##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546045_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 995782 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.899499087149596 31.0 28.0 33.0 16.0 33.0 2 28.71746727697428 31.0 28.0 33.0 16.0 33.0 3 28.152821601515193 31.0 27.0 33.0 16.0 34.0 4 32.307654687471754 35.0 32.0 35.0 26.0 37.0 5 33.628226860899275 35.0 33.0 35.0 28.0 37.0 6 33.407289949004905 35.0 33.0 37.0 28.0 37.0 7 34.4001207091512 35.0 35.0 37.0 31.0 37.0 8 34.7643249225232 35.0 35.0 37.0 32.0 37.0 9 36.49748941033278 39.0 37.0 39.0 32.0 39.0 10 36.218942499462734 38.0 35.0 39.0 31.0 39.0 11 36.295433136971745 38.0 35.0 39.0 32.0 39.0 12 35.07079762437964 37.0 34.0 39.0 29.0 39.0 13 35.21852975852144 37.0 34.0 39.0 27.0 39.0 14 35.93070370824136 38.0 34.0 40.0 28.0 41.0 15 36.52466102018313 38.0 35.0 40.0 31.0 41.0 16 36.05961144105839 38.0 34.0 40.0 30.0 41.0 17 35.68888873267442 37.0 34.0 40.0 29.0 41.0 18 35.33711193815514 37.0 33.0 39.0 29.0 40.0 19 34.78512967697749 37.0 33.0 39.0 27.0 40.0 20 35.28541889690715 36.0 34.0 39.0 29.0 40.0 21 35.514970144067675 36.0 34.0 39.0 30.0 40.0 22 35.87875559108319 37.0 34.0 40.0 31.0 41.0 23 36.22946990405531 37.0 35.0 40.0 31.0 41.0 24 35.9177862222856 36.0 35.0 40.0 31.0 41.0 25 35.56946299491254 36.0 34.0 40.0 30.0 41.0 26 35.68610800355901 36.0 34.0 40.0 30.0 41.0 27 35.96295373887055 37.0 35.0 40.0 31.0 41.0 28 35.88819440399605 37.0 35.0 40.0 31.0 41.0 29 36.025495540188516 37.0 35.0 40.0 31.0 41.0 30 35.65193184853713 36.0 35.0 40.0 30.0 41.0 31 34.97284244945179 36.0 34.0 40.0 29.0 41.0 32 34.94678453717781 36.0 34.0 40.0 27.0 41.0 33 34.69687943746724 36.0 34.0 40.0 25.0 41.0 34 34.43996175869819 36.0 34.0 40.0 23.0 41.0 35 34.20697401640118 36.0 34.0 40.0 22.0 41.0 36 33.81991339469884 36.0 33.0 40.0 20.0 41.0 37 33.741012591109296 36.0 33.0 40.0 20.0 41.0 38 33.58319692462808 36.0 33.0 40.0 18.0 41.0 39 33.392786774615324 36.0 33.0 40.0 18.0 41.0 40 33.19873426111338 36.0 33.0 40.0 18.0 40.0 41 32.90257506160987 35.0 33.0 39.0 17.0 40.0 42 33.08847719681617 35.0 33.0 40.0 18.0 40.0 43 32.84912159488724 35.0 33.0 39.0 17.0 40.0 44 32.702756225760254 35.0 32.0 39.0 15.0 40.0 45 32.64624084387948 35.0 32.0 39.0 17.0 40.0 46 32.459238066163074 35.0 32.0 39.0 15.0 40.0 47 32.420478578644726 35.0 32.0 39.0 15.0 40.0 48 32.444606349582536 35.0 32.0 39.0 17.0 40.0 49 32.43266096394592 35.0 32.0 39.0 15.0 40.0 50 32.5836146867487 35.0 32.0 39.0 15.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 1.0 11 2.0 12 11.0 13 22.0 14 58.0 15 139.0 16 313.0 17 588.0 18 1106.0 19 1888.0 20 2819.0 21 4370.0 22 6094.0 23 8665.0 24 12287.0 25 18231.0 26 25541.0 27 29172.0 28 28001.0 29 27748.0 30 31147.0 31 38008.0 32 51519.0 33 77875.0 34 123149.0 35 94320.0 36 98658.0 37 135140.0 38 147356.0 39 31552.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.770955891952255 22.103331853759155 27.863327515460213 21.262384738828377 2 36.646575254423155 20.406072815134234 29.987085526751837 12.960266403690767 3 28.286311662592816 19.151782217392963 38.71188673826199 13.850019381752233 4 25.652100560162765 25.51512278791944 34.079647955074506 14.753128696843284 5 21.319023641720776 29.162105762104556 35.609601298276125 13.909269297898536 6 19.10066661176844 37.18836050460844 32.73427316420662 10.9766997194165 7 77.39716122605148 4.8735566620003175 15.028891865890326 2.700390246057872 8 78.77125716271232 3.468931954986131 14.71336095651458 3.0464499257869693 9 74.91750202353528 5.138574507271672 16.13746783934636 3.806455629846693 10 44.662084673151355 22.44597713154084 21.410609952780828 11.48132824252698 11 38.63375718781822 20.149490551144726 28.07210815218592 13.144644108851134 12 35.32389619414691 