##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546023_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 734668 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.74151725677449 31.0 28.0 31.0 16.0 33.0 2 28.69213304513059 31.0 28.0 33.0 16.0 33.0 3 28.109213957869404 31.0 26.0 33.0 16.0 34.0 4 32.10588592398199 35.0 32.0 35.0 25.0 37.0 5 33.62287863361409 35.0 33.0 35.0 28.0 37.0 6 33.48473324004856 35.0 33.0 37.0 28.0 37.0 7 34.32472899323232 35.0 35.0 37.0 31.0 37.0 8 34.72895784218178 35.0 35.0 37.0 32.0 37.0 9 36.58825074727632 39.0 37.0 39.0 32.0 39.0 10 36.297349278857936 38.0 35.0 39.0 32.0 39.0 11 36.40319028459113 38.0 35.0 39.0 32.0 39.0 12 35.34306652800993 37.0 34.0 39.0 30.0 39.0 13 35.68077417282364 37.0 35.0 39.0 30.0 39.0 14 36.377687608552435 38.0 35.0 40.0 30.0 41.0 15 36.78590873700774 38.0 35.0 40.0 31.0 41.0 16 36.315686813635544 38.0 34.0 40.0 31.0 41.0 17 35.947008716862584 38.0 34.0 40.0 30.0 41.0 18 35.55759336189953 37.0 34.0 39.0 29.0 40.0 19 35.00463883005657 37.0 33.0 39.0 27.0 41.0 20 35.51912428471092 36.0 34.0 39.0 30.0 41.0 21 35.62128199404357 36.0 34.0 39.0 30.0 40.0 22 35.97370512939178 37.0 34.0 40.0 31.0 41.0 23 36.30794590209455 37.0 35.0 40.0 31.0 41.0 24 35.878595501641556 36.0 35.0 40.0 31.0 41.0 25 35.53825401405805 36.0 34.0 40.0 30.0 41.0 26 35.67812807962236 37.0 34.0 40.0 30.0 41.0 27 36.02134433512825 37.0 35.0 40.0 31.0 41.0 28 35.935682512372935 37.0 35.0 40.0 31.0 41.0 29 36.05173493333043 37.0 35.0 40.0 31.0 41.0 30 35.68238850746187 37.0 35.0 40.0 30.0 41.0 31 34.96962709686552 36.0 34.0 40.0 29.0 41.0 32 34.95476460115317 37.0 34.0 40.0 27.0 41.0 33 34.666356776122 37.0 34.0 40.0 24.0 41.0 34 34.25149591380052 37.0 34.0 40.0 22.0 41.0 35 33.94691071341068 37.0 33.0 40.0 20.0 41.0 36 33.546754452351266 36.0 33.0 40.0 18.0 41.0 37 33.48652452536384 36.0 33.0 40.0 18.0 41.0 38 33.31466730550398 36.0 33.0 40.0 17.0 41.0 39 33.02571773916926 36.0 33.0 40.0 15.0 41.0 40 32.88137907190731 36.0 32.0 40.0 15.0 40.0 41 32.568142344569246 35.0 32.0 39.0 15.0 40.0 42 32.761286730877075 36.0 32.0 40.0 15.0 40.0 43 32.54542732227346 35.0 32.0 39.0 13.0 40.0 44 32.399889473884805 35.0 32.0 39.0 12.0 40.0 45 32.360988909276024 35.0 31.0 39.0 12.0 40.0 46 32.16993798559349 35.0 31.0 39.0 12.0 40.0 47 32.1264652877218 35.0 31.0 39.0 12.0 40.0 48 32.09724664746525 35.0 31.0 39.0 12.0 40.0 49 32.139222070377365 35.0 31.0 39.0 12.0 40.0 50 32.233212825385074 35.0 31.0 39.0 12.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 3.0 11 4.0 12 11.0 13 12.0 14 47.0 15 88.0 16 203.0 17 413.0 18 802.0 19 1372.0 20 2251.0 21 3246.0 22 4526.0 23 6587.0 24 9561.0 25 14573.0 26 20399.0 27 23340.0 28 22526.0 29 21738.0 30 23263.0 31 27910.0 32 36364.0 33 53516.0 34 80615.0 35 69414.0 36 75380.0 37 103026.0 38 109999.0 39 23479.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.859702613969844 22.205132114097797 26.2835729880708 22.651592283861554 2 39.65069936352202 19.115437177065015 28.91251558527117 12.32134787414179 3 28.67934903929394 18.5063185003294 39.76313110139546 13.0512013589812 4 25.622049687750113 24.640245661986093 35.29499039021708 14.442714260046715 5 20.574191335405924 28.530846586485325 36.85950660706605 14.035455471042702 6 18.823468559948168 36.125841876875 34.98410166224743 10.066587900929399 7 75.67418207952436 4.774265382458471 17.0226551312974 2.52889740671977 8 76.81864461226023 3.610474391153555 16.77927989241399 2.7916011041722246 9 72.8183342679959 5.311787092945385 18.26375995687848 3.6061186821802504 10 41.5119482541774 23.294603821045698 23.606853708069494 11.586594216707411 11 34.401797818878734 21.759896987482783 30.278166464307688 13.5601387293308 12 30.94989845753456 21.21420832267092 33.74394964800427 