##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546026_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1087880 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.997833400742728 28.0 25.0 30.0 16.0 33.0 2 26.249693900062507 30.0 25.0 31.0 10.0 33.0 3 26.426583814391293 30.0 25.0 31.0 16.0 33.0 4 27.8374912674192 32.0 19.0 35.0 10.0 37.0 5 31.190541236165753 33.0 30.0 35.0 19.0 37.0 6 29.96558719711733 33.0 28.0 35.0 17.0 36.0 7 29.97925966099202 32.0 28.0 35.0 17.0 35.0 8 32.489493326469834 35.0 32.0 35.0 28.0 35.0 9 27.231845424127663 31.0 23.0 34.0 10.0 35.0 10 31.582085340294885 34.0 30.0 37.0 17.0 39.0 11 33.83709140714049 35.0 32.0 37.0 27.0 39.0 12 33.2485035114167 35.0 31.0 39.0 25.0 39.0 13 33.3457293083796 35.0 32.0 39.0 24.0 39.0 14 33.16924385042468 36.0 31.0 39.0 22.0 40.0 15 32.09688017060705 34.0 27.0 38.0 18.0 40.0 16 30.657675478913117 34.0 27.0 38.0 17.0 40.0 17 30.824817075412728 33.0 27.0 38.0 17.0 40.0 18 31.755063977644593 34.0 29.0 38.0 18.0 39.0 19 31.38532650659999 34.0 28.0 37.0 18.0 39.0 20 32.0004871860867 34.0 30.0 37.0 22.0 39.0 21 32.816814354524396 34.0 31.0 37.0 24.0 39.0 22 33.15550060668456 35.0 31.0 37.0 25.0 39.0 23 34.440074272897746 35.0 33.0 38.0 29.0 40.0 24 34.07233242637056 35.0 33.0 38.0 27.0 40.0 25 32.92530242306137 35.0 31.0 38.0 23.0 39.0 26 26.46325789609148 33.0 20.0 36.0 0.0 39.0 27 29.731750744567414 34.0 24.0 37.0 15.0 39.0 28 31.26087252270471 34.0 28.0 37.0 20.0 39.0 29 32.54343953377211 35.0 30.0 37.0 23.0 39.0 30 32.3349385961687 35.0 30.0 37.0 22.0 39.0 31 31.21241772989668 34.0 29.0 36.0 19.0 39.0 32 31.414777365150567 34.0 30.0 37.0 18.0 39.0 33 31.082856565062322 34.0 29.0 37.0 18.0 39.0 34 30.942012905835202 34.0 29.0 37.0 15.0 39.0 35 30.07668584770379 34.0 27.0 37.0 10.0 39.0 36 29.781109129683422 34.0 26.0 37.0 10.0 39.0 37 29.84712100599331 34.0 27.0 37.0 10.0 39.0 38 29.594947052983784 33.0 26.0 37.0 10.0 39.0 39 29.477861528845093 33.0 26.0 37.0 10.0 39.0 40 29.366740817001876 33.0 26.0 36.0 10.0 38.0 41 28.76934312608008 33.0 24.0 36.0 9.0 38.0 42 28.917426554399384 33.0 24.0 36.0 8.0 38.0 43 28.489768172960254 33.0 24.0 35.0 8.0 38.0 44 28.252612420487555 32.0 23.0 35.0 8.0 38.0 45 27.78818343934993 31.0 23.0 35.0 8.0 38.0 46 27.383034893554438 31.0 23.0 35.0 8.0 38.0 47 27.443089311321103 31.0 23.0 35.0 8.0 38.0 48 27.506529212780823 31.0 23.0 35.0 8.0 37.0 49 27.338838842519394 31.0 23.0 35.0 8.0 37.0 50 29.09708056035592 33.0 24.0 37.0 8.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 5.0 11 17.0 12 39.0 13 123.0 14 303.0 15 770.0 16 1534.0 17 2833.0 18 4727.0 19 7713.0 20 11386.0 21 16248.0 22 22113.0 23 29646.0 24 38107.0 25 47470.0 26 55655.0 27 60529.0 28 65738.0 29 75984.0 30 90500.0 31 106306.0 32 116118.0 33 114772.0 34 99975.0 35 75196.0 36 36504.0 37 7356.0 38 207.0 39 4.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.108835533330883 22.342813545611648 26.388112659484502 26.160238261572964 2 40.76699635989264 16.724914512630072 29.81073280141192 12.697356326065377 3 28.092344743905578 14.580376512115306 43.21469279699967 14.112585946979447 4 25.514027282420855 23.66538588814943 37.33536787145641 13.485218957973306 5 19.767713350737214 27.962091407140495 39.45058278486598 12.819612457256316 6 18.229492223406993 33.5402801779608 37.97064014413355 10.259587454498657 7 75.91848365628562 3.3282163473912565 19.13234915615693 1.6209508401661947 8 77.69147332426371 2.140585358679266 18.537890208478878 1.6300511085781522 9 65.71083207706732 3.239787476559915 18.564179872780088 12.485200573592675 10 43.329135566422764 20.841912710960766 25.578648380336066 10.250303342280398 11 38.034342023017246 18.831396845240285 31.297569584880687 11.836691546861786 