##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546043_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 986940 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.762597523658986 31.0 28.0 31.0 16.0 33.0 2 28.583573469511823 31.0 28.0 33.0 16.0 33.0 3 28.036114657425983 31.0 26.0 33.0 16.0 34.0 4 32.199894623786655 35.0 32.0 35.0 26.0 37.0 5 33.60835207814051 35.0 33.0 35.0 28.0 37.0 6 33.44549921981073 35.0 33.0 37.0 28.0 37.0 7 34.39449409285265 35.0 35.0 37.0 32.0 37.0 8 34.765632155956794 35.0 35.0 37.0 32.0 37.0 9 36.59401280726285 39.0 37.0 39.0 32.0 39.0 10 36.29705757188887 38.0 35.0 39.0 32.0 39.0 11 36.36355705514013 38.0 35.0 39.0 32.0 39.0 12 35.202852250390094 37.0 34.0 39.0 30.0 39.0 13 35.30789207043995 37.0 34.0 39.0 29.0 39.0 14 36.016124587107626 38.0 34.0 40.0 29.0 41.0 15 36.52524469572619 38.0 35.0 40.0 31.0 41.0 16 36.04561776805074 37.0 34.0 40.0 30.0 41.0 17 35.69353152167305 37.0 34.0 40.0 30.0 41.0 18 35.34737876669301 37.0 33.0 39.0 29.0 40.0 19 34.76472125965104 37.0 33.0 39.0 27.0 40.0 20 35.35849798366669 36.0 34.0 39.0 30.0 40.0 21 35.49542525381482 36.0 34.0 39.0 30.0 40.0 22 35.86260765598719 37.0 34.0 40.0 31.0 41.0 23 36.23573773481671 37.0 35.0 40.0 31.0 41.0 24 35.80673799825724 36.0 34.0 40.0 31.0 41.0 25 35.50723448233935 36.0 34.0 40.0 30.0 41.0 26 35.661454597037306 36.0 34.0 40.0 30.0 41.0 27 35.990234462074696 37.0 35.0 40.0 31.0 41.0 28 35.91191460473787 37.0 35.0 40.0 31.0 41.0 29 36.04791983301923 37.0 35.0 40.0 31.0 41.0 30 35.69735343587249 37.0 35.0 40.0 30.0 41.0 31 34.98423916347498 36.0 34.0 40.0 29.0 41.0 32 35.006956856546495 36.0 34.0 40.0 28.0 41.0 33 34.78806411737289 37.0 34.0 40.0 26.0 41.0 34 34.47310576124182 37.0 34.0 40.0 23.0 41.0 35 34.236888767300954 37.0 34.0 40.0 22.0 41.0 36 33.87790949804446 36.0 33.0 40.0 21.0 41.0 37 33.82136300079032 36.0 33.0 40.0 20.0 41.0 38 33.677040144284355 36.0 33.0 40.0 19.0 41.0 39 33.422279976493 36.0 33.0 40.0 18.0 41.0 40 33.258332826716924 36.0 33.0 40.0 18.0 40.0 41 32.93552495592437 35.0 33.0 39.0 18.0 40.0 42 33.145244898372745 35.0 33.0 40.0 18.0 40.0 43 32.92508460494052 35.0 33.0 39.0 17.0 40.0 44 32.779697853972884 35.0 32.0 39.0 16.0 40.0 45 32.72158388554522 35.0 32.0 39.0 17.0 40.0 46 32.535835005167485 35.0 32.0 39.0 17.0 40.0 47 32.51974790767422 35.0 32.0 39.0 17.0 40.0 48 32.52828540742092 35.0 32.0 39.0 17.0 40.0 49 32.57672705534278 35.0 32.0 39.0 17.0 40.0 50 32.68622307333779 35.0 32.0 39.0 16.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 5.0 11 3.0 12 10.0 13 22.0 14 52.0 15 105.0 16 275.0 17 541.0 18 1058.0 19 1864.0 20 2821.0 21 4184.0 22 5894.0 23 8268.0 24 12035.0 25 18047.0 26 25119.0 27 28592.0 28 27830.0 29 27640.0 30 30727.0 31 37499.0 32 50511.0 33 77339.0 34 121813.0 35 92884.0 36 97012.0 37 135426.0 38 147454.0 39 31909.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.78797089995339 22.06395525563864 27.697327091819158 21.45074675258881 2 36.762822461345166 20.29677589316473 29.942347052505724 12.998054592984376 3 28.224613451678927 19.23480657385454 38.65614930998845 13.884430664478083 4 25.495369526009686 25.62273289156382 33.98788173546517 14.894015846961315 5 21.234826838510955 29.190933592720935 35.64390945751515 13.930330111252964 6 19.033274565829736 37.198208604373114 32.81901635357772 10.949500476219425 7 77.12170952641499 4.976189028715019 15.111050317141872 2.7910511277281294 8 78.55279956228343 3.581474051107463 14.827649097209559 3.0380772893995585 9 74.91752284840011 5.177822360021886 16.19368958599307 3.7109652055849396 10 44.58315601758972 22.47137617281699 21.453685127768658 11.49178268182463 11 38.58177802095366 20.214805357975155 28.145175998540946 13.058240622530246 12 35.27022919326403 20.299815591626643 30.88961841651975 13.54033679858958 13 20.993170810788904 