14.09194357179025 13 20.67015304872405 29.488149749274502 34.478158841816985 15.363538360184464 14 16.944524601588746 30.67712218308134 36.824116471657945 15.55423674367197 15 16.16675831804298 21.66134907196176 46.46479770454137 15.707094905453891 16 18.68925827720821 18.8082235785416 44.07936646212983 18.42315168212036 17 19.027370186261006 19.087125068738533 35.73015293983133 26.155351805169136 18 21.548372870466658 20.9406153527852 38.990128874539245 18.52088290220889 19 26.042239487768626 21.994560808419585 33.56141821884171 18.40178148497008 20 26.78883522897418 22.093244839846026 32.92439578149586 18.19352414968394 21 22.246239117533364 23.802180032341138 35.560688637588676 18.39089221253682 22 21.920105408157152 21.355224400681667 34.13310502158799 22.591565169573194 23 19.30069092433589 25.050090653193006 34.191770976822184 21.45744744564892 24 19.05173493333043 21.855586468990072 41.55142186674797 17.541256730931522 25 19.097605993455545 22.553861063773024 38.809230836241674 19.539302106529753 26 17.91094753004078 26.77672091339217 34.990907457518226 20.32142409904882 27 18.318886898571872 26.59609510690543 35.9714864401335 19.113531554389194 28 17.43073061573391 23.841789760817132 40.53259431471086 18.194885308738094 29 18.38953105348266 22.677045958174304 39.129239329874174 19.80418365846886 30 20.185580425443874 25.00272231810832 36.52044188667534 18.29125536977247 31 25.21166023292154 23.380220725552224 32.87267173743786 18.535447304088375 32 26.029308476754125 22.945602639559638 33.07616501603445 17.948923867651782 33 25.25957303162789 23.89991125242967 31.43174876270642 19.40876695323602 34 19.79615282004933 24.908257879749765 33.25066560677749 22.044923693423424 35 20.81402756074853 24.57940185226524 33.80452122591429 20.80204936107194 36 26.35557830203575 24.533122444423878 29.943457452890286 19.16784180065009 37 20.354228032254024 28.957433834058378 30.750352540195024 19.93798559349257 38 20.70145970696968 29.160382649033306 29.0766713672026 21.061486276794415 39 21.34746579407297 27.88429603576037 29.421044607904523 21.347193562262138 40 23.456581748490475 24.96392928506482 29.36632601392738 22.213162952517326 41 19.678140330053846 23.751817147337302 30.507521764933276 26.06252075767558 42 21.745196469697877 24.46914796887846 28.92762445077232 24.85803111065134 43 21.277910566405506 24.69782268997697 30.1816602873679 23.842606456249626 44 20.51511703245548 26.524089792940487 30.783973168832723 22.176820005771315 45 19.521743154731116 30.274355218956046 28.175175725633895 22.028725900678946 46 21.408037371982992 27.738379785154656 29.28247861619126 21.571104226671096 47 20.336805196360803 26.286703653895366 30.704753711880738 22.67173743786309 48 21.19746606630478 24.362569214937903 32.715866214398886 21.72409850435843 49 21.60703882570086 24.293830682702936 32.7452672499687 21.35386324162751 50 19.912259687368987 28.188787316175468 30.81092411810505 21.088028878350492 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 274.0 1 652.0 2 1030.0 3 12756.0 4 24482.0 5 17028.0 6 9574.0 7 9509.0 8 9444.0 9 9466.5 10 9489.0 11 9276.5 12 9064.0 13 8621.5 14 8179.0 15 7711.5 16 7244.0 17 6663.5 18 6083.0 19 5768.0 20 5453.0 21 5164.0 22 4875.0 23 4809.5 24 4744.0 25 5055.5 26 5367.0 27 5979.5 28 6592.0 29 7773.0 30 8954.0 31 10167.5 32 11381.0 33 12904.0 34 14427.0 35 16882.5 36 19338.0 37 20626.0 38 21914.0 39 26072.0 40 30230.0 41 37341.5 42 44453.0 43 49926.5 44 55400.0 45 55354.0 46 55308.0 47 53872.5 48 52437.0 49 52678.0 50 52919.0 51 50545.0 52 48171.0 53 44965.0 54 41759.0 55 38570.5 56 35382.0 57 33227.0 58 31072.0 59 28139.0 60 25206.0 61 23284.5 62 21363.0 63 18947.0 64 16531.0 65 14512.5 66 12494.0 67 10464.5 68 8435.0 69 7011.0 70 5587.0 71 4752.0 72 3917.0 73 3390.5 74 2864.0 75 2177.5 76 1491.0 77 1185.5 78 880.0 79 642.0 80 404.0 81 328.5 82 253.0 83 171.0 84 89.0 85 73.5 86 58.0 87 42.0 88 26.0 89 21.0 90 16.0 91 9.5 92 3.0 93 3.5 94 4.0 95 6.0 96 8.0 97 4.