##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546036_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1389452 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.887021645943868 31.0 28.0 33.0 22.0 33.0 2 28.63444365116607 31.0 28.0 33.0 16.0 33.0 3 28.081701994743252 31.0 26.0 33.0 16.0 34.0 4 32.25723306742514 35.0 32.0 35.0 26.0 37.0 5 33.673536041547315 35.0 33.0 35.0 28.0 37.0 6 33.502812619651486 35.0 33.0 37.0 28.0 37.0 7 34.50057936510221 35.0 35.0 37.0 32.0 37.0 8 34.83604327461474 35.0 35.0 37.0 32.0 37.0 9 36.61557794007997 39.0 37.0 39.0 32.0 39.0 10 36.106200861922545 38.0 35.0 39.0 31.0 39.0 11 36.278270138155186 38.0 35.0 39.0 31.0 39.0 12 34.91479374602361 37.0 33.0 39.0 28.0 39.0 13 35.29565109122157 37.0 34.0 39.0 29.0 39.0 14 35.94348419376848 38.0 34.0 40.0 28.0 41.0 15 36.53981785624836 38.0 35.0 40.0 31.0 41.0 16 36.13150508257932 38.0 34.0 40.0 31.0 41.0 17 35.750577205977606 37.0 34.0 40.0 30.0 41.0 18 35.437515653653385 37.0 33.0 39.0 29.0 40.0 19 34.934258254333365 37.0 33.0 39.0 27.0 41.0 20 35.29158545959126 36.0 34.0 39.0 29.0 41.0 21 35.442750811111146 36.0 34.0 39.0 30.0 40.0 22 35.89937903576374 37.0 34.0 40.0 31.0 41.0 23 36.28058328031483 37.0 35.0 40.0 31.0 41.0 24 35.83130255669141 36.0 34.0 40.0 31.0 41.0 25 35.54911648621183 36.0 34.0 40.0 30.0 41.0 26 35.70855128496702 37.0 34.0 40.0 30.0 41.0 27 36.03737372719605 37.0 35.0 40.0 31.0 41.0 28 35.938562109378374 37.0 35.0 40.0 31.0 41.0 29 36.07835751073085 37.0 35.0 40.0 31.0 41.0 30 35.74770197171259 37.0 35.0 40.0 30.0 41.0 31 35.048626364926605 36.0 34.0 40.0 29.0 41.0 32 35.08671548207495 37.0 34.0 40.0 29.0 41.0 33 34.89019196057151 37.0 34.0 40.0 27.0 41.0 34 34.56703074305553 37.0 34.0 40.0 24.0 41.0 35 34.39025745401784 37.0 34.0 40.0 23.0 41.0 36 33.99346001157291 36.0 33.0 40.0 21.0 41.0 37 33.92089543215599 36.0 33.0 40.0 21.0 41.0 38 33.77890636020532 36.0 33.0 40.0 20.0 41.0 39 33.53685913583197 36.0 33.0 40.0 19.0 41.0 40 33.34155983797929 36.0 33.0 40.0 18.0 40.0 41 33.016378399541686 35.0 33.0 39.0 18.0 40.0 42 33.19095154060738 36.0 33.0 40.0 18.0 40.0 43 32.98434706632543 35.0 33.0 39.0 18.0 40.0 44 32.86021683368695 35.0 32.0 39.0 17.0 40.0 45 32.80365784496334 35.0 32.0 39.0 18.0 40.0 46 32.626731977786925 35.0 32.0 39.0 18.0 40.0 47 32.57180600697253 35.0 32.0 39.0 18.0 40.0 48 32.57564493051937 35.0 32.0 39.0 18.0 40.0 49 32.6147790639763 35.0 32.0 39.0 18.0 40.0 50 32.803327498898845 35.0 32.0 39.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 0.0 10 6.0 11 4.0 12 10.0 13 21.0 14 52.0 15 143.0 16 355.0 17 744.0 18 1464.0 19 2460.0 20 3910.0 21 5731.0 22 8054.0 23 11424.0 24 16385.0 25 24304.0 26 33752.0 27 38826.0 28 38780.0 29 38914.0 30 43960.0 31 53219.0 32 71520.0 33 108211.0 34 166425.0 35 130825.0 36 142483.0 37 199156.0 38 209402.0 39 38910.