##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546022_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 601745 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.659817696864952 28.0 23.0 30.0 16.0 33.0 2 26.0711480776741 30.0 25.0 31.0 10.0 33.0 3 26.334625131908034 30.0 25.0 31.0 16.0 33.0 4 28.26431461831839 32.0 19.0 35.0 10.0 37.0 5 31.211368602979668 33.0 30.0 35.0 19.0 37.0 6 29.779956626145626 33.0 28.0 35.0 17.0 37.0 7 29.6519821519082 32.0 28.0 35.0 17.0 35.0 8 32.32633258273854 33.0 32.0 35.0 28.0 35.0 9 26.965553515193314 30.0 23.0 34.0 10.0 35.0 10 31.290297385104985 34.0 28.0 37.0 17.0 37.0 11 33.622373264422635 35.0 32.0 37.0 27.0 39.0 12 33.193847892379665 35.0 31.0 38.0 24.0 39.0 13 33.56603544690857 35.0 32.0 38.0 25.0 39.0 14 33.3019285577778 36.0 31.0 39.0 22.0 40.0 15 32.018399820521985 34.0 27.0 38.0 18.0 40.0 16 30.46910900796849 33.0 26.0 38.0 17.0 40.0 17 30.79323799948483 33.0 27.0 38.0 17.0 40.0 18 31.679241206823487 34.0 28.0 38.0 18.0 39.0 19 31.403144188983706 34.0 27.0 37.0 18.0 39.0 20 32.056233122003505 34.0 30.0 37.0 21.0 39.0 21 32.894310713009666 35.0 31.0 37.0 24.0 39.0 22 33.30330954141704 35.0 31.0 38.0 25.0 39.0 23 34.57263126407365 35.0 33.0 38.0 29.0 40.0 24 34.20697970070378 35.0 33.0 38.0 27.0 40.0 25 32.92429849853343 35.0 31.0 38.0 23.0 40.0 26 26.558831398682166 33.0 21.0 36.0 0.0 39.0 27 29.879084994474404 34.0 24.0 37.0 15.0 39.0 28 31.393096743637255 34.0 29.0 37.0 20.0 39.0 29 32.68455076485887 35.0 30.0 37.0 23.0 39.0 30 32.44278390348071 35.0 30.0 38.0 22.0 39.0 31 31.288703686777623 34.0 29.0 37.0 19.0 39.0 32 31.65102493581168 34.0 30.0 37.0 20.0 39.0 33 31.361521907120125 34.0 30.0 37.0 18.0 39.0 34 31.350811390206815 34.0 30.0 38.0 16.0 39.0 35 30.547677172224116 34.0 29.0 37.0 12.0 39.0 36 30.287028558608714 34.0 27.0 37.0 10.0 39.0 37 30.413685198879925 34.0 28.0 37.0 10.0 39.0 38 30.110530207978464 34.0 27.0 37.0 10.0 39.0 39 29.959055746204786 34.0 27.0 37.0 10.0 39.0 40 29.843305719199993 34.0 27.0 37.0 10.0 39.0 41 29.25383841992871 33.0 26.0 36.0 10.0 38.0 42 29.443805931083766 33.0 26.0 36.0 10.0 38.0 43 28.99476356263866 33.0 25.0 36.0 10.0 38.0 44 28.796340642631016 33.0 24.0 36.0 10.0 38.0 45 28.311791539605647 32.0 24.0 35.0 9.0 38.0 46 27.902272557312482 31.0 23.0 35.0 8.0 38.0 47 27.951346500594106 31.0 23.0 35.0 9.0 38.0 48 27.975114043323998 31.0 23.0 35.0 9.0 38.0 49 27.772725988583204 31.0 24.0 35.0 8.0 38.0 50 29.622996451985475 34.0 26.0 37.0 10.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 3.0 11 12.0 12 30.0 13 64.0 14 175.0 15 396.0 16 754.0 17 1417.0 18 2529.0 19 4071.0 20 5943.0 21 8321.0 22 11457.0 23 15040.0 24 19399.0 25 24605.0 26 29068.0 27 32497.0 28 36088.0 29 41686.0 30 49940.0 31 58582.0 32 65234.0 33 66406.0 34 58783.0 35 43704.0 36 21247.0 37 4180.0 38 112.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.938985783014402 23.61664824801203 26.018496206865034 23.425869762108533 2 39.28025991075954 16.705248901112597 30.61645713715943 13.398034050968432 3 30.19086157757854 14.428038454827211 41.04678892221788 14.334311045376364 4 27.0689411627849 24.591147412940696 33.83825374535726 14.501657678917148 5 19.795095929338842 29.041205161654855 37.238863638252084 13.924835270754224 6 18.845524266923697 34.93207255565065 35.85389159860073 10.368511578824917 7 78.22998113818976 3.4409924469667383 16.55568388603146 1.7733425288120381 8 79.89530448944319 2.333380418615859 15.950111758302935 1.8212033336380027 9 67.25423559813542 3.567624159735436 16.254393472318007 12.923746769811132 10 42.555567557686395 