##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546030_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 786146 Sequences flagged as poor quality 0 Sequence length 50 %GC 40 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.313175924064996 28.0 25.0 30.0 16.0 33.0 2 26.21667858133222 30.0 25.0 31.0 10.0 33.0 3 26.384829281075017 30.0 25.0 31.0 16.0 33.0 4 27.346388584308766 32.0 19.0 35.0 10.0 35.0 5 31.181593495355823 33.0 30.0 35.0 19.0 35.0 6 29.986270998008003 33.0 28.0 35.0 17.0 36.0 7 30.119367140454827 32.0 28.0 35.0 17.0 35.0 8 32.60088838460032 35.0 32.0 35.0 28.0 35.0 9 27.38615982273013 31.0 23.0 34.0 10.0 37.0 10 32.38497683636373 35.0 31.0 37.0 23.0 39.0 11 34.06910166813798 35.0 32.0 39.0 27.0 39.0 12 33.3365112841635 35.0 31.0 39.0 25.0 39.0 13 32.77986913372325 35.0 31.0 38.0 22.0 39.0 14 32.6531064204359 35.0 30.0 39.0 21.0 40.0 15 31.9663548501169 34.0 27.0 38.0 18.0 40.0 16 30.67646340501637 34.0 27.0 38.0 17.0 40.0 17 30.690584191740466 32.0 27.0 38.0 17.0 40.0 18 31.64507864951294 34.0 29.0 38.0 18.0 39.0 19 31.244254883952852 34.0 29.0 37.0 18.0 39.0 20 31.86580355302959 34.0 30.0 36.0 23.0 39.0 21 32.47146458800274 34.0 31.0 36.0 23.0 39.0 22 32.71177618406759 34.0 31.0 37.0 24.0 39.0 23 34.02419525126376 35.0 33.0 38.0 28.0 39.0 24 33.667756370953995 35.0 33.0 38.0 26.0 40.0 25 32.43614672083812 34.0 31.0 37.0 23.0 39.0 26 25.98452959119553 33.0 18.0 35.0 0.0 38.0 27 29.18679100319788 33.0 23.0 36.0 11.0 39.0 28 30.824621635167006 34.0 27.0 36.0 18.0 39.0 29 32.15877839485287 34.0 30.0 36.0 23.0 39.0 30 31.872157334642676 34.0 30.0 37.0 21.0 39.0 31 30.767990932981913 33.0 29.0 35.0 18.0 38.0 32 30.730683613476376 34.0 29.0 36.0 18.0 38.0 33 30.379061904531728 33.0 29.0 36.0 15.0 38.0 34 30.206670262266805 34.0 28.0 37.0 12.0 39.0 35 29.268726165368772 33.0 25.0 36.0 9.0 39.0 36 28.846527235399023 33.0 23.0 36.0 8.0 39.0 37 28.73421094809361 33.0 23.0 36.0 8.0 39.0 38 28.584364736321245 33.0 23.0 36.0 8.0 38.0 39 28.502725956756123 33.0 23.0 36.0 8.0 38.0 40 28.478306828502593 33.0 23.0 36.0 8.0 38.0 41 28.00400434524885 32.0 23.0 35.0 8.0 38.0 42 28.155641572939377 33.0 23.0 35.0 7.0 38.0 43 27.721326572926657 32.0 23.0 35.0 7.0 38.0 44 27.356340934126738 32.0 22.0 35.0 7.0 38.0 45 26.819949475033898 31.0 21.0 34.0 7.0 37.0 46 26.482620276640727 30.0 20.0 34.0 7.0 38.0 47 26.67627896090548 31.0 20.0 34.0 7.0 37.0 48 26.80134097228759 31.0 21.0 34.0 7.0 37.0 49 26.66411073770012 31.0 20.0 34.0 7.0 37.0 50 28.273603122066383 33.0 23.0 36.0 7.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 5.0 10 6.0 11 11.0 12 44.0 13 108.0 14 289.0 15 648.0 16 1327.0 17 2548.0 18 4379.0 19 6896.0 20 10079.0 21 14166.0 22 18911.0 23 24838.0 24 31495.0 25 39065.0 26 44142.0 27 46378.0 28 49464.0 29 55777.0 30 66152.0 31 76667.0 32 80233.0 33 75840.0 34 61411.0 35 46688.0 36 23501.0 37 4936.0 38 142.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 22.82972882899614 21.927733525324815 26.72582446517568 28.516713180503366 2 39.84259921185123 17.612122938996063 30.50349426188011 12.041783587272594 3 26.208617737672135 14.391474357180472 46.451422509304884 12.948485395842502 4 23.573483805807065 23.866304732199872 39.964459527873956 12.595751934119107 5 17.959895490150686 28.021894151976863 42.74702154561621 11.271188812256247 6 17.123282443719106 32.624601537119055 40.44363260768356 9.808483411478274 7 74.86408377069908 2.800497617490899 21.026883047169356 1.3085355646406647 8 76.99663930109675 1.5745166928280498 20.26570128195017 1.1631427241250352 9 65.86155752239405 2.7751842533066378 19.734883851091272 