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.495766676358734 22.184501515705474 28.08891563004695 21.230816177888837 2 35.56366106925608 20.85412090522019 30.19341438207293 13.3888036434508 3 27.76691818069282 19.758725022526864 38.75938139640664 13.714975400373671 4 25.0852134510584 25.60728978043142 34.86007433146305 14.447422437047125 5 20.993888237952802 29.42174324841736 35.86716201783149 13.717206495798342 6 19.44262918042509 37.25000935620662 32.82970552419227 10.47765593917602 7 78.0570325567202 4.756479532938165 14.565022757173333 2.6214651531682995 8 79.41720908674786 3.396806798651555 14.177243978201478 3.008740136399098 9 75.81183085129965 4.84608320402576 15.594205485328027 3.747880459346563 10 43.53666049636835 21.901656192513308 22.02069592904253 12.54098738207581 11 37.622098496385625 21.66652752308104 27.105218460227487 13.606155520305846 12 33.80728517429893 20.419920947251146 30.565431551431786 15.207362327018133 13 21.443777834714695 31.127091831887682 31.3520726156787 16.07705771771893 14 16.884210465708783 32.42127111983717 34.17390453214649 16.520613882307558 15 16.259575717621047 21.94224773507829 45.80359738947441 15.99457915782625 16 18.700322141390995 18.97352337468297 43.65965862800586 18.666495855920175 17 18.912995914936246 19.348851201768756 33.950723018859236 27.787429864435765 18 22.333409142597223 21.718922280150736 36.69820907811137 19.24945949914067 19 25.845513195130167 23.402895530036304 31.147027749069416 19.604563525764114 20 27.15235934742618 22.90831205396084 30.3808263977453 19.558502200867682 21 21.784631638948305 25.53438333961878 33.104993911268615 19.575991110164296 22 21.71949804671194 21.747278783290103 32.89865356989662 23.634569600101337 23 19.76952064554947 25.930438762907965 32.12208842047081 22.17795217107176 24 19.887408848956277 22.24272590920737 39.12758411229751 18.74228112953884 25 19.738429251244373 22.356655717505895 37.06425266939772 20.84066236185201 26 17.803637693133695 28.040407297265396 32.50216632168654 21.65378868791437 27 18.164355443728894 27.589150254920646 34.27387200133578 19.97262230001468 28 16.7690571534677 24.89074829501127 39.08504935758846 19.25514519393257 29 17.569876469284292 23.832345413875398 37.86406439373221 20.733713723108103 30 20.451732049757744 24.610853775445282 35.61260122695854 19.324812947838428 31 25.810247493256334 23.137611086960902 31.351856703218246 19.700284716564518 32 26.462878890382687 23.724964950210587 31.16962658659673 18.64252957281 33 24.755443153127995 24.398827739281387 30.12007611633939 20.725652991251227 34 19.213690001525784 25.45125704234475 32.78601923636081 22.54903371976866 35 20.31210865866543 25.27715962840026 32.657623293212 21.75310841972231 36 25.871854515305316 25.10191068133336 29.095499520674338 19.93073528268699 37 20.208254765188002 29.40994003391265 30.033135365597374 20.348669835301976 38 22.039336371461555 