##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546034_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1179750 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.594587836406017 28.0 23.0 30.0 16.0 33.0 2 25.845008688281414 30.0 23.0 31.0 10.0 33.0 3 26.137377410468318 30.0 25.0 31.0 16.0 33.0 4 28.243682136045773 32.0 19.0 35.0 10.0 37.0 5 31.11888111888112 33.0 30.0 35.0 19.0 37.0 6 29.59650010595465 33.0 28.0 35.0 17.0 37.0 7 29.539771985590168 32.0 28.0 35.0 17.0 35.0 8 32.35083958465777 33.0 32.0 35.0 28.0 35.0 9 26.84156982411528 30.0 23.0 34.0 10.0 35.0 10 31.017318075863532 34.0 27.0 37.0 17.0 37.0 11 33.39323755032846 35.0 32.0 37.0 27.0 39.0 12 32.826648018648015 35.0 31.0 37.0 23.0 39.0 13 33.12795931341386 35.0 31.0 37.0 23.0 39.0 14 32.77862089425726 35.0 30.0 38.0 21.0 40.0 15 31.684687433778343 34.0 27.0 38.0 18.0 40.0 16 30.250038567493114 33.0 26.0 37.0 17.0 40.0 17 30.410141131595676 32.0 26.0 37.0 17.0 40.0 18 31.33565840220386 34.0 27.0 37.0 17.0 39.0 19 30.996914600550966 34.0 27.0 37.0 18.0 39.0 20 31.775424454333546 34.0 29.0 37.0 19.0 39.0 21 32.641018859927954 34.0 31.0 37.0 23.0 39.0 22 33.128518753973296 35.0 31.0 37.0 25.0 39.0 23 34.408407713498626 35.0 33.0 38.0 28.0 40.0 24 34.05830726848909 35.0 33.0 38.0 27.0 40.0 25 32.86929095147277 35.0 31.0 38.0 23.0 40.0 26 26.599543971180335 33.0 21.0 36.0 0.0 39.0 27 29.850598855689764 34.0 24.0 37.0 15.0 39.0 28 31.273714770078406 34.0 28.0 37.0 19.0 39.0 29 32.574458147912694 35.0 30.0 37.0 23.0 39.0 30 32.390217418944694 35.0 30.0 38.0 22.0 39.0 31 31.182586141131594 34.0 29.0 37.0 19.0 39.0 32 31.576016952744226 34.0 30.0 37.0 19.0 39.0 33 31.381466412375502 34.0 30.0 37.0 18.0 39.0 34 31.428244119516847 34.0 30.0 37.0 18.0 39.0 35 30.717467260012715 34.0 29.0 37.0 15.0 39.0 36 30.500593346047893 34.0 28.0 37.0 13.0 39.0 37 30.601328247510065 34.0 29.0 37.0 12.0 39.0 38 30.328505191777918 34.0 28.0 37.0 12.0 39.0 39 30.194816698453064 34.0 27.0 37.0 10.0 39.0 40 30.087019283746557 34.0 27.0 37.0 11.0 39.0 41 29.458500529773257 33.0 26.0 36.0 10.0 38.0 42 29.625445221445222 33.0 26.0 36.0 10.0 38.0 43 29.162817546090274 33.0 26.0 36.0 10.0 38.0 44 28.99520915448188 33.0 26.0 36.0 10.0 38.0 45 28.51633142614961 32.0 24.0 35.0 10.0 38.0 46 28.103271879635518 31.0 23.0 35.0 9.0 38.0 47 28.147823691460054 32.0 23.0 35.0 10.0 38.0 48 28.203977113795297 32.0 24.0 35.0 10.0 38.0 49 28.043545666454758 31.0 24.0 35.0 9.0 38.0 50 29.966650561559653 34.0 27.0 37.0 10.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 9.0 11 25.0 12 63.0 13 183.0 14 402.0 15 907.0 16 1838.0 17 3335.0 18 5437.0 19 8550.0 20 12100.0 21 17007.0 22 22750.0 23 29453.0 24 37889.0 25 46917.0 26 55583.0 27 62681.0 28 71405.0 29 84045.0 30 100359.0 31 117431.0 32 128188.0 33 128198.0 34 111790.0 35 84050.0 36 40961.0 37 7987.0 38 205.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.48061029879212 23.08353464717101 27.921847849120578 22.514007204916293 2 35.360796778978596 17.904979868616234 32.24700148336512 14.48722186904005 3 29.264505191777918 15.10947234583598 40.65183301546938 14.97418944691672 4 26.467810976901884 25.326891290527655 33.86217418944691 14.343123543123543 5 20.21360457724094 29.696800169527442 36.73117185844458 13.35842339478703 6 19.44276329730875 35.642975206611574 34.186564950201316 10.727696545878365 7 80.86501377410468 3.0999788090697185 14.366094511549058 1.6689129052765417 8 82.85611358338632 1.8297096842551388 13.544988344988345 1.7691883873702057 9 70.12078830260648 2.8873066327611783 13.803771985590169 13.188133079042169 