##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546031_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 892213 Sequences flagged as poor quality 0 Sequence length 50 %GC 40 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.11591962905719 31.0 28.0 33.0 25.0 33.0 2 28.67749853454276 31.0 28.0 33.0 16.0 33.0 3 28.044518517439222 31.0 26.0 33.0 16.0 34.0 4 31.779496600027123 33.0 30.0 35.0 25.0 37.0 5 33.603405240676835 35.0 33.0 35.0 28.0 37.0 6 33.548724351696286 35.0 33.0 37.0 28.0 37.0 7 34.16599623632474 35.0 33.0 37.0 30.0 37.0 8 34.75487131436103 35.0 35.0 37.0 32.0 37.0 9 36.7401663055795 39.0 37.0 39.0 32.0 39.0 10 36.57399298149657 39.0 35.0 39.0 32.0 39.0 11 36.47432283546642 39.0 35.0 39.0 32.0 39.0 12 35.23054472418582 37.0 34.0 39.0 30.0 39.0 13 34.89895238020517 37.0 33.0 39.0 27.0 39.0 14 35.72877889024257 38.0 33.0 40.0 27.0 41.0 15 36.40294526082897 38.0 35.0 40.0 31.0 41.0 16 36.076133165510925 37.0 34.0 40.0 31.0 41.0 17 35.65205057536709 37.0 34.0 40.0 30.0 41.0 18 35.28897023468611 36.0 34.0 39.0 29.0 40.0 19 34.66072899632711 36.0 33.0 39.0 27.0 40.0 20 34.99879961399352 35.0 34.0 39.0 30.0 40.0 21 35.06819671984156 35.0 34.0 39.0 30.0 40.0 22 35.40343729580268 35.0 34.0 39.0 31.0 40.0 23 35.76118034594878 35.0 34.0 39.0 31.0 41.0 24 35.35869237502704 35.0 34.0 39.0 31.0 41.0 25 35.00447987195883 35.0 34.0 39.0 30.0 41.0 26 35.074706376168024 35.0 34.0 39.0 30.0 41.0 27 35.39401129550903 35.0 34.0 39.0 31.0 41.0 28 35.381903200244786 35.0 34.0 40.0 31.0 41.0 29 35.51401290947341 36.0 35.0 40.0 31.0 41.0 30 35.14955285341056 35.0 34.0 40.0 30.0 41.0 31 34.37790975921669 35.0 34.0 39.0 27.0 40.0 32 34.126792593248474 35.0 34.0 39.0 24.0 40.0 33 33.63588403217617 35.0 33.0 40.0 21.0 41.0 34 33.073954313600005 35.0 33.0 40.0 17.0 41.0 35 32.65628162781757 35.0 33.0 40.0 15.0 41.0 36 32.203054651747955 35.0 32.0 39.0 10.0 41.0 37 32.07502468580933 35.0 31.0 39.0 10.0 41.0 38 31.98260953382208 35.0 31.0 39.0 10.0 41.0 39 31.775883113113125 35.0 31.0 39.0 10.0 40.0 40 31.600689521448352 35.0 31.0 39.0 10.0 40.0 41 31.364516096492654 35.0 31.0 39.0 10.0 40.0 42 31.533351340991445 35.0 31.0 39.0 10.0 40.0 43 31.3043297956878 35.0 30.0 39.0 9.0 40.0 44 31.075497667036906 35.0 30.0 38.0 8.0 40.0 45 31.018347636719035 35.0 30.0 38.0 8.0 40.0 46 30.85874785505255 35.0 29.0 38.0 8.0 40.0 47 30.850124353713742 35.0 30.0 38.0 8.0 40.0 48 30.88532558929314 35.0 30.0 38.0 8.0 40.0 49 30.959229466506315 35.0 30.0 38.0 8.0 40.0 50 30.959871689831914 35.0 30.0 39.0 8.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 4.0 13 10.0 14 31.0 15 110.0 16 249.0 17 649.0 18 1231.0 19 2172.0 20 3418.0 21 4973.0 22 7269.0 23 10523.0 24 15329.0 25 23571.0 26 33137.0 27 35768.0 28 30907.0 29 28453.0 30 29454.0 31 34900.0 32 47513.0 33 76316.0 34 126437.0 35 75488.0 36 68181.0 37 97929.0 38 112783.0 39 25408.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 24.622147402021717 21.443197980751233 26.851884023209706 27.082770594017347 2 39.583260947778165 20.43121989928414 28.87752139903812 11.107997753899573 3 25.05141709434855 18.689819583440276 44.412376865165605 11.846386457045572 4 22.47445397007217 23.99987446943723 40.65352107624525 12.872150484245354 5 18.80167628133641 27.767472565407587 41.602958038046964 11.827893115209037 6 17.404476285371317 34.015644246385115 38.831422541478325 9.748456926765245 7 72.44783476591353 4.381352883224073 20.895682981530193 2.275129369332211 8 73.98334254264397 3.114278765272418 20.45968843762644 2.4426902544571756 9 71.0488414761946 4.685988659658625 21.358352770022403 2.906817094124385 10 46.33064077748251 21.233270530691662 24.689732160369775 7.746356531456054 11 42.13321258488724 15.991921211638923 32.512864080662354 9.362002122811482 12 