966 1.4210742569224697 7 0.4664131201970118 1.2716196815918537 8 0.3821759209939159 1.1908080183411627 9 0.29578480248245614 1.0368282171767689 >10 2.840776160162531 24.78255807941378 >50 0.6608096994492976 17.835031412701507 >100 0.14275002091103964 7.296868884370522 >500 4.7268218844715104E-4 0.10456973700826182 >1k 0.0 0.0 >5k 4.7268218844715104E-4 1.0385174057457833 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5641 0.9440640778681323 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.027446642221303615 0.0 2 0.0 0.0 0.0 0.10643941739481158 0.0 3 0.0 0.0 0.0 0.14124979289500153 0.0 4 0.0 0.0 0.0 0.20484567121265626 0.0 5 0.0 0.0 0.0 0.3377275853816506 0.0 6 0.0 0.0 0.0 0.4443343603509823 0.0 7 0.0 0.0 0.0 0.5213188446302486 0.0 8 0.0 0.0 0.0 0.7492598611266846 0.0 9 0.0 0.0 0.0 0.8801334844014372 0.0 10 0.0 0.0 0.0 1.0568630830947092 0.0 11 0.0 0.0 0.0 1.1952677972228685 0.0 12 0.0 0.0 0.0 1.321622765985577 0.0 13 0.0 0.0 0.0 1.3721647534906607 0.0 14 0.0 0.0 0.0 1.387896365495554 0.0 15 0.0 0.0 0.0 1.4118284986519347 0.0 16 0.0 0.0 0.0 1.4662197103709815 0.0 17 0.0 0.0 0.0 1.5522415036743356 0.0 18 0.0 0.0 0.0 1.7005203146991832 0.0 19 0.0 0.0 0.0 1.7381757689662156 0.0 20 0.0 0.0 0.0 1.7912281200891012 0.0 21 0.0 0.0 0.0 1.8412680348706243 0.0 22 0.0 0.0 0.0 1.893483598120909 0.0 23 0.0 0.0 0.0 1.9545691128207616 0.0 24 0.0 0.0 0.0 1.9975800094724387 0.0 25 0.0 0.0 0.0 2.0250266516937425 0.0 26 0.0 0.0 0.0 2.058330809023251 0.0 27 0.0 0.0 0.0 2.094814760268642 0.0 28 0.0 0.0 0.0 2.139833947814561 0.0 29 0.0 0.0 0.0 2.189706505021564 0.0 30 0.0 0.0 0.0 2.2727158619835555 0.0 31 0.0 0.0 0.0 2.340830394813254 0.0 32 0.0 0.0 0.0 2.400744406491466 0.0 33 0.0 0.0 0.0 2.455805048508593 0.0 34 0.0 0.0 0.0 2.5212418601459694 0.0 35 0.0 0.0 0.0 2.607096295874803 0.0 36 0.0 0.0 0.0 2.6681818105746555 0.0 37 0.0 0.0 0.0 2.733618622212032 0.0 38 0.0 0.0 0.0 2.798386003551328 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GACAGTC 30 2.5256686E-6 44.000004 9 GCGTTAG 60 0.0 44.000004 1 TTCGCAA 30 2.5256686E-6 44.000004 14 CGTCAGA 30 2.5256686E-6 44.000004 30 ACGCGAG 20 7.853443E-4 44.0 1 CGGAATC 40 8.301868E-9 44.0 9 AGCGTAA 25 4.440266E-5 44.0 1 TTGGCCA 20 7.853443E-4 44.0 5 GTACACT 55 1.8189894E-12 44.0 18 CACGGTA 20 7.853443E-4 44.0 30 ACGTTAG 40 8.301868E-9 44.0 1 CCGGCAT 20 7.853443E-4 44.0 17 GACAATC 20 7.853443E-4 44.0 9 AGAAGTC 20 7.853443E-4 44.0 36 GTCTAAA 40 8.301868E-9 44.0 33 ACTTATG 25 4.440266E-5 44.0 1 ATACTCG 35 1.4445322E-7 44.0 44 ACCTAGC 20 7.853443E-4 44.0 34 ATTCACG 20 7.853443E-4 44.0 1 TCTAACG 25 4.440266E-5 44.0 23 >>END_MODULE