28.927879480543407 28.078120007024353 20.954664140970685 39 21.105443009186356 27.772747817125026 28.732262791373863 22.389546382314755 40 24.001045016308588 24.493541338599677 28.87735596479763 22.6280576802941 41 19.627090392471278 23.309189522200118 29.938421766279077 27.125298319049524 42 22.293465337413597 24.364713570529965 27.92079179417497 25.421029297881464 43 21.71417220602079 24.717082705987682 28.785089373364464 24.783655714627063 44 20.729827298819966 27.193958481473274 30.009600907408103 22.06661331229866 45 19.50977795562567 30.407671513661498 27.01547084749959 23.067079683213237 46 21.374685847370042 28.26250924825039 29.127454564821235 21.23535033955833 47 21.073056140118553 25.691063815086814 30.07005639633467 23.16582364845997 48 21.692077164234533 24.64000195760631 31.8721337620875 21.79578711607166 49 21.338844378935004 23.761526126847134 32.29093196454429 22.60869752967357 50 19.315672653679293 28.071282779110035 30.160595688084225 22.452448879126447 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 570.0 1 1295.0 2 2020.0 3 18779.0 4 35538.0 5 24614.0 6 13690.0 7 13500.5 8 13311.0 9 13897.0 10 14483.0 11 14317.5 12 14152.0 13 13412.5 14 12673.0 15 11814.5 16 10956.0 17 10249.5 18 9543.0 19 8926.0 20 8309.0 21 7781.5 22 7254.0 23 7227.5 24 7201.0 25 7691.5 26 8182.0 27 9833.5 28 11485.0 29 13574.5 30 15664.0 31 18369.5 32 21075.0 33 24094.0 34 27113.0 35 29253.0 36 31393.0 37 35810.0 38 40227.0 39 48662.5 40 57098.0 41 71075.0 42 85052.0 43 99087.0 44 113122.0 45 117756.5 46 122391.0 47 119098.5 48 115806.0 49 114881.0 50 113956.0 51 106194.5 52 98433.0 53 87717.5 54 77002.0 55 71199.0 56 65396.0 57 62901.0 58 60406.0 59 55284.5 60 50163.0 61 44446.0 62 38729.0 63 33110.0 64 27491.0 65 23448.5 66 19406.0 67 16798.5 68 14191.0 69 11696.0 70 9201.0 71 8009.5 72 6818.0 73 5582.0 74 4346.0 75 3580.5 76 2815.0 77 2016.0 78 1217.0 79 1017.5 80 818.0 81 576.0 82 334.0 83 284.5 84 235.0 85 159.0 86 83.0 87 62.0 88 41.0 89 38.0 90 35.0 91 22.0 92 9.0 93 9.5 94 10.0 95 7.5 96 5.0 97 4.5 98 4.0 99 2.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1389452.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.795100927069594 #Duplication Level Percentage of deduplicated Percentage of total 1 76.375631658949 20.4649275867023 2 7.373763328937392 3.951614652224041 3 3.0387318804543697 2.4426938228123642 4 1.9038246416068723 2.0405269367719296 5 1.4046640050783805 1.8819056892348502 6 1.0835785067216304 1.7420757270005667 7 0.8433896668970227 1.5819097871747325 8 0.711445213781946 1.5250597045894276 9 0.5691567317981462 1.3725550864667166 >10 5.323463393243574 31.003685652716495 >50 1.1055007340714982 20.772679803617592 >100 0.26549978178997113 9.381122716428528 >500 8.102740020407094E-4 0.11485316667865281 >1k 2.7009133401356987E-4 0.07468712540161922 >5k 0.0 0.0 >10k+ 2.7009133401356987E-4 1.6497025421801452 