37.89924603205736 18.5046620033557 33.18859958328336 10.407492381303568 13 17.72626043332702 38.05985790388618 33.807958413517845 10.405923249268954 14 12.140934956114739 38.4999994395957 37.32606451598441 12.033001088305147 15 10.911968330432307 18.99411911729598 58.66693267190682 11.42697988036489 16 12.59418995239926 15.74052384352167 55.72010271089975 15.945183493179318 17 13.361047193887558 15.885332314144717 38.66868113331682 32.08493935865091 18 18.31188292481728 20.07491484656691 44.33739477008293 17.275807458532885 19 24.686593896300547 20.6075230914591 37.04743149898063 17.658451513259728 20 26.216721791769455 20.31398332012647 35.801316501777045 17.667978386327032 21 17.722113441521252 24.91792879054665 38.94182218819945 18.418135579732642 22 18.95332168439599 20.966518084807102 36.06280114725968 24.017359083537226 23 15.665429667579378 26.29798041499059 35.77856408727512 22.258025830154907 24 16.117788016986974 19.420923030711275 50.01496279475865 14.4463261575431 25 13.211307165441436 21.836265555422305 45.95998937473451 18.99243790440175 26 13.45306557963177 30.537999334239696 38.8341124821091 17.174822604019443 27 13.907553465372057 30.532507372118538 39.63190404085123 15.92803512165817 28 11.837419988276341 24.285344418877557 49.35200451013379 14.525231082712311 29 12.71568560422231 20.529851055745656 47.08561744785158 19.668845892180457 30 15.770673594758202 26.19946133938869 41.581550593860435 16.448314471992674 31 25.67750077615995 22.27416547393952 35.8184648732982 16.229868876602335 32 26.67759828650782 21.928059779447285 36.42179614060768 14.972545793437217 33 24.59199765078518 23.445074214341194 34.47506368994848 17.487864444925147 34 17.351125796194406 24.226838210158334 36.162553112317354 22.259482881329905 35 18.41017783869995 24.07642569655452 37.65759969872665 19.855796766018877 36 27.864310428115257 22.972989633641294 31.972298094737468 17.190401843505978 37 18.274896241144212 30.829297488380014 34.04568191676203 16.850124353713746 38 19.580189932224705 30.359230363153195 30.148294185357084 19.91228551926502 39 19.49164605312857 29.026252699747708 32.22761829294126 19.254482954182464 40 22.649972596229826 24.516230989685198 30.64324326141852 22.19055315266646 41 16.18884728198311 23.285134827670074 32.47408410323544 28.051933787111373 42 21.585988995901204 23.298920773402763 28.64887644542279 26.466213785273247 43 21.834136019089613 24.475993961083283 29.494750692939913 24.19511932688719 44 18.354809894049964 29.3917483829534 31.209699925914553 21.043741797082085 45 16.353830307336924 35.62546163304054 26.42911502074056 21.59159303888197 46 20.74213220385715 30.028815989007107 29.6661223272918 19.562929479843937 47 20.067069186393834 25.093783659283154 31.40303940875105 23.436107745571967 48 21.867872357833836 21.941509482601127 35.058220402527205 21.13239775703784 49 20.28215235599571 22.316980362312584 34.635339319198444 22.765527962493262 50 18.074607745011562 30.84252302981463 30.4161674398378 20.666701785336013 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 409.0 1 604.0 2 799.0 3 13402.0 4 26005.0 5 19401.5 6 12798.0 7 13431.5 8 14065.0 9 15236.5 10 16408.0 11 16652.0 12 16896.0 13 16197.5 14 15499.0 15 14605.0 16 13711.0 17 12663.0 18 11615.0 19 10663.5 20 9712.0 21 8978.5 22 8245.0 23 7554.0 24 6863.0 25 6538.5 26 6214.0 27 7056.0 28 7898.0 29 8532.5 30 9167.0 31 10698.0 32 12229.0 33 14251.0 34 16273.0 35 19313.0 36 22353.0 37 23009.0 38 23665.0 39 32159.5 40 40654.0 41 56569.5 42 72485.0 43 82475.5 44 92466.0 45 92817.5 46 93169.0 47 85642.5 48 78116.0 49 72420.5 50 66725.0 51 60616.5 52 54508.0 53 47581.0 54 40654.0 55 34690.0 56 28726.0 57 25740.0 58 22754.0 59 19744.0 60 16734.0 61 14541.0 62 12348.0 63 10320.0 64 8292.0 65 6739.0 66 5186.0 67 4091.5 68 2997.0 69 2520.5 70 2044.0 71 1733.0 72 1422.0 73 1119.5 74 817.0 75 708.5 76 600.0 77 490.5 78 381.0 79 255.5 80 130.0 81 111.5 82 93.0 83 65.0 84 37.0 85 29.5 86 22.0 87 17.5 88 13.0 89 8.0 90 3.0 91 3.5 92 4.0 93 5.0 94 6.0 95 4.0 96 2.0 97 1.