##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546017_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 686734 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.001611977854598 31.0 28.0 33.0 23.0 33.0 2 28.709241132665632 31.0 28.0 33.0 16.0 33.0 3 28.213238313524595 31.0 27.0 33.0 16.0 34.0 4 32.332329548267595 35.0 32.0 35.0 26.0 37.0 5 33.67937658540279 35.0 33.0 35.0 28.0 37.0 6 33.4230706503537 35.0 33.0 37.0 28.0 37.0 7 34.49634356242738 35.0 35.0 37.0 32.0 37.0 8 34.83954049166053 35.0 35.0 37.0 32.0 37.0 9 36.561923539536416 39.0 37.0 39.0 32.0 39.0 10 36.10749868216806 38.0 35.0 39.0 31.0 39.0 11 36.27584625196947 38.0 35.0 39.0 31.0 39.0 12 35.09218998913699 37.0 34.0 39.0 29.0 39.0 13 35.63535226157435 37.0 35.0 39.0 30.0 39.0 14 36.2735964725789 38.0 35.0 40.0 30.0 41.0 15 36.75437068792284 38.0 35.0 40.0 31.0 41.0 16 36.312694580434346 38.0 34.0 40.0 31.0 41.0 17 35.93345458357967 38.0 34.0 40.0 30.0 41.0 18 35.54721770001194 37.0 34.0 39.0 29.0 41.0 19 35.05332049964033 37.0 33.0 39.0 27.0 41.0 20 35.606901653333026 37.0 34.0 39.0 30.0 41.0 21 35.84995937291586 37.0 34.0 40.0 30.0 41.0 22 36.21324705053194 38.0 35.0 40.0 31.0 41.0 23 36.53848506117361 38.0 35.0 40.0 32.0 41.0 24 36.21619433434197 37.0 35.0 40.0 31.0 41.0 25 35.86836533504967 37.0 35.0 40.0 30.0 41.0 26 35.99794389093885 37.0 35.0 40.0 31.0 41.0 27 36.28354355543777 38.0 35.0 40.0 31.0 41.0 28 36.20761022462846 38.0 35.0 40.0 31.0 41.0 29 36.36684072726849 38.0 35.0 40.0 31.0 41.0 30 35.995656251183135 38.0 35.0 40.0 31.0 41.0 31 35.34642670961391 37.0 34.0 40.0 29.0 41.0 32 35.39387302798463 37.0 34.0 40.0 29.0 41.0 33 35.168509204437235 38.0 34.0 40.0 27.0 41.0 34 34.92924043370505 38.0 34.0 40.0 25.0 41.0 35 34.712759234288676 38.0 34.0 40.0 24.0 41.0 36 34.33543701054557 37.0 34.0 40.0 23.0 41.0 37 34.26383432304211 37.0 34.0 40.0 22.0 41.0 38 34.105861949459324 37.0 33.0 40.0 21.0 41.0 39 33.88878954587948 37.0 33.0 40.0 21.0 41.0 40 33.705182792755274 36.0 33.0 40.0 20.0 41.0 41 33.41514327235873 36.0 33.0 40.0 18.0 40.0 42 33.58040231006474 36.0 33.0 40.0 18.0 41.0 43 33.36464628225776 36.0 33.0 40.0 18.0 40.0 44 33.23915810197253 36.0 33.0 40.0 18.0 40.0 45 33.164961979456386 36.0 33.0 39.0 18.0 40.0 46 32.967667248163046 35.0 32.0 39.0 18.0 40.0 47 32.941796969423386 35.0 32.0 39.0 18.0 40.0 48 32.92761826267521 35.0 32.0 39.0 18.0 40.0 49 32.89936569326697 35.0 32.0 39.0 18.0 40.0 50 33.10283894491899 35.0 33.0 39.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 2.0 12 2.0 13 10.0 14 33.0 15 69.0 16 154.0 17 334.0 18 678.0 19 1144.0 20 1771.0 21 2593.0 22 3614.0 23 5256.0 24 7341.0 25 11046.0 26 15695.0 27 18200.0 28 18208.0 29 18104.0 30 20447.0 31 24850.0 32 33203.0 33 48874.0 34 74658.0 35 65192.0 36 73639.0 37 103600.0 38 114222.0 39 23794.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.77232523801064 23.39188099031066 28.195924477308537 20.639869294370165 2 35.39885894684113 20.926443135187714 30.736500595572668 12.938197322398484 3 28.496040679506184 19.16913972513375 38.64596772549488 13.688851869865188 4 25.416391208240746 25.813488191934574 34.56695023109385 14.203170368730833 5 20.894698675178454 29.766255930243734 35.49642219549345 13.842623199084361 6 18.540512046876955 38.529911144635335 32.577824892898846 10.35175191558886 7 79.15437418272577 4.71041189164946 13.617790876816935 2.5174230488078355 8 80.54268464936933 3.2757952860933055 13.35262270398728 2.828897360550082 9 76.90998261335538 4.832438760859372 14.472852662020522 3.7847259637647177 10 41.20940567963724 23.48391080097971 