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 22795 1.6405748453347075 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 7.197082015067812E-5 0.0 0.0 0.036489205816393804 0.0 2 7.197082015067812E-5 0.0 0.0 0.13861579961020604 0.0 3 7.197082015067812E-5 0.0 0.0 0.19209011898215989 0.0 4 7.197082015067812E-5 0.0 0.0 0.30918664336731316 0.0 5 1.4394164030135623E-4 0.0 0.0 0.5613004263551385 0.0 6 1.4394164030135623E-4 0.0 0.0 0.8306872061791267 0.0 7 1.4394164030135623E-4 0.0 0.0 1.035444189507806 0.0 8 1.4394164030135623E-4 0.0 0.0 1.5755851947386452 0.0 9 1.4394164030135623E-4 0.0 0.0 1.8138086094373898 0.0 10 2.1591246045203432E-4 0.0 0.0 2.18848869914182 0.0 11 2.1591246045203432E-4 0.0 0.0 2.458739128807616 0.0 12 2.1591246045203432E-4 0.0 0.0 2.7236637177822622 0.0 13 2.8788328060271246E-4 0.0 0.0 2.8244228659932116 0.0 14 2.8788328060271246E-4 0.0 0.0 2.859040830485688 0.0 15 2.8788328060271246E-4 0.0 0.0 2.9096363170516146 0.0 16 2.8788328060271246E-4 0.0 0.0 3.0117629108454267 0.0 17 3.5985410075339055E-4 0.0 0.0 3.1292192893313335 0.0 18 3.5985410075339055E-4 0.0 0.0 3.323180649637411 0.0 19 3.5985410075339055E-4 0.0 0.0 3.4024205226233075 0.0 20 3.5985410075339055E-4 0.0 0.0 3.4992212757259695 0.0 21 3.5985410075339055E-4 0.0 0.0 3.6195564870179036 0.0 22 3.5985410075339055E-4 0.0 0.0 3.744209947518878 0.0 23 3.5985410075339055E-4 0.0 0.0 3.8766362565961257 0.0 24 4.3182492090406864E-4 0.0 0.0 3.9754521926630066 0.0 25 4.3182492090406864E-4 0.0 0.0 4.058938344037793 0.0 26 4.3182492090406864E-4 0.0 0.0 4.143863911815593 0.0 27 4.3182492090406864E-4 0.0 0.0 4.235194882586804 0.0 28 5.037957410547468E-4 0.0 0.0 4.325662203516206 0.0 29 5.037957410547468E-4 0.0 0.0 4.433762375382525 0.0 30 5.037957410547468E-4 0.0 0.0 4.57554489107936 0.0 31 5.037957410547468E-4 0.0 0.0 4.692929298745117 0.0 32 5.037957410547468E-4 0.0 0.0 4.803332536856257 0.0 33 5.037957410547468E-4 0.0 0.0 4.916686578593575 0.0 34 5.757665612054249E-4 0.0 0.0 5.035870256763098 0.0 35 5.757665612054249E-4 0.0 0.0 5.170527661265017 0.0 36 5.757665612054249E-4 0.0 0.0 5.288271923031526 0.0 37 5.757665612054249E-4 0.0 0.0 5.409758667445871 0.0 38 5.757665612054249E-4 0.0 0.0 5.573348341648362 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGATAG 55 1.8189894E-12 44.000004 1 TCGCTAA 30 2.5281006E-6 44.0 2 CGACGGT 205 0.0 42.926826 28 CGTTTTT 13795 0.0 42.8996 1 AGTACGG 150 0.0 42.533333 2 TCGTAAG 75 0.0 41.066666 1 CGGTCTA 210 0.0 40.857143 31 CGTTAGG 260 0.0 40.615383 2 CGTAAGG 190 0.0 40.526314 2 TCACGAC 220 0.0 40.000004 25 AGGGTAC 605 0.0 39.272728 6 CACAACG 285 0.0 38.596493 12 TACGTAG 80 0.0 38.5 1 GTAGGGT 595 0.0 38.45378 4 GTTTTTT 15935 0.0 38.408535 2 TAGGGTA 665 0.0 38.37594 5 TAGACGG 115 0.0 38.26087 2 ATGCGTC 35 7.2913062E-6 37.714287 28 ACGGTCT 230 0.0 37.304348 30 ACGTTAG 65 1.0913936E-11 37.230766 1 >>END_MODULE