##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546033_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 902565 Sequences flagged as poor quality 0 Sequence length 50 %GC 40 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.263989851146455 31.0 28.0 33.0 25.0 33.0 2 28.845729670439248 31.0 28.0 33.0 16.0 33.0 3 28.18074044528649 31.0 27.0 33.0 16.0 34.0 4 31.916475821685975 35.0 32.0 35.0 25.0 37.0 5 33.63949854027134 35.0 33.0 35.0 28.0 37.0 6 33.5333477367281 35.0 33.0 37.0 28.0 37.0 7 34.214797826195344 35.0 33.0 37.0 30.0 37.0 8 34.7709605402381 35.0 35.0 37.0 32.0 37.0 9 36.65710059663293 39.0 37.0 39.0 32.0 39.0 10 36.5144349714425 39.0 35.0 39.0 32.0 39.0 11 36.432290195166 39.0 35.0 39.0 32.0 39.0 12 35.13066427348723 37.0 34.0 39.0 30.0 39.0 13 34.80782547517353 37.0 33.0 39.0 26.0 39.0 14 35.657811902743845 38.0 33.0 40.0 27.0 41.0 15 36.39669497487716 38.0 35.0 40.0 31.0 41.0 16 36.09001456958779 37.0 34.0 40.0 31.0 41.0 17 35.6570341194263 37.0 34.0 40.0 30.0 41.0 18 35.28548968772332 36.0 34.0 39.0 29.0 40.0 19 34.68349426357104 36.0 33.0 39.0 27.0 40.0 20 34.951446156232514 35.0 34.0 39.0 29.0 40.0 21 35.0976827153723 35.0 34.0 39.0 30.0 40.0 22 35.42479489011872 35.0 34.0 39.0 31.0 40.0 23 35.76352617263023 35.0 34.0 39.0 31.0 41.0 24 35.43413936946369 35.0 34.0 39.0 31.0 41.0 25 35.0640264136101 35.0 34.0 39.0 30.0 41.0 26 35.11029344146959 35.0 34.0 39.0 30.0 41.0 27 35.38747015450411 35.0 34.0 39.0 31.0 41.0 28 35.36424966622903 35.0 34.0 40.0 31.0 41.0 29 35.51700874729244 36.0 35.0 40.0 31.0 41.0 30 35.113273836233404 35.0 34.0 40.0 30.0 41.0 31 34.35778586583792 35.0 34.0 39.0 27.0 40.0 32 34.06723504678333 35.0 33.0 39.0 24.0 40.0 33 33.56310404236814 35.0 33.0 39.0 21.0 41.0 34 33.07428163068588 35.0 33.0 40.0 18.0 41.0 35 32.66379485134035 35.0 33.0 40.0 15.0 41.0 36 32.17909181056212 35.0 32.0 39.0 10.0 41.0 37 32.02803122212805 35.0 31.0 39.0 10.0 41.0 38 31.918486757186464 35.0 31.0 39.0 10.0 40.0 39 31.77340911734889 35.0 31.0 39.0 10.0 40.0 40 31.577864198146393 35.0 31.0 39.0 10.0 40.0 41 31.347141757103365 35.0 30.0 38.0 10.0 40.0 42 31.482501537285405 35.0 31.0 39.0 10.0 40.0 43 31.251157534360406 35.0 30.0 38.0 9.0 40.0 44 31.018785350639565 35.0 30.0 38.0 8.0 40.0 45 30.948056926647943 35.0 30.0 38.0 8.0 40.0 46 30.8052771822528 35.0 29.0 38.0 8.0 40.0 47 30.78715549572607 35.0 30.0 38.0 8.0 40.0 48 30.835499936292678 35.0 30.0 38.0 8.0 40.0 49 30.847333987025866 35.0 30.0 38.0 8.0 40.0 50 30.89840953283143 35.0 29.0 39.0 8.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 0.0 11 2.0 12 5.0 13 15.0 14 43.0 15 112.0 16 281.0 17 599.0 18 1285.0 19 2262.0 20 3439.0 21 5136.0 22 7412.0 23 10429.0 24 15610.0 25 23825.0 26 33158.0 27 35990.0 28 32181.0 29 28857.0 30 30139.0 31 35408.0 32 48650.0 33 76539.0 34 127212.0 35 76871.0 36 69813.0 37 98392.0 38 113121.0 39 25777.