10 44.670904852723034 21.833100233100232 22.04204280567917 11.453952108497562 11 38.65132443314261 21.33824962915872 27.242636151727062 12.767789785971603 12 34.49518965882602 20.698792116973934 30.95528713710532 13.850731087094722 13 20.851197287560925 32.07128628946811 31.532273786819243 15.545242636151727 14 16.27200678109769 32.73752913752914 34.78626827717737 16.204195804195802 15 14.700063572790844 20.318033481669843 46.02085187539733 18.96105107014198 16 16.795168467895742 16.91256622165713 43.968891714346256 22.32337359610087 17 18.008815426997245 18.398813307904216 34.751430387794024 28.840940877304515 18 21.852256834075014 21.282559864378044 37.79478703115067 19.07039627039627 19 26.443399025217207 22.60631489722399 31.884212756940027 19.066073320618777 20 27.85912269548633 22.409832591650776 30.94536978173342 18.785674931129474 21 21.5659249841068 25.297647806738716 33.55660097478279 19.579826234371687 22 21.39571943208307 21.38537825810553 33.20559440559441 24.013307904216997 23 19.138885357067174 25.969824115278662 32.72210214028396 22.169188387370205 24 19.132443314261497 21.4974358974359 41.14431023521933 18.22581055308328 25 19.102691248145792 21.155244755244755 38.89374867556686 20.848315321042595 26 14.17062937062937 40.160033905488454 27.18177579995762 18.48756092392456 27 17.28951048951049 28.498410680228865 34.86620046620047 19.34587836406018 28 16.130451366815002 24.650137741046834 40.61970756516211 18.599703326976055 29 16.809663064208518 23.593388429752064 39.14388641661369 20.453062089425725 30 19.907522780250055 24.57868192413647 36.42068234795507 19.0931129476584 31 26.63860987497351 22.74583598219962 31.72985802076711 18.88569612205976 32 26.83738080101716 23.016656071201524 31.80682347955075 18.339139648230557 33 25.041152786607334 24.014918414918416 30.47086247086247 20.473066327611782 34 18.85619834710744 24.97995337995338 32.92570459843187 23.23814367450731 35 20.25081585081585 24.74575121847849 32.94714981987709 22.056283110828563 36 26.22962492053401 24.592583174401355 28.975799957618136 20.201991947446494 37 19.635092180546724 29.95583810129265 29.81114642932825 20.59792328883238 38 21.342996397541853 29.746217418944692 27.91311718584446 20.997668997669 39 20.653697817334184 28.191142191142195 28.544776435685527 22.6103835558381 40 24.071031998304726 24.088323797414706 28.76728120364484 23.073363000635727 41 19.069972451790633 22.701843610934517 29.946175037084128 28.282008900190718 42 21.639330366603094 23.81106166560712 27.122865013774106 27.42674295401568 43 21.21152786607332 24.129688493324856 28.72201737656283 25.93676626403899 44 20.004068658614113 26.846874337783426 30.29921593557957 22.849841068022887 45 18.92350074168256 31.393176520449245 26.490188599279506 23.193134138588682 46 20.676499258317442 28.217842763297305 28.846535282898923 22.259122695486333 47 20.597753761390123 25.207120152574696 29.67501589319771 24.520110192837468 48 20.89747827929646 24.18054672600127 32.66759906759907 22.2543759271032 49 20.856198347107437 23.694426785335875 32.10197075651621 23.347404111040472 50 18.870777707141343 28.59368510277601 30.1168044077135 22.418732782369148 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 309.0 1 776.0 2 1243.0 3 11082.5 4 20922.0 5 16539.5 6 12157.0 7 11933.5 8 11710.0 9 12162.5 10 12615.0 11 12966.5 12 13318.0 13 13122.5 14 12927.0 15 12474.5 16 12022.0 17 11540.5 18 11059.0 19 10517.0 20 9975.0 21 9427.5 22 8880.0 23 8615.0 24 8350.0 25 8371.5 26 8393.0 27 9474.0 28 10555.0 29 12598.0 30 14641.0 31 16826.5 32 19012.0 33 21353.5 34 23695.0 35 