23.341614803612824 23.256861295066848 10.845956343633931 11 35.43378008957283 21.400427091209732 30.128542821294737 13.037249997922709 12 31.584475151434578 21.313679382462674 33.775270255673085 13.326575210429667 13 20.14973119843123 30.48965924104064 34.44249640628506 14.918113154243077 14 16.416089871955727 31.142261256844677 37.21593033593964 15.225718535259952 15 14.691605248070196 20.343500984636346 46.452899484000696 18.511994283292758 16 16.875919201655186 17.12818552709204 43.999700869969836 21.996194401282935 17 18.29828249507682 18.371403169116487 36.10582555733741 27.224488778469286 18 21.201173254451636 20.587125775868515 39.676108650674294 18.53559231900556 19 26.795071001836323 21.586884810010883 33.781252856276325 17.83679133187646 20 27.44567881743928 21.741102958894547 33.15241505953519 17.660803164130986 21 22.039402072306373 23.815569718069945 35.828631729387034 18.316396480236648 22 21.605497345220982 21.30121563120591 34.074566469185456 23.018720554387656 23 18.759607474927087 25.27116968150961 34.54785665024222 21.42136619332109 24 18.42242145759416 21.35721942018629 43.297908582539115 16.92245053968043 25 18.628821178406135 21.685763903314527 40.09721725980274 19.5881976584766 26 14.266674421889672 39.28840289491396 28.882998612369025 17.561924070827345 27 17.508413032098314 27.498525122767948 36.30474702739532 18.688314817738412 28 16.79365844336056 23.67780372084521 41.865241921411894 17.66329591438234 29 17.700188618102352 22.534296088874857 40.12048292881536 19.64503236420743 30 19.765847659722972 25.230787127437704 36.84617238198905 18.157192830850278 31 25.882392043141202 23.350588704517694 32.873559398083906 17.893459854257202 32 26.275914216154682 22.44090104612419 33.33737712818552 17.9458076095356 33 25.43269989779724 23.73630026007694 31.54475733076303 19.286242511362786 34 19.338756449991276 24.541790957963922 33.18964012995538 22.929812462089423 35 20.49722058346974 24.23784161064903 34.00078106174542 21.264156744135803 36 26.396230961619953 24.32641733624708 29.670873875146448 19.606477826986517 37 19.65583428196329 29.603569618359938 30.2945599880348 20.446036111641973 38 19.960115995978363 29.99626087462297 28.890476863123084 21.153146266275584 39 20.86099593681709 28.195996643096326 29.243948848764845 21.69905857132174 40 23.48586195149108 24.504898254243905 29.322221206657307 22.687018587607707 41 19.10576739316488 23.182909704276728 30.54300409641958 27.168318806138814 42 21.00042376754273 24.096751946422486 28.016352441648873 26.886471844385913 43 20.850526385761412 24.224214575941634 29.944910219445113 24.980348818851837 44 19.66763329981969 26.417003880381223 30.91758136752279 22.997781452276296 45 19.035638019426834 31.454519771664074 27.41127886397062 22.09856334493847 46 20.717413522339196 27.880414461275127 28.657820172996868 22.74435184338881 47 19.608472027187595 25.943879882674555 30.14133893925168 24.306309150886175 48 20.372583070902124 23.976933751007486 33.41731131957889 22.233171858511497 49 21.20798677180533 24.23634596049822 32.324489609386035 22.231177658310415 50 19.32413231518334 29.02392209324548 30.620113170861412 21.03183242070977 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 130.0 1 359.5 2 589.0 3 6805.0 4 13021.0 5 10300.0 6 7579.0 7 7464.0 8 7349.0 9 7644.0 10 7939.0 11 8167.0 12 8395.0 13 8221.0 14 8047.0 15 7714.0 16 7381.0 17 6976.0 18 6571.0 19 6277.0 20 5983.0 21 5617.5 22 5252.0 23 5060.5 24 4869.0 25 5005.5 26 5142.0 27 5617.0 28 6092.0 29 6963.0 30 7834.0 31 8839.0 32 9844.0 33 11159.0 34 12474.0 35 14243.0 36 16012.0 37 17139.0 38 18266.0 