11.628374373208029 10 48.035606617600294 20.580782704484918 24.835844741307593 6.5477659366071945 11 43.89057503313634 15.012733003793189 32.8449168475067 8.251775115563776 12 38.902315854815775 18.23452641112465 33.49416011784071 9.36899761621887 13 16.882360274045787 39.397134883342275 34.119489255176525 9.601015587435413 14 11.17247941222114 38.899899000948935 38.33003029971532 11.597591287114607 15 9.526220320398501 17.015160033886836 59.823493346019696 13.635126299694967 16 10.923797869606917 13.717553736837687 56.31320390868871 19.045444484866678 17 12.374419001050697 14.665850872484246 39.746815477023354 33.21291464944171 18 17.870471897077643 19.341572684972004 46.06803316432317 16.71992225362719 19 25.59728091219697 19.35518338832736 38.14749423135143 16.90004146812424 20 26.750374612349358 19.65652690467165 36.57577600089551 17.01732248208348 21 16.954865890050957 24.836480755483077 39.926044271674726 18.282609082791236 22 18.288714818875885 20.386289569621926 36.54295766944053 24.782037942061653 23 14.789619231033422 26.28061454233692 36.74915346513244 22.18061276149723 24 14.912369966901823 18.32687566940492 53.05795615572681 13.70279820796646 25 12.264388548691974 20.622886842901956 48.297517255064584 18.815207353341492 26 10.378352112711887 42.38207661172353 32.49345541413427 14.74611586143032 27 12.73592945839577 31.68660783111534 40.553408654372085 15.024054056116803 28 10.816438676785229 23.84862353812142 51.56166920648327 13.773268578610079 29 11.67747466755539 20.138116838348093 48.79335390627186 19.39105458782465 30 15.194378652311402 26.37181897510132 42.43880907617669 15.99499329641059 31 26.66832878371193 21.670783798429298 36.53481668799434 15.126070729864427 32 27.38855123602995 20.82984585560443 37.22743612509636 14.554166783269265 33 25.197100792982475 22.731019428961034 34.697371735021235 17.374508043035263 34 16.81964927634307 23.42223963487698 36.39285832402633 23.36525276475362 35 18.04931908322373 23.59383625942255 38.05310972770961 20.30373492964411 36 28.445479592849164 22.208978993723814 31.683936571578307 17.661604841848717 37 17.327188588379258 31.863801380405164 33.31111523813643 17.497894793079148 38 18.831489316233878 31.235928186367417 29.756813619861962 20.175768877536743 39 19.185749211978436 29.193305060383185 31.782391565943225 19.838554161695157 40 22.66054905831741 23.660236139343073 30.58325043948579 23.095964362853717 41 15.205445298964824 22.34546763578267 32.540393260284986 29.908693804967523 42 20.649090626931894 22.278177336016466 27.87243082073813 29.200301216313505 43 21.240965418637252 23.101434084762882 29.769661106206733 25.887939390393132 44 17.37743370824249 29.06826467348304 31.517300857601516 22.037000760672953 45 15.416856410895685 37.02696445698382 25.454940939723663 22.10123819239683 46 19.686673976589592 29.91047464465888 29.078695305960977 21.32415607279055 47 19.34398953883884 24.09539703820919 30.772655460944915 25.787957962007056 48 20.90387790563076 21.073948096155167 36.21413834071534 21.808035657498735 49 19.727251680985468 22.090044342908318 34.27569433667538 23.907009639430843 50 17.274653817484285 31.866599842777294 29.90449611140933 20.954250228329087 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 208.0 1 344.0 2 480.0 3 7783.0 4 15086.0 5 12577.5 6 10069.0 7 10622.5 8 11176.0 9 12383.5 10 13591.0 11 14434.5 12 15278.0 13 15435.5 14 15593.0 15 15228.0 16 14863.0 17 14157.5 18 13452.0 19 12582.0 20 11712.0 21 10921.0 22 10130.0 23 9450.0 24 8770.0 25 8140.5 26 7511.0 27 7878.5 28 8246.0 29 8742.5 30 9239.0 31 10500.0 32 11761.0 33 13223.5 