33.079721158327764 31.012016941252764 14.915091089630575 14 16.378300605913225 33.64581433521794 34.06397552029505 15.911909538573774 15 15.042961071595032 21.96506373234442 47.06365128579245 15.928323910268102 16 16.68287839179687 17.73086509818226 45.81028228666383 19.775974223357043 17 17.284232070845242 18.62129410095852 34.677184023344886 29.41728980485136 18 21.083044561979452 21.14890469532089 38.18357752244311 19.58447322025655 19 25.499321134010174 23.137374105822037 31.081018096338177 20.282286663829616 20 26.860194135408435 21.760390702575638 31.661499179281417 19.717915982734514 21 21.374754291040997 25.635398301821795 33.4561371511946 19.53371025594261 22 21.6713275376416 21.800008105862563 32.02697225768537 24.501692098810466 23 19.00044582244108 26.829189211096928 31.59685492532474 22.57351004113725 24 18.85646543862849 22.101951486412545 41.28680568220966 17.754777392749304 25 18.00464060631852 22.849008045068594 38.259266014144735 20.887085334468154 26 17.071351855229295 28.771252558412876 32.742719922183724 21.414675664174112 27 16.759985409447385 28.725454434920056 34.586702332461954 19.92785782317061 28 16.26491985328389 24.614160941901233 41.07838369100452 18.04253551381036 29 16.628265142764505 22.17439763308813 39.81224795833587 21.385089265811498 30 18.667598840861654 27.02555373173648 35.66853101505664 18.63831641234523 31 26.008875919508785 24.454678095932884 30.594970312278356 18.941475672279974 32 25.66103309218392 24.219506758262913 31.21446085881614 18.904999290737027 33 24.8666585608041 25.141751271607188 30.67045615741585 19.32113401017286 34 18.85626279206436 25.463250045595476 32.284232070845235 23.396255091494925 35 20.134354672016535 24.686911058423007 33.489675157557706 21.689059112002756 36 26.80872190812005 24.33400206699495 29.135509757432065 19.721766267452935 37 20.400632257280076 29.082112387784463 30.393336980971487 20.12391837396397 38 20.64451739720753 29.83798407198006 28.729304719638478 20.788193811173933 39 20.103856364115348 28.19705351895759 29.445153707418893 22.253936409508178 40 23.3032403185604 24.757432062739376 28.978053377104988 22.961274241595234 41 19.104302186556428 22.775447342290313 30.8078505278943 27.312399943258963 42 21.48225829331064 24.472510993576105 27.45627900378949 26.588951709323766 43 21.24850548158956 25.411271201896774 28.25602366911869 25.08419964739498 44 19.81366648428476 27.478772772407645 29.855411676495024 22.852149066812572 45 18.41054167426591 32.12505319472309 27.12900480272357 22.335400328287434 46 21.714085962672502 28.8248525746246 28.898818570531137 20.562242892171763 47 20.842604413642167 26.123979167933207 29.967880519585787 23.065535898838835 48 21.226214359535533 24.493788882809493 32.310474800899755 21.969521956755223 49 20.611182037408557 24.18434757938679 32.599448801345574 22.60502158185908 50 19.382535919103493 28.85494558939753 30.613005856485703 21.149512635013274 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 389.0 1 887.5 2 1386.0 3 12995.5 4 24605.0 5 17363.5 6 10122.0 7 10147.5 8 10173.0 9 10568.0 10 10963.0 11 10852.5 12 10742.0 13 10291.5 14 9841.0 15 9155.5 16 8470.0 17 7798.0 18 7126.0 19 6549.5 20 5973.0 21 5784.0 22 5595.0 23 5402.5 24 5210.0 25 5769.0 26 6328.0 27 7110.0 28 7892.0 29 8644.5 30 9397.0 31 11565.5 32 13734.0 33 18034.0 34 22334.0 35 23494.5 36 24655.0 37 26203.0 38 27751.0 39 34039.0 40 40327.0 41 55087.0 42 69847.0 43 78475.0 44 87103.0 45 89684.0 46 92265.0 47 87128.5 48 81992.0 49 79505.0 50 77018.0 51 71395.0 52 65772.0 53 59546.5 54 53321.0 55 47944.5 56 42568.0 57 39964.0 58 37360.0 59 33569.5 60 29779.0 61 27693.0 62 25607.0 63 22689.0 64 19771.0 65 16894.5 66 14018.0 67 11937.0 68 9856.0 69 8517.0 70 7178.0 71 5743.5 72 4309.0 73 3760.5 74 3212.0 75 2237.0 76 1262.0 77 991.5 78 721.0 79 579.5 80 438.0 81 328.0 82 218.0 83 172.0 84 126.0 85 82.5 86 39.0 87 41.5 88 44.0 89 37.0 90 30.0 91 29.0 92 28.0 93 35.0 94 42.0 95 22.0 96 2.0 97 1.