25251.5 36 26808.0 37 29799.0 38 32790.0 39 39629.0 40 46468.0 41 57666.5 42 68865.0 43 80602.0 44 92339.0 45 95792.5 46 99246.0 47 97150.0 48 95054.0 49 93214.0 50 91374.0 51 86778.0 52 82182.0 53 74201.5 54 66221.0 55 61657.5 56 57094.0 57 54572.5 58 52051.0 59 47889.0 60 43727.0 61 38905.5 62 34084.0 63 29464.0 64 24844.0 65 21273.0 66 17702.0 67 15098.5 68 12495.0 69 10761.5 70 9028.0 71 7646.5 72 6265.0 73 5149.5 74 4034.0 75 3286.5 76 2539.0 77 1873.0 78 1207.0 79 985.0 80 763.0 81 569.0 82 375.0 83 293.5 84 212.0 85 155.5 86 99.0 87 75.0 88 51.0 89 41.0 90 31.0 91 23.0 92 15.0 93 9.0 94 3.0 95 2.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1179750.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.51970021453524 #Duplication Level Percentage of deduplicated Percentage of total 1 81.52370176776158 34.66363359544399 2 7.278331012138774 6.189449053965911 3 2.8433773892630017 3.6269866256475214 4 1.567189400242847 2.6654569391089256 5 1.060438477813176 2.254476308628716 6 0.7293220726627393 1.86063335336779 7 0.5553238007851412 1.6528541071966347 8 0.4568853305049309 1.5541301828390812 9 0.36622103778854004 1.4014447865122233 >10 3.1709348426564983 28.717109642828525 >50 0.3976519502492004 11.33047698302167 >100 0.05040658087937067 2.985128141325362 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 2.1633725418494288E-4 1.0982202801136982 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11939 1.011994066539521 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.02941301123119305 0.0 2 0.0 0.0 0.0 0.11934731934731935 0.0 3 0.0 0.0 0.0 0.16266158084339902 0.0 4 0.0 0.0 0.0 0.23208306844670482 0.0 5 0.0 0.0 0.0 0.3882178427632973 0.0 6 0.0 0.0 0.0 0.5452850180122908 0.0 7 0.0 0.0 0.0 0.6625980080525535 0.0 8 0.0 0.0 0.0 0.9888535706717525 0.0 9 0.0 0.0 0.0 1.1635515999152364 0.0 10 0.0 0.0 0.0 1.4135198135198135 0.0 11 0.0 0.0 0.0 1.5995761813943632 0.0 12 0.0 0.0 0.0 1.7666454757363848 0.0 13 0.0 0.0 0.0 1.834710743801653 0.0 14 0.0 0.0 0.0 1.8559016740834922 0.0 15 0.0 0.0 0.0 1.8856537401991948 0.0 16 0.0 0.0 0.0 1.9460902733630006 0.0 17 0.0 0.0 0.0 2.0311930493748678 0.0 18 0.0 0.0 0.0 2.147743165924984 0.0 19 0.0 0.0 0.0 2.1936003390548846 0.0 20 0.0 0.0 0.0 2.2537825810553085 0.0 21 0.0 0.0 0.0 2.3196439923712653 0.0 22 0.0 0.0 0.0 2.3910998092816276 0.0 23 0.0 0.0 0.0 2.4641661368934096 0.0 24 0.0 0.0 0.0 2.5234159779614327 0.0 25 0.0 0.0 0.0 2.571900826446281 0.0 26 0.0 0.0 0.0 2.6170798898071626 0.0 27 0.0 0.0 0.0 2.6777707141343505 0.0 28 0.0 0.0 0.0 2.7474464929010383 0.0 29 0.0 0.0 0.0 2.8291587200678108 0.0 30 0.0 0.0 0.0 2.9339266793812246 0.0 31 0.0 0.0 0.0 3.021402839584658 0.0 32 0.0 0.0 0.0 3.1037931765204494 0.0 33 0.0 0.0 0.0 3.190760754397118 0.0 34 0.0 0.0 0.0 3.2748463657554567 0.0 35 0.0 0.0 0.0 3.3791057427421065 0.0 36 0.0 0.0 0.0 3.472684890866709 0.0 37 0.0 0.0 0.0 3.5636363636363635 0.0 38 0.0 0.0 0.0 3.682983682983683 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGATAG 65 0.0 44.000004 1 GGTACGA 20 7.8565674E-4 44.0 38 TAAGTCG 25 4.442912E-5 44.0 18 CGTTTTT 12435 0.0 43.168476 1 ACGGTCT 150 0.0 42.533333 30 CGATAGG 145 0.0 40.96552 2 CGGTATA 55 7.8216544E-11 40.0 43 CGGTCTA 160 0.0 39.875 31 ATACCGG 45 2.3510438E-8 39.11111 2 GTTTTTT 14080 0.0 39.109375 2 CGTAGGC 85 0.0 38.82353 3 CGGAATT 420 0.0 38.761906 9 CGACGGT 165 0.0 38.666668 28 TAGGGTA 560 0.0 38.5 5 GGCGGGA 1850 0.0 37.816216 7 CTATTCG 35 7.2903695E-6 37.714287 44 CTCGTCC 310 0.0 37.6129 37 GACGGTC 170 0.0 37.52941 29 CGGGAAT 1620 0.0 37.48148 9 ATCGTAG 60 1.9826984E-10 36.666664 1 >>END_MODULE