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 24.509592106939667 21.57650695517774 26.966811254591082 26.94708968329151 2 39.60501459728662 20.406286527840102 28.95403655138411 11.034662323489167 3 25.117082980173173 18.720202977070905 44.360239982715925 11.802474060039996 4 22.589397993496313 24.02187100098054 40.768033327239586 12.620697678283557 5 18.94799820511542 27.84032174968008 41.45053264861811 11.761147396586395 6 17.37559067767972 34.043309900118 38.7398137530261 9.84128566917618 7 72.7646208306327 4.312708779977066 20.701445325267432 2.2212250641228057 8 74.2919346529059 3.0275935805177467 20.30180651809011 2.3786652484862585 9 71.22146327411322 4.591359071091833 21.19293347293547 2.9942441818594783 10 46.40386010979818 21.21354140699008 24.5659869372289 7.816611545982838 11 42.24150061214428 15.948879028103239 32.42669503027483 9.382925329477656 12 37.99150199708608 18.479777079767107 33.099222770659175 10.429498152487632 13 17.730911347105195 38.1523768371253 33.80100048195975 10.315711333809753 14 12.134084525768227 38.555228709289636 37.24241467373541 12.068272091206728 15 10.94957149900561 19.033310620287736 58.664029737470436 11.35308814323622 16 12.642967542503863 15.729393450887194 55.70457529374616 15.923063712862787 17 13.39648667962972 15.809166098840526 38.708901851944184 32.08544536958557 18 18.30682554719051 20.0233778176641 44.44411205841131 17.225684576734086 19 24.793671369929037 20.56450227961421 36.967199038296414 17.674627312160343 20 26.31832610393711 20.34014170724546 35.72318891160193 17.61834327721549 21 17.66011312204661 25.14666533712254 38.791665974195766 18.40155556663509 22 18.97536465517719 20.891237750189738 35.92838188939301 24.205015705240065 23 15.637544110396481 26.39676920775789 35.70169461479228 22.263992067053344 24 16.021339183327516 19.415554558397456 50.0853678128445 14.477738445430525 25 13.22630503066261 21.850947023206086 45.99668721920305 18.926060726928252 26 13.429392896910471 30.612642856747158 38.772276788929325 17.18568745741304 27 13.997883808922348 30.518356018680095 39.48679596483356 15.996964207563998 28 11.868508085290257 24.20390775179627 49.415609956069645 14.511974206843828 29 12.724956097344789 20.67817830294771 47.00160099272628 19.595264606981214 30 15.823015516887981 26.302593165035205 41.433359370239266 16.44103194783755 31 25.76567892617152 22.288810224194382 35.69560087085141 16.249909978782693 32 26.82399605568574 21.97426224150061 36.264645759585186 14.937095943228465 33 24.72121121470476 23.46955620924809 34.291159085495224 17.518073490551927 34 17.372377612692716 24.180529934132167 36.08637605047836 22.36071640269676 35 18.433243035127663 24.032396558696604 37.69534604155933 19.839014364616396 36 27.900151235645076 22.92455391024469 31.84003368178469 17.335261172325538 37 18.352694819763673 30.832017638618826 33.81739819292793 16.99788934868957 38 19.550724878540603 30.42373679457989 30.003933234725476 