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 892213.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.63428669438862 #Duplication Level Percentage of deduplicated Percentage of total 1 79.20632675553232 22.680166683273363 2 6.984851493698025 4.000124803765556 3 2.870913964059934 2.4661972056544754 4 1.7534516212940543 2.00835345715498 5 1.2628973901803913 1.8081082968010247 6 0.9317062897870327 1.600724701003621 7 0.7220737660387297 1.4473247061874916 8 0.5417403659263023 1.240987916148539 9 0.4812212638669 1.2401484869700767 >10 3.8819955525517686 24.337462120166542 >50 0.9610194036180434 19.53458671470602 >100 0.40062151993001066 15.4760605997528 >500 3.9353783883105167E-4 0.06603443727076563 >1k 3.9353783883105167E-4 0.1622689243513695 >5k 0.0 0.0 >10k+ 3.9353783883105167E-4 1.9314509467933842 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 17140 1.921065933807286 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1440 0.1613964378461197 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04853101221345127 0.0 2 0.0 0.0 0.0 0.16969042145765642 0.0 3 0.0 0.0 0.0 0.23447315831533502 0.0 4 0.0 0.0 0.0 0.353727192946079 0.0 5 0.0 0.0 0.0 0.5880882704017987 0.0 6 0.0 0.0 0.0 0.8059734614940602 0.0 7 0.0 0.0 0.0 0.9540322770459521 0.0 8 0.0 0.0 0.0 1.3625670103439425 0.0 9 0.0 0.0 0.0 1.5510870162169796 0.0 10 0.0 0.0 0.0 1.8866571099053702 0.0 11 0.0 0.0 0.0 2.175041161695694 0.0 12 0.0 0.0 0.0 2.4292405513033324 0.0 13 0.0 0.0 0.0 2.527311303466773 0.0 14 0.0 0.0 0.0 2.5610476422109967 0.0 15 1.120808596153609E-4 0.0 0.0 2.609914897003294 0.0 16 1.120808596153609E-4 0.0 0.0 2.7308501445282687 0.0 17 1.120808596153609E-4 0.0 0.0 2.8835042753243902 0.0 18 1.120808596153609E-4 0.0 0.0 3.115847897307033 0.0 19 1.120808596153609E-4 0.0 0.0 3.209547495945475 0.0 20 1.120808596153609E-4 0.0 0.0 3.3332847649608333 0.0 21 1.120808596153609E-4 0.0 0.0 3.4768603461281105 0.0 22 1.120808596153609E-4 0.0 0.0 3.61169362024539 0.0 23 1.120808596153609E-4 0.0 0.0 3.7708484408992025 0.0 24 1.120808596153609E-4 0.0 0.0 3.886291726303024 0.0 25 1.120808596153609E-4 0.0 0.0 3.978085950328005 0.0 26 1.120808596153609E-4 0.0 0.0 4.063715727074141 0.0 27 1.120808596153609E-4 0.0 0.0 4.151362959293353 0.0 28 1.120808596153609E-4 0.0 0.0 4.245622962229871 0.0 29 1.120808596153609E-4 0.0 0.0 4.349521919093311 0.0 30 1.120808596153609E-4 0.0 0.0 4.491080044787512 0.0 31 1.120808596153609E-4 0.0 0.0 4.609549513400948 0.0 32 1.120808596153609E-4 0.0 0.0 4.711094772212465 0.0 33 1.120808596153609E-4 0.0 0.0 4.819140720881673 0.0 34 1.120808596153609E-4 0.0 0.0 4.937722270354724 0.0 35 1.120808596153609E-4 0.0 0.0 5.087686460520078 0.0 36 1.120808596153609E-4 0.0 0.0 5.210639163518128 0.0 37 1.120808596153609E-4 0.0 0.0 5.326979095798873 0.0 38 1.120808596153609E-4 0.0 0.0 5.44421567495654 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTCGCAA 65 0.0 44.000004 15 CGGACAA 20 7.855533E-4 44.0 6 TCACGAC 35 1.4456054E-7 44.0 25 CTATGCG 30 2.5270783E-6 44.0 1 GTACCGG 45 4.802132E-10 44.0 2 TGCCCTA 40 8.309144E-9 44.0 24 CGAAACG 20 7.855533E-4 44.0 15 ACGCATA 20 7.855533E-4 44.0 32 CCGATCA 25 4.442036E-5 44.0 11 CTATACG 25 4.442036E-5 44.0 1 ATTCGGC 20 7.855533E-4 44.0 12 AAGCGAC 35 1.4456054E-7 44.0 15 TACGGCA 25 4.442036E-5 44.0 40 TCGATAT 25 4.442036E-5 44.0 16 ATCCGAT 20 7.855533E-4 44.0 25 CCCGTCG 20 7.855533E-4 44.0 44 TAACATG 60 0.0 44.0 1 AAGCACG 25 4.442036E-5 44.0 1 TATTCGA 20 7.855533E-4 44.0 13 ACGGAAT 25 4.442036E-5 44.0 5 >>END_MODULE