20.23063280918916 30.881156719040913 13.564314277623012 13 20.962218638215997 33.03032189776477 31.062923410947374 14.944536053071857 14 16.37105310198417 33.62673757910868 34.072718727592985 15.929490591314163 15 14.982295321666792 22.00772859923156 47.10749943260674 15.902476646494915 16 16.697128487962225 17.78963668754808 45.71623106262214 19.797003761867558 17 17.2894268022519 18.687423552544633 34.61360016549807 29.409549479705397 18 21.121992564637644 21.27262794467062 38.05632156435846 19.549057926333273 19 25.496142730035288 23.19563920617163 31.016427290310528 20.29179077348255 20 26.817415860097892 21.84524323596932 31.641463693860704 19.695877210072084 21 21.40167225356554 25.636032786292585 33.470578901807826 19.491716058334053 22 21.673418479145035 21.791617040677576 31.970150093092663 24.564814387084724 23 18.915987635848005 26.920249612867075 31.54214476662563 22.62161798465929 24 18.926532112450314 22.068986987111636 41.26254541656708 17.741935483870968 25 18.02723889365343 22.860023579458154 38.248632732867236 20.86410479402118 26 17.09410292614247 28.67957042806558 32.71459014121565 21.511736504576305 27 16.80387876061226 28.685897114026965 34.64352639433129 19.866697731029483 28 16.256469789572417 24.63350412037976 41.06631772817745 18.04370836187037 29 16.646715847444522 22.248042242177505 39.715720910801764 21.389520999576213 30 18.694151932852773 26.998981704830978 35.67296858147667 18.633897780839582 31 26.04676525584917 24.596648664065025 30.470122978724255 18.886463101361542 32 25.597871823350893 24.309738476895546 31.09064032087344 19.001749378880117 33 24.77078316338315 25.116742419525558 30.699791721481205 19.412682695610084 34 18.872403799225133 25.528579548535724 32.25786366895566 23.34115298328349 35 20.142862594423278 24.80191447525663 33.33299858804437 21.72222434227572 36 26.72211387633036 24.304416026801047 29.113199475387187 19.86027062148141 37 20.292995856522815 29.19916206559267 30.418806525926357 20.08903555195816 38 20.586232729653677 29.91116529521522 28.646731915218393 20.85587005991271 39 20.12548931392614 28.242326131623187 29.341060593583734 22.291123960866937 40 23.299778465567762 24.73955142792298 29.046719060999294 22.91395104550996 41 19.035491704007505 22.741925441512297 30.832953397430362 27.389629457049836 42 21.50159372232075 24.417593408999156 27.398265885505058 26.682546983175033 43 21.217796666338618 25.406364043535635 28.264118049934623 25.111721240191127 44 19.808351627163375 27.505116581741785 29.82731160033019 22.859220190764646 45 18.402521837108925 32.06956944391443 26.993357983976413 22.53455073500023 46 21.644396062592016 28.82126810888327 28.885539204364008 20.64879662416071 47 20.858681920339993 26.002779724879545 29.945711009036113 23.192827345744348 48 21.20192973964181 24.468709014623684 32.25695985667546 22.072401389059053 49 20.562532763195158 24.135202283230665 32.54919249393944 22.75307245963474 50 19.364881068346286 28.762319463497033 30.593242296004547 21.27955717215214 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 376.0 1 869.0 2 1362.0 3 12628.0 4 23894.0 5 17002.0 6 10110.0 7 10135.0 8 10160.0 9 10656.0 10 11152.0 11 11023.0 12 10894.0 13 10373.5 14 9853.0 15 9269.5 16 8686.0 17 8011.5 18 7337.0 19 6832.0 20 6327.0 21 5995.5 22 5664.0 23 5409.0 24 5154.0 25 5768.0 26 6382.0 27 7198.5 28 8015.0 29 8786.0 30 9557.0 31 11792.5 32 14028.0 33 18385.0 34 22742.0 35 23837.0 36 24932.0 37 26299.0 38 27666.0 39 34243.5 40 40821.0 41 55210.5 42 69600.0 43 78838.5 44 88077.0 45 91163.0 46 94249.0 47 88897.0 48 83545.0 49 80479.5 50 77414.0 51 71511.5 52 65609.0 53 59464.0 54 53319.0 55 48202.0 56 43085.0 57 40462.5 58 37840.0 59 34053.0 60 30266.0 61 27912.5 62 25559.0 63 22896.5 64 20234.0 65 17201.0 66 14168.0 67 12037.5 68 9907.0 69 8575.0 70 7243.0 71 5752.5 72 4262.0 73 3751.0 74 3240.0 75 2263.0 76 1286.0 77 1019.0 78 752.0 79 613.5 80 475.0 81 340.5 82 206.0 83 172.5 84 139.0 85 98.0 86 57.0 87 50.5 88 44.0 89 33.5 90 23.0 91 27.0 92 31.0 93 34.0 94 37.0 95 20.0 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 995782.