12 33.65941096444461 19.33990881347207 34.46777218075523 12.532908041328087 13 20.037779902195098 31.439680847152257 34.9618524101923 13.560686840460345 14 14.871677023201087 32.5887046365408 38.52722726771335 14.012391072544766 15 13.16808839210207 18.413795639224915 50.88051991028423 17.537596058388793 16 15.01103062837813 15.24028385483693 48.657664448284734 21.0910210685002 17 16.36936059124168 16.819685994778837 38.073776519469064 28.737176894510423 18 19.99053204397544 20.192300621392064 42.26817296025297 17.54899437437953 19 25.644096775379637 20.557138654998713 36.171268889951094 17.627495679670552 20 26.425800639776448 20.736570209949626 35.293874324374016 17.543754825899917 21 20.470823987939845 23.725318969003933 38.24741699452146 17.556440048534768 22 19.775159024892453 20.318969003934257 35.908372246939 23.99749972423429 23 17.569217193072763 24.85917564437254 35.85257565172629 21.7190315108284 24 17.786704415928227 20.63150347464794 45.83704085009376 15.744751259330073 25 17.18930396734934 19.75705040997169 43.24171783652609 19.811927786152886 26 12.654704563003271 39.620822149501784 31.003143729087768 16.721329558407177 27 16.345920505938157 27.91686583079016 38.421149391477 17.316064271794684 28 14.891624076184872 23.795823068720814 44.98336213552965 16.329190719564657 29 15.88796558443946 21.516619480089716 43.62521601647241 18.970198918998417 30 18.15521932566092 24.61025113063941 40.25866823546715 16.975861308232528 31 26.23524653454425 21.59493694157444 35.26960694194213 16.900209581939187 32 25.952494760451522 21.921443541567083 35.74649777548994 16.379563922491453 33 24.787844247527303 22.9160385336618 34.24035739235945 18.05575982645145 34 18.87597896826856 23.83691215942935 35.002298047578776 22.284810824723316 35 19.712927896459167 23.85253888296503 35.576809942273044 20.857723278302753 36 26.73539360958929 22.971651285068205 31.264937309262052 19.02801779608045 37 19.631852777879914 29.36895613486782 31.548975989998894 19.450215097253373 38 20.350038607199323 29.614939147700113 29.29633783137846 20.7386844137221 39 20.72664264440931 27.032485200573593 30.657425451336547 21.583446703680554 40 23.47887634665588 23.318196859947786 30.393333823583486 22.809592969812847 41 18.15623046659558 22.24050446740449 31.970529837849764 27.632735228150164 42 21.22311284332831 23.58146119057249 28.3230687208148 26.872357245284405 43 20.850829135566425 24.087950876934954 29.828657572526378 25.232562414972236 44 19.211861602382616 26.987535389932717 31.337371768945104 22.463231238739567 45 18.06201051586572 31.87254108909071 27.86327536125308 22.202173033790494 46 20.323105489576058 27.665827113284553 29.675056072360924 22.336011324778468 47 20.027760414751626 25.060760377982866 30.553921388388428 24.357557818877083 48 20.604202669412068 23.68082876787881 33.429881972276355 22.28508659043277 49 20.79006875758356 23.09059822774571 33.367283156230464 22.75204985844027 50 19.150733536787147 28.508291355664227 31.055998823399637 21.28497628414899 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 349.0 1 749.0 2 1149.0 3 14048.5 4 26948.0 5 21036.5 6 15125.0 7 14803.5 8 14482.0 9 15347.5 10 16213.0 11 16798.5 12 17384.0 13 17353.0 14 17322.0 15 16566.5 16 15811.0 17 14958.5 18 14106.0 19 13466.0 20 12826.0 21 12047.5 22 11269.0 23 10725.5 24 10182.0 25 10395.5 26 10609.0 27 10788.5 28 10968.0 29 11303.5 30 11639.0 31 13522.5 32 15406.0 33 18088.0 34 20770.0 35 23738.0 36 26706.0 37 28522.0 38 30338.0 39 36361.5 40 42385.0 41 54078.5 42 65772.0 43 76637.5 44 87503.0 45 88171.5 46 88840.0 47 85102.5 48 81365.0 49 79832.5 50 78300.0 51 72688.0 52 67076.0 53 61454.0 54 55832.0 55 51891.5 56 47951.0 57 45148.5 58 42346.0 59 38939.0 60 35532.0 61 31857.0 62 28182.0 63 25010.0 64 21838.0 65 18633.5 66 15429.0 67 12816.0 68 10203.0 69 8805.5 70 7408.0 71 6274.0 72 5140.0 73 4085.0 74 3030.0 75 2459.5 76 1889.0 77 1473.0 78 1057.0 79 811.5 80 566.0 81 441.0 82 316.0 83 234.5 84 153.0 85 110.5 86 68.0 87 58.5 88 49.0 89 36.5 90 24.0 91 17.5 92 11.0 93 10.5 94 10.0 95 6.0 96 2.0 97 1.