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 734668.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.54775564218343 #Duplication Level Percentage of deduplicated Percentage of total 1 73.96154516896875 24.81243844246876 2 8.199376070963744 5.5014132969411556 3 3.9813720021201275 4.006982851432699 4 2.498800998179661 3.3531666114150123 5 1.771201596142557 2.9709919170217876 6 1.307974507397259 2.632776549622109 7 0.9913532156198455 2.328037280289515 8 0.7961496435555974 2.136722695729169 9 0.6454022761750254 1.948661806682586 >10 5.373453727156383 37.098673726397294 >50 0.4415406887448294 9.372660074216434 >100 0.03101394843837789 1.5939395129835883 >500 4.080782689260249E-4 0.10609835287832009 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 4.080782689260249E-4 2.1374368819215634 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15613 2.1251776312565673 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 775 0.10548982669722923 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.028720456042729506 0.0 2 0.0 0.0 0.0 0.10195081315641895 0.0 3 0.0 0.0 0.0 0.13366581911829561 0.0 4 0.0 0.0 0.0 0.1985931060016225 0.0 5 0.0 0.0 0.0 0.35580697675684797 0.0 6 0.0 0.0 0.0 0.5279935971078092 0.0 7 0.0 0.0 0.0 0.6481839415899426 0.0 8 0.0 0.0 0.0 0.9628839149112252 0.0 9 0.0 0.0 0.0 1.108119585989862 0.0 10 0.0 0.0 0.0 1.341013900156261 0.0 11 0.0 0.0 0.0 1.523953677035069 0.0 12 0.0 0.0 0.0 1.6855232567635994 0.0 13 0.0 0.0 0.0 1.7504505436469262 0.0 14 1.3611590541577964E-4 0.0 0.0 1.7763125656759244 0.0 15 1.3611590541577964E-4 0.0 0.0 1.8106137738407009 0.0 16 1.3611590541577964E-4 0.0 0.0 1.9009947350367786 0.0 17 2.722318108315593E-4 0.0 0.0 2.007029025355671 0.0 18 4.0834771624733893E-4 0.0 0.0 2.1695514164221117 0.0 19 4.0834771624733893E-4 0.0 0.0 2.241012266765396 0.0 20 4.0834771624733893E-4 0.0 0.0 2.3326182711102157 0.0 21 4.0834771624733893E-4 0.0 0.0 2.42504097088753 0.0 22 4.0834771624733893E-4 0.0 0.0 2.5182803660973394 0.0 23 4.0834771624733893E-4 0.0 0.0 2.6248591200378946 0.0 24 4.0834771624733893E-4 0.0 0.0 2.7096593291119255 0.0 25 4.0834771624733893E-4 0.0 0.0 2.780984063549794 0.0 26 4.0834771624733893E-4 0.0 0.0 2.8542144206634834 0.0 27 4.0834771624733893E-4 0.0 0.0 2.9345228048587932 0.0 28 4.0834771624733893E-4 0.0 0.0 3.0153756526757665 0.0 29 4.0834771624733893E-4 0.0 0.0 3.105348266155597 0.0 30 4.0834771624733893E-4 0.0 0.0 3.2252663788268987 0.0 31 5.444636216631186E-4 0.0 0.0 3.322044787577518 0.0 32 5.444636216631186E-4 0.0 0.0 3.41841484861189 0.0 33 5.444636216631186E-4 0.0 0.0 3.5173711118491617 0.0 34 5.444636216631186E-4 0.0 0.0 3.6220442431138964 0.0 35 5.444636216631186E-4 0.0 0.0 3.7479514556234923 0.0 36 5.444636216631186E-4 0.0 0.0 3.842279778076628 0.0 37 5.444636216631186E-4 0.0 0.0 3.946544561625115 0.0 38 5.444636216631186E-4 0.0 0.0 4.073676817283453 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGGCTA 30 2.5264653E-6 44.0 6 TGCTACG 20 7.8546256E-4 44.0 1 ACGTATG 25 4.4412653E-5 44.0 1 AGTACGG 50 2.7284841E-11 44.0 2 AATCGTA 20 7.8546256E-4 44.0 13 TTGTACG 35 1.4451325E-7 43.999996 1 ATGACGG 70 0.0 43.999996 2 CGTTTTT 9265 0.0 43.35888 1 CGTAAGG 135 0.0 40.74074 2 ACAACGA 55 7.8216544E-11 40.0 13 GTTTTTT 10525 0.0 39.33872 2 TATGGGC 235 0.0 39.319145 4 ATAGGGC 245 0.0 38.612244 4 AATCGTT 240 0.0 38.5 22 CCAATCA 250 0.0 37.84 41 TCGTTGA 245 0.0 37.714287 24 TAATCGT 245 0.0 37.714287 21 GCGTAAG 100 0.0 37.4 1 GTAGGGT 260 0.0 37.23077 4 GCGTTCG 65 1.0913936E-11 37.23077 44 >>END_MODULE