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.566453732644497 #Duplication Level Percentage of deduplicated Percentage of total 1 76.6271300227499 21.12338234437469 2 7.24652016707597 3.9952172581675 3 3.1898545646365983 2.637989348097589 4 2.006703479786829 2.2127079452272125 5 1.4412370850750975 1.9864897711747047 6 1.1188317865928792 1.8505334807834752 7 0.8787312055356779 1.6956452184581128 8 0.688731123984902 1.5188699730849635 9 0.5517338278872708 1.3688410535270363 >10 4.955425271321019 30.076347902150086 >50 1.020116681816545 19.849529220500038 >100 0.27352015086876513 9.931375764499489 >500 7.323163343206503E-4 0.10578178918200051 >1k 3.6615816716032513E-4 0.10366211592549097 >5k 0.0 0.0 >10k+ 3.6615816716032513E-4 1.543626814847647 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15293 1.5357779112295662 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1027 0.10313502352924636 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.036052067621226334 0.0 2 0.0 0.0 0.0 0.13356337029590815 0.0 3 0.0 0.0 0.0 0.17734805409216073 0.0 4 0.0 0.0 0.0 0.27345342655320143 0.0 5 0.0 0.0 0.0 0.48494550011950405 0.0 6 0.0 0.0 0.0 0.70216171812706 0.0 7 0.0 0.0 0.0 0.8587220897746696 0.0 8 0.0 0.0 0.0 1.3176578809418125 0.0 9 0.0 0.0 0.0 1.5258359761473896 0.0 10 0.0 0.0 0.0 1.8459863705108146 0.0 11 0.0 0.0 0.0 2.083186882269412 0.0 12 0.0 0.0 0.0 2.310043764599079 0.0 13 0.0 0.0 0.0 2.413279211715014 0.0 14 0.0 0.0 0.0 2.4452139122820054 0.0 15 0.0 0.0 0.0 2.492212150852295 0.0 16 0.0 0.0 0.0 2.5949454800347866 0.0 17 0.0 0.0 0.0 2.7209770813290457 0.0 18 0.0 0.0 0.0 2.92192467829304 0.0 19 0.0 0.0 0.0 3.0042720193777352 0.0 20 1.0042358668865273E-4 0.0 0.0 3.096260024784541 0.0 21 1.0042358668865273E-4 0.0 0.0 3.2161657872907927 0.0 22 1.0042358668865273E-4 0.0 0.0 3.3385821394642603 0.0 23 1.0042358668865273E-4 0.0 0.0 3.467927719119245 0.0 24 1.0042358668865273E-4 0.0 0.0 3.5650373274471723 0.0 25 1.0042358668865273E-4 0.0 0.0 3.651200764826036 0.0 26 1.0042358668865273E-4 0.0 0.0 3.727321843536035 0.0 27 1.0042358668865273E-4 0.0 0.0 3.813786551674965 0.0 28 1.0042358668865273E-4 0.0 0.0 3.9064775221885917 0.0 29 1.0042358668865273E-4 0.0 0.0 3.9984655275953975 0.0 30 1.0042358668865273E-4 0.0 0.0 4.1291166138773345 0.0 31 2.0084717337730547E-4 0.0 0.0 4.237674511087768 0.0 32 3.012707600659582E-4 0.0 0.0 4.341412076137146 0.0 33 3.012707600659582E-4 0.0 0.0 4.452279715841419 0.0 34 3.012707600659582E-4 0.0 0.0 4.560837613051853 0.0 35 3.012707600659582E-4 0.0 0.0 4.702736141042919 0.0 36 3.012707600659582E-4 0.0 0.0 4.807578365545872 0.0 37 3.012707600659582E-4 0.0 0.0 4.9152324504761085 0.0 38 4.0169434675461094E-4 0.0 0.0 5.043573794264207 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAACAC 20 7.8559754E-4 44.0 27 CGTATGA 40 8.310963E-9 44.0 15 CTCGTAG 40 8.310963E-9 44.0 1 CGTTGAT 220 0.0 44.0 25 CTAAGCG 30 2.5273748E-6 44.0 1 CCGTCGA 20 7.8559754E-4 44.0 17 GTACTAA 20 7.8559754E-4 44.0 26 CTCGAAT 20 7.8559754E-4 44.0 39 GACGCGT 20 7.8559754E-4 44.0 10 ACGTAAG 25 4.4424094E-5 44.0 1 ATACGGA 25 4.4424094E-5 44.0 39 ATACGAG 25 4.4424094E-5 44.0 1 TAAGCGA 20 7.8559754E-4 44.0 23 TACGTTC 20 7.8559754E-4 44.0 31 CGTTTTT 10300 0.0 43.124275 1 TGCGTAG 110 0.0 42.0 1 TACGGGT 70 0.0 40.857143 4 CTAACGG 65 0.0 40.615383 2 TATCGGG 60 3.6379788E-12 40.333332 3 CGGTCTA 175 0.0 40.22857 31 >>END_MODULE