20.021605092154026 39 19.687224742816305 29.096851750289453 31.931439840897884 19.284483665996355 40 22.71570468608909 24.43103820777451 30.569654263127866 22.283602843008538 41 16.11617999811648 23.303363192678646 32.305263332834755 28.275193476370124 42 21.46659797355315 23.299374560280977 28.544536958557003 26.68949050760887 43 21.803415820467222 24.32954967232277 29.52529734700548 24.341737160204527 44 18.500828195199237 29.239334563161655 31.121193487449656 21.13864375418945 45 16.374000764487874 35.60840493482464 26.24752787887853 21.770066421808956 46 20.723936780176498 30.035177521840534 29.5240785982173 19.716807099765667 47 20.046312453950684 24.99631605479938 31.38499720241755 23.572374288832386 48 21.680876169583353 21.85227656733864 35.180956496208026 21.285890766869976 49 20.223917390991232 22.32359996232958 34.57102812539817 22.881454521281018 50 18.070499077628757 30.952008996581963 30.214222798358016 20.763269127431265 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 439.0 1 594.0 2 749.0 3 12870.0 4 24991.0 5 18758.5 6 12526.0 7 13389.5 8 14253.0 9 15247.5 10 16242.0 11 16671.5 12 17101.0 13 16353.5 14 15606.0 15 14734.5 16 13863.0 17 12966.5 18 12070.0 19 11016.5 20 9963.0 21 9220.5 22 8478.0 23 7851.5 24 7225.0 25 6816.5 26 6408.0 27 7384.5 28 8361.0 29 8909.0 30 9457.0 31 11027.0 32 12597.0 33 14500.5 34 16404.0 35 19504.5 36 22605.0 37 23060.0 38 23515.0 39 32303.5 40 41092.0 41 57167.5 42 73243.0 43 83419.5 44 93596.0 45 93934.5 46 94273.0 47 86869.0 48 79465.0 49 73433.5 50 67402.0 51 61057.5 52 54713.0 53 48061.5 54 41410.0 55 35236.0 56 29062.0 57 26119.0 58 23176.0 59 20234.5 60 17293.0 61 14910.0 62 12527.0 63 10491.0 64 8455.0 65 6826.0 66 5197.0 67 4183.0 68 3169.0 69 2593.5 70 2018.0 71 1740.0 72 1462.0 73 1150.5 74 839.0 75 722.0 76 605.0 77 484.0 78 363.0 79 258.5 80 154.0 81 139.0 82 124.0 83 80.5 84 37.0 85 27.0 86 17.0 87 11.5 88 6.0 89 4.5 90 3.0 91 5.0 92 7.0 93 4.5 94 2.0 95 2.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 902565.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.104359403403784 #Duplication Level Percentage of deduplicated Percentage of total 1 79.82740088539398 23.233253656081 2 6.765130493356933 3.9378957857917305 3 2.8378747374300666 2.477835789000144 4 1.714182198061796 1.995606991012288 5 1.210024519266588 1.7608494247832833 6 0.9008983876754112 1.5732042276511295 7 0.6599778719313807 1.344576322808915 8 0.5515735171325362 1.2842555104019864 9 0.4382381314276198 1.1479176073210995 >10 3.7450731871986087 23.877628543587313 >50 0.9466842762299776 19.47974937176141 >100 0.40179707388689184 15.854483881471182 >500 3.815736694082543E-4 0.06707696156853382 >1k 3.815736694082543E-4 0.14792469008160108 >5k 0.0 0.0 >10k+ 3.815736694082543E-4 1.8177412366784131 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16368 1.8134981968057702 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1332 