34 14686.0 35 16716.0 36 18746.0 37 19561.0 38 20376.0 39 27457.5 40 34539.0 41 47719.5 42 60900.0 43 69668.0 44 78436.0 45 78488.0 46 78540.0 47 73011.5 48 67483.0 49 62512.0 50 57541.0 51 52302.5 52 47064.0 53 41803.5 54 36543.0 55 31450.0 56 26357.0 57 23442.0 58 20527.0 59 17847.0 60 15167.0 61 13179.5 62 11192.0 63 9394.5 64 7597.0 65 6216.5 66 4836.0 67 3866.5 68 2897.0 69 2450.5 70 2004.0 71 1659.0 72 1314.0 73 1089.0 74 864.0 75 736.0 76 608.0 77 493.5 78 379.0 79 288.5 80 198.0 81 146.5 82 95.0 83 73.0 84 51.0 85 34.5 86 18.0 87 12.0 88 6.0 89 6.0 90 6.0 91 6.5 92 7.0 93 4.5 94 2.0 95 1.5 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 786146.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.95251573353155 #Duplication Level Percentage of deduplicated Percentage of total 1 84.31000347779883 36.21326750874253 2 6.243870758867103 5.363799140167536 3 2.386923413997698 3.0757309648341282 4 1.2795445853617575 2.19838635738024 5 0.8369087421225713 1.7973667956774921 6 0.6014827276870836 1.5501117794656156 7 0.4711110353097409 1.4164782909467388 8 0.3620157073262115 1.2439588291771724 9 0.29346376162981064 1.1344506154763212 >10 2.6403062318043324 24.628933035081097 >50 0.4645779885466844 13.84521208890925 >100 0.10913998753305582 6.226427126095569 >500 3.2579100756135847E-4 0.08662003351057732 >1k 0.0 0.0 >5k 3.2579100756135847E-4 1.2192574345357998 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8713 1.1083183021983194 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03319993996026183 0.0 2 0.0 0.0 0.0 0.12796605210736936 0.0 3 0.0 0.0 0.0 0.1779567663004073 0.0 4 0.0 0.0 0.0 0.2522432219969319 0.0 5 0.0 0.0 0.0 0.4160804736015956 0.0 6 0.0 0.0 0.0 0.5472265965863847 0.0 7 0.0 0.0 0.0 0.631943684760846 0.0 8 0.0 0.0 0.0 0.8820244585611324 0.0 9 0.0 0.0 0.0 1.0246188367046325 0.0 10 0.0 0.0 0.0 1.2523119115278842 0.0 11 0.0 0.0 0.0 1.4540556079913909 0.0 12 0.0 0.0 0.0 1.6412981812538638 0.0 13 0.0 0.0 0.0 1.7120229575676782 0.0 14 0.0 0.0 0.0 1.7328842225235517 0.0 15 0.0 0.0 0.0 1.7660841624838135 0.0 16 0.0 0.0 0.0 1.8374449529731118 0.0 17 0.0 0.0 0.0 1.9462033769808662 0.0 18 0.0 0.0 0.0 2.093249854352754 0.0 19 0.0 0.0 0.0 2.1427317572054045 0.0 20 0.0 0.0 0.0 2.220707095119736 0.0 21 0.0 0.0 0.0 2.295756767826841 0.0 22 0.0 0.0 0.0 2.38136427584698 0.0 23 0.0 0.0 0.0 2.4701518547445387 0.0 24 0.0 0.0 0.0 2.5374421545107397 0.0 25 0.0 0.0 0.0 2.5948106331393914 0.0 26 0.0 0.0 0.0 2.6488718380555265 0.0 27 0.0 0.0 0.0 2.7126004584390175 0.0 28 0.0 0.0 0.0 2.7842156545985097 0.0 29 0.0 0.0 0.0 2.8712223938047132 0.0 30 0.0 0.0 0.0 2.976037529924467 0.0 31 0.0 0.0 0.0 3.068895599545123 0.0 32 0.0 0.0 0.0 3.147634154470035 0.0 33 0.0 0.0 0.0 3.227135926405528 0.0 34 0.0 0.0 0.0 3.3072737125165044 0.0 35 0.0 0.0 0.0 3.4251907406512276 0.0 36 0.0 0.0 0.0 3.5155047535699477 0.0 37 0.0 0.0 0.0 3.6070907948396354 0.0 38 0.0 0.0 0.0 3.696895996417968 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAATCGG 30 2.5266909E-6 44.0 2 AGATCGT 20 7.8549614E-4 44.0 22 ACGTTAG 75 0.0 44.0 1 TAGACGT 20 7.8549614E-4 44.0 25 TAGGTCG 20 7.8549614E-4 44.0 41 TAGCGGC 20 7.8549614E-4 44.0 3 CGTAGAA 25 4.441552E-5 44.0 28 TACGACG 30 2.5266909E-6 44.0 25 TGCGAAG 75 0.0 44.0 1 ACGTGCG 20 7.8549614E-4 44.0 1 GTGTACG 100 0.0 44.0 1 TTAGTCG 20 7.8549614E-4 44.0 2 GTATACG 20 7.8549614E-4 44.0 1 TTACGAC 30 2.5266909E-6 44.0 24 CCGGTCA 20 7.8549614E-4 44.0 32 TAGGCCG 20 7.8549614E-4 44.0 5 GGTTCGT 30 2.5266909E-6 44.0 42 GCTCGAA 40 8.307325E-9 44.0 21 CTTAGGT 20 7.8549614E-4 44.0 19 ACGACGT 25 4.441552E-5 44.0 26 >>END_MODULE