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 986940.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.952231253410396 #Duplication Level Percentage of deduplicated Percentage of total 1 75.96613650466584 20.474568785018953 2 7.3579666958050405 3.9662723988045885 3 3.280195290296851 2.652257460612851 4 2.062842010230468 2.2239277959592614 5 1.5020401308001126 2.024166647861372 6 1.1446726386893136 1.851088900044352 7 0.8727876087616474 1.6466501426518498 8 0.7009851665458406 1.511449145116312 9 0.6148588725420773 1.491463666886873 >10 5.155892073963563 30.420760121487746 >50 1.0675361404004704 20.273564082327294 >100 0.2725704807577166 9.642050570932374 >500 0.0011372899058041 0.2140566287947533 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 3.7909663526803326E-4 1.6077236535014048 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15735 1.5943218432731474 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.0132328206375261E-4 0.0 0.0 0.0331327132348471 0.0 2 1.0132328206375261E-4 0.0 0.0 0.1161164812450605 0.0 3 1.0132328206375261E-4 0.0 0.0 0.16201592801994041 0.0 4 3.039698461912578E-4 0.0 0.0 0.25199100249255274 0.0 5 3.039698461912578E-4 0.0 0.0 0.4555494761586317 0.0 6 3.039698461912578E-4 0.0 0.0 0.6649847001844084 0.0 7 3.039698461912578E-4 0.0 0.0 0.8234543133321175 0.0 8 4.0529312825501044E-4 0.0 0.0 1.257320607129106 0.0 9 4.0529312825501044E-4 0.0 0.0 1.4490242567937262 0.0 10 4.0529312825501044E-4 0.0 0.0 1.7552232151903864 0.0 11 4.0529312825501044E-4 0.0 0.0 1.977729142602387 0.0 12 4.0529312825501044E-4 0.0 0.0 2.1902040650900765 0.0 13 4.0529312825501044E-4 0.0 0.0 2.2831175147425373 0.0 14 4.0529312825501044E-4 0.0 0.0 2.3163515512594484 0.0 15 4.0529312825501044E-4 0.0 0.0 2.3653920197783047 0.0 16 4.0529312825501044E-4 0.0 0.0 2.4658033923034837 0.0 17 4.0529312825501044E-4 0.0 0.0 2.586074128113158 0.0 18 4.0529312825501044E-4 0.0 0.0 2.7790949804446066 0.0 19 4.0529312825501044E-4 0.0 0.0 2.8569112610695684 0.0 20 4.0529312825501044E-4 0.0 0.0 2.944353253490587 0.0 21 4.0529312825501044E-4 0.0 0.0 3.0515532859140375 0.0 22 4.0529312825501044E-4 0.0 0.0 3.1678724137232255 0.0 23 4.0529312825501044E-4 0.0 0.0 3.291284171276876 0.0 24 5.06616410318763E-4 0.0 0.0 3.3873386426733134 0.0 25 5.06616410318763E-4 0.0 0.0 3.470221087401463 0.0 26 5.06616410318763E-4 0.0 0.0 3.5444910531541938 0.0 27 6.079396923825156E-4 0.0 0.0 3.628386730702981 0.0 28 6.079396923825156E-4 0.0 0.0 3.710154619328429 0.0 29 7.092629744462683E-4 0.0 0.0 3.8033720388270815 0.0 30 0.001013232820637526 0.0 0.0 3.9270877662269235 0.0 31 0.001013232820637526 0.0 0.0 4.038644699779115 0.0 32 0.001013232820637526 0.0 0.0 4.140373274971123 0.0 33 0.001013232820637526 0.0 0.0 4.237542302470262 0.0 34 0.001013232820637526 0.0 0.0 4.349605852432772 0.0 35 0.001013232820637526 0.0 0.0 4.487405516039476 0.0 36 0.0011145561027012787 0.0 0.0 4.590451293898312 0.0 37 0.0012158793847650313 0.0 0.0 4.701400287758121 0.0 38 0.0014185259488925365 0.0 0.0 4.828358360184003 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAATCGT 25 4.4423807E-5 44.0 12 CGCATCG 45 4.802132E-10 44.0 21 CGATTAC 35 1.4458055E-7 44.0 10 CGTTCAC 30 2.5273512E-6 44.0 21 TATTACG 30 2.5273512E-6 44.0 1 TACGTAG 45 4.802132E-10 44.0 1 CGTTTTT 10480 0.0 43.139313 1 CGGTCTA 145 0.0 42.482758 31 GGCCTAT 265 0.0 42.339622 8 CGTTGAT 245 0.0 42.204082 25 CCTATGT 265 0.0 41.509434 10 TCACGAC 160 0.0 41.250004 25 ACGGTCT 155 0.0 41.16129 30 TCGATAG 75 0.0 41.066666 1 AACGGGA 130 0.0 40.615387 4 AAGGGAC 555 0.0 40.036037 5 TACGGGA 275 0.0 40.000004 4 GTAATAG 55 7.8216544E-11 40.0 1 ACGACGG 160 0.0 39.875004 27 ACGTAAG 50 1.3478711E-9 39.600002 1 >>END_MODULE