0.14757939871366607 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.1079534437962917E-4 0.0 0.0 0.04830677014951832 0.0 2 1.1079534437962917E-4 0.0 0.0 0.1750566441198141 0.0 3 1.1079534437962917E-4 0.0 0.0 0.2441929390127027 0.0 4 1.1079534437962917E-4 0.0 0.0 0.36307634353204477 0.0 5 1.1079534437962917E-4 0.0 0.0 0.6179056356051918 0.0 6 1.1079534437962917E-4 0.0 0.0 0.8433741614177372 0.0 7 1.1079534437962917E-4 0.0 0.0 1.00092514112557 0.0 8 1.1079534437962917E-4 0.0 0.0 1.4279303983646607 0.0 9 1.1079534437962917E-4 0.0 0.0 1.62237622775091 0.0 10 1.1079534437962917E-4 0.0 0.0 1.9834582550841213 0.0 11 1.1079534437962917E-4 0.0 0.0 2.2798358012996296 0.0 12 1.1079534437962917E-4 0.0 0.0 2.5451906510888413 0.0 13 4.431813775185167E-4 0.0 0.0 2.648341116706276 0.0 14 5.539767218981458E-4 0.0 0.0 2.6846819896627943 0.0 15 5.539767218981458E-4 0.0 0.0 2.741630796673924 0.0 16 6.64772066277775E-4 0.0 0.0 2.875360777340136 0.0 17 6.64772066277775E-4 0.0 0.0 3.0374543661675335 0.0 18 6.64772066277775E-4 0.0 0.0 3.2917296815187824 0.0 19 8.863627550370334E-4 0.0 0.0 3.3904483333610322 0.0 20 9.971580994166626E-4 0.0 0.0 3.5037919706613927 0.0 21 9.971580994166626E-4 0.0 0.0 3.6499310298981236 0.0 22 9.971580994166626E-4 0.0 0.0 3.793189410180984 0.0 23 9.971580994166626E-4 0.0 0.0 3.9600471988167056 0.0 24 0.0011079534437962917 0.0 0.0 4.07516356162714 0.0 25 0.0011079534437962917 0.0 0.0 4.171112329859899 0.0 26 0.0011079534437962917 0.0 0.0 4.2671718934370375 0.0 27 0.0011079534437962917 0.0 0.0 4.359575210649648 0.0 28 0.0011079534437962917 0.0 0.0 4.4545268207829904 0.0 29 0.0011079534437962917 0.0 0.0 4.561111942076194 0.0 30 0.0011079534437962917 0.0 0.0 4.708802136134239 0.0 31 0.0011079534437962917 0.0 0.0 4.844526432999285 0.0 32 0.0011079534437962917 0.0 0.0 4.9516655310143864 0.0 33 0.0011079534437962917 0.0 0.0 5.06434439624847 0.0 34 0.0012187487881759208 0.0 0.0 5.178352805615108 0.0 35 0.0012187487881759208 0.0 0.0 5.331471971547756 0.0 36 0.0012187487881759208 0.0 0.0 5.444040041437459 0.0 37 0.0012187487881759208 0.0 0.0 5.569681961963958 0.0 38 0.0012187487881759208 0.0 0.0 5.683136394608699 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACACGGC 20 7.85558E-4 44.000004 39 CGTTGTC 20 7.85558E-4 44.000004 33 TCTAGCG 40 8.309144E-9 44.000004 1 CTAACGC 20 7.85558E-4 44.000004 20 GTAGATC 20 7.85558E-4 44.000004 41 CGTAGGA 20 7.85558E-4 44.000004 42 GTATGCG 40 8.309144E-9 44.000004 1 TACGACT 20 7.85558E-4 44.000004 36 ACTACGG 20 7.85558E-4 44.000004 2 ACGTCCG 20 7.85558E-4 44.000004 22 GCTACGA 40 8.309144E-9 44.000004 10 GGATTAC 40 8.309144E-9 44.000004 8 CGATAGA 40 8.309144E-9 44.000004 10 AAATCGT 45 4.802132E-10 44.0 12 GTTACGT 25 4.4420773E-5 44.0 25 CGGGCTA 60 0.0 44.0 6 TCCACCG 25 4.4420773E-5 44.0 31 CGCACGG 25 4.4420773E-5 44.0 2 CACGTCG 50 2.7284841E-11 44.0 24 TGTCGTA 25 4.4420773E-5 44.0 17 >>END_MODULE