39 21183.0 40 24100.0 41 29742.5 42 35385.0 43 40004.5 44 44624.0 45 45317.5 46 46011.0 47 44257.0 48 42503.0 49 41826.0 50 41149.0 51 39388.0 52 37627.0 53 35365.5 54 33104.0 55 31006.0 56 28908.0 57 27286.5 58 25665.0 59 23223.0 60 20781.0 61 19280.0 62 17779.0 63 15742.5 64 13706.0 65 12139.0 66 10572.0 67 8894.0 68 7216.0 69 6087.0 70 4958.0 71 4189.5 72 3421.0 73 2946.5 74 2472.0 75 1943.5 76 1415.0 77 1095.5 78 776.0 79 577.0 80 378.0 81 299.5 82 221.0 83 163.0 84 105.0 85 79.0 86 53.0 87 40.5 88 28.0 89 21.5 90 15.0 91 8.5 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 1.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 601745.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 50.13459682845115 #Duplication Level Percentage of deduplicated Percentage of total 1 81.11426137648016 40.6663079114744 2 7.5227366339729125 7.542987363817034 3 3.088535540870473 4.645274523956504 4 1.8272993835357827 3.664436715137751 5 1.191885471362209 2.9877348786216404 6 0.8433601246805478 2.5368911899230935 7 0.6195372770677171 2.1742176124190506 8 0.5026657530344076 2.016075589427986 9 0.3994018627481532 1.8021466225269938 >10 2.78556043316662 26.899278259180658 >50 0.09572544115307043 3.1033337332823976 >100 0.008669473850883184 0.6385594465761868 >500 0.0 0.0 >1k 0.0 0.0 >5k 3.612280771201326E-4 1.3227561536564003 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7304 1.2138031890584882 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.019775818660728382 0.0 2 0.0 0.0 0.0 0.08043274144363476 0.0 3 0.0 0.0 0.0 0.10768681085842009 0.0 4 0.0 0.0 0.0 0.14806936493032763 0.0 5 0.0 0.0 0.0 0.2544267089880265 0.0 6 0.0 0.0 0.0 0.35380435234193885 0.0 7 0.0 0.0 0.0 0.4240999094300742 0.0 8 0.0 0.0 0.0 0.6100590781809571 0.0 9 0.0 0.0 0.0 0.715419322138115 0.0 10 0.0 0.0 0.0 0.8498616523610499 0.0 11 0.0 0.0 0.0 0.9754962650292067 0.0 12 0.0 0.0 0.0 1.0805241422861844 0.0 13 0.0 0.0 0.0 1.1229008965591738 0.0 14 0.0 0.0 0.0 1.1406825150188202 0.0 15 0.0 0.0 0.0 1.1647791007818926 0.0 16 0.0 0.0 0.0 1.2111442554570457 0.0 17 0.0 0.0 0.0 1.2982243309042867 0.0 18 0.0 0.0 0.0 1.4004270912097316 0.0 19 0.0 0.0 0.0 1.44164056203209 0.0 20 0.0 0.0 0.0 1.4916617504092264 0.0 21 0.0 0.0 0.0 1.5435109556373547 0.0 22 0.0 0.0 0.0 1.5960248942658435 0.0 23 0.0 0.0 0.0 1.6555185335981188 0.0 24 0.0 0.0 0.0 1.705041171924985 0.0 25 0.0 0.0 0.0 1.7406044088442778 0.0 26 0.0 0.0 0.0 1.7836458965176278 0.0 27 0.0 0.0 0.0 1.8381540353471986 0.0 28 0.0 0.0 0.0 1.8905017906255972 0.0 29 0.0 0.0 0.0 1.9549809304605772 0.0 30 0.0 0.0 0.0 2.0423933726079984 0.0 31 0.0 0.0 0.0 2.117508246848748 0.0 32 0.0 0.0 0.0 2.1884685373372443 0.0 33 0.0 0.0 0.0 2.263251044877814 0.0 34 0.0 0.0 0.0 2.3340451520162193 0.0 35 0.0 0.0 0.0 2.4319271452193205 0.0 36 0.0 0.0 0.0 2.5092024030112423 0.0 37 0.0 0.0 0.0 2.582821627101181 0.0 38 0.0 0.0 0.0 2.671563536049323 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTATCGT 20 7.853487E-4 44.000004 21 GCTCGAA 30 2.5256977E-6 44.000004 21 GACGTAG 25 4.4403023E-5 44.0 1 CTAACGG 25 4.4403023E-5 44.0 2 TACGTTG 25 4.4403023E-5 44.0 1 CGTTTTT 7590 0.0 43.304348 1 CGGTCTA 95 0.0 41.68421 31 CACGACG 70 0.0 40.857143 26 TACCGGG 60 3.6379788E-12 40.333336 3 TATCGGG 55 7.8216544E-11 40.0 3 ATGCGAG 105 0.0 39.80952 1 CGCATGG 95 0.0 39.368423 2 GTTTTTT 8600 0.0 39.011623 2 CGGGAAT 625 0.0 38.719997 9 AACGTTG 40 4.1201747E-7 38.500004 1 TAACGCC 40 4.1201747E-7 38.500004 12 ACGGGTA 40 4.1201747E-7 38.500004 5 TCGATAG 40 4.1201747E-7 38.500004 1 TGCCTAA 40 4.1201747E-7 38.500004 40 TCACGAC 75 0.0 38.13333 25 >>END_MODULE