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1087880.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.80204285177583 #Duplication Level Percentage of deduplicated Percentage of total 1 82.4995074651049 36.13646961236924 2 6.964450363599961 6.101143065309425 3 2.715002166646942 3.5676792373840076 4 1.5430758514259515 2.7035949827079997 5 0.9937071358453479 2.176320127320668 6 0.7211549115871766 1.8952835004066075 7 0.521819031906808 1.5999717717517927 8 0.410202327451996 1.4374159939960405 9 0.32980097186724644 1.30013606720578 >10 2.8589842434448425 25.979829376789944 >50 0.37357097296500497 11.1588977450298 >100 0.06781730326279606 4.209617701224482 >500 6.804411683027129E-4 0.15677279149568724 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 2.2681372276757094E-4 1.5768680270085853 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15872 1.4589844468139868 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.024175460528734788 0.0 2 0.0 0.0 0.0 0.109846674265544 0.0 3 0.0 0.0 0.0 0.1500165459425672 0.0 4 0.0 0.0 0.0 0.2120638305695481 0.0 5 0.0 0.0 0.0 0.3535316395190646 0.0 6 0.0 0.0 0.0 0.4702724565209398 0.0 7 0.0 0.0 0.0 0.5469353237489429 0.0 8 0.0 0.0 0.0 0.7619406552193256 0.0 9 0.0 0.0 0.0 0.8937566643379784 0.0 10 0.0 0.0 0.0 1.0994778835901018 0.0 11 0.0 0.0 0.0 1.2689818730006985 0.0 12 0.0 0.0 0.0 1.4267198588079568 0.0 13 0.0 0.0 0.0 1.4899621281759017 0.0 14 0.0 0.0 0.0 1.5103687906754422 0.0 15 0.0 0.0 0.0 1.5483325366768395 0.0 16 0.0 0.0 0.0 1.6154355259771298 0.0 17 0.0 0.0 0.0 1.7138838842519395 0.0 18 0.0 0.0 0.0 1.8490090818840312 9.192190315108284E-5 19 0.0 0.0 0.0 1.9006691914549398 9.192190315108284E-5 20 0.0 0.0 0.0 1.9609699599220503 9.192190315108284E-5 21 0.0 0.0 0.0 2.0255910578372616 9.192190315108284E-5 22 0.0 0.0 0.0 2.094808250910027 9.192190315108284E-5 23 0.0 0.0 0.0 2.1664154134647204 9.192190315108284E-5 24 0.0 0.0 0.0 2.2196381953891975 9.192190315108284E-5 25 0.0 0.0 0.0 2.2641283965143213 9.192190315108284E-5 26 0.0 0.0 0.0 2.3101812699930138 9.192190315108284E-5 27 0.0 0.0 0.0 2.374710446005074 9.192190315108284E-5 28 0.0 0.0 0.0 2.4371254182446593 9.192190315108284E-5 29 0.0 0.0 0.0 2.512225613119094 9.192190315108284E-5 30 0.0 0.0 0.0 2.6055263448174433 9.192190315108284E-5 31 0.0 0.0 0.0 2.6856822443651875 9.192190315108284E-5 32 0.0 0.0 0.0 2.760414751627018 9.192190315108284E-5 33 0.0 0.0 0.0 2.835514946501452 9.192190315108284E-5 34 0.0 0.0 0.0 2.923943817332794 9.192190315108284E-5 35 0.0 0.0 0.0 3.0242306136706256 9.192190315108284E-5 36 0.0 0.0 0.0 3.1069603265066 9.192190315108284E-5 37 0.0 0.0 0.0 3.1917123212118983 9.192190315108284E-5 38 0.0 0.0 0.0 3.287954553811082 9.192190315108284E-5 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTCGA 20 7.8562973E-4 44.0 14 GTTACGG 55 1.8189894E-12 44.0 2 CCGTAGG 70 0.0 44.0 2 AACGCTA 20 7.8562973E-4 44.0 37 TCGTCGG 30 2.5275913E-6 44.0 2 AATGTCG 25 4.442682E-5 44.0 11 TCTATGC 20 7.8562973E-4 44.0 37 CGTTTTT 16510 0.0 43.480312 1 TGCGTAG 110 0.0 42.0 1 CGGGAAT 1360 0.0 41.411766 9 CGGAATT 400 0.0 40.15 9 ATATACG 55 7.8216544E-11 40.0 1 GCGAAAC 50 1.3478711E-9 39.600002 9 GTTTACG 50 1.3478711E-9 39.600002 1 CGACCCG 440 0.0 39.5 32 GTTTTTT 18455 0.0 39.4343 2 ACCCGCT 440 0.0 39.0 34 GCGGAAT 480 0.0 38.958332 8 TAACGAC 40 4.1242674E-7 38.5 25 AGACGTG 430 0.0 38.372093 24 >>END_MODULE