21.551867244085773 13.754816275297276 11 34.874201655954124 22.947604166970034 27.486042630771156 14.692151546304682 12 31.844498743327108 21.181272515996007 31.29392166399217 15.680307076684713 13 21.820384603063196 29.140540587767603 31.799357538726785 17.239717270442412 14 17.316602935052 31.29348481362507 33.948661344858415 17.44125090646451 15 17.316020467895868 22.641663293211053 42.64795393849729 17.394362300395784 16 19.314174047010923 19.94207364132255 41.46423506044553 19.279517251220994 17 19.29116659434366 20.513182687911186 33.666747241289926 26.528903476455223 18 21.839314785637526 22.15908925435467 36.21620598368509 19.78538997632271 19 25.28271499590817 23.60986932349352 31.202911170846352 19.904504509751956 20 26.42405938835124 22.75451630471187 31.454682599084943 19.366741707851947 21 22.13666426884354 25.030652334091513 33.391677126806016 19.44100627025894 22 22.52837343134314 22.254905101538586 32.113307335882595 23.103414131235674 23 20.66651716676326 25.55429030745529 31.72087008943783 22.058322436343623 24 19.791214647884043 23.095405207838844 38.227610690602184 18.885769453674932 25 19.439695719157633 23.587589954771428 36.14951349430784 20.8232008317631 26 18.820533132188007 27.16219089196108 32.66053522906977 21.356740746781142 27 18.382809064353882 27.54953155078968 33.60922860962178 20.458430775234664 28 17.425961143616014 25.651999172896637 37.83196987479868 19.09006980868866 29 18.684818284808966 23.501384815663705 36.80406096101257 21.00973593851477 30 20.367420282088844 25.859648714058135 34.467202730606026 19.30572827324699 31 25.054533487492975 24.507888061461934 30.674759077022546 19.76281937402255 32 25.403576930805816 23.961097018641862 31.195484714605655 19.43984133594667 33 24.486336776685004 25.298004758756665 30.13801559264577 20.07764287191256 34 20.404698180081372 25.322468379314262 32.06496256192354 22.207870878680826 35 20.865138467004694 25.11729432356633 32.293872154283896 21.72369505514508 36 25.364697248133922 25.73267087402109 28.67762481543072 20.225007062414267 37 20.839073061767728 28.643987337164024 30.047296333078016 20.469643267990225 38 21.437121214327526 29.341200523055505 27.817320825821934 21.40435743679503 39 21.284660436209656 28.005312100463936 28.475799945830556 22.234227517495857 40 22.79164858591536 25.632486523166175 28.92590144073251 22.649963450185954 41 19.654917333348866 23.955126730291497 30.14500519851937 26.244950737840274 42 21.91707415098131 24.951728034435458 27.881100979418523 25.250096835164708 43 21.11195892441615 25.481045062571532 29.376731019579633 24.03026499343268 44 20.707435484481618 26.934591850702017 29.89556363890531 22.46240902591105 45 19.81975553853457 30.32061904609354 27.506720214813885 22.352905200558006 46 21.818491584805763 28.330474390375315 28.785381239315367 21.06565278550356 47 21.137150628918913 26.774267765976344 29.734074619867375 22.35450698523737 48 21.50672603948545 25.04492277941678 31.474049632026375 21.974301549071402 49 21.01920102980193 25.003130760964215 31.270768594535873 22.706899614697974 50 20.048082663738796 27.885032632722424 30.738102380252037 21.328782323286745 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 242.0 1 533.5 2 825.0 3 8510.5 4 16196.0 5 11430.0 6 6664.0 7 6614.0 8 6564.0 9 6767.5 10 6971.0 11 6872.5 12 6774.0 13 6403.5 14 6033.0 15 5709.5 16 5386.0 17 5034.5 18 4683.0 19 4275.0 20 3867.0 21 3845.0 22 3823.0 23 4068.0 24 4313.0 25 4337.5 26 4362.0 27 5085.5 28 5809.0 29 7097.0 30 8385.0 31 10154.0 32 11923.0 33 13410.5 34 14898.0 35 16920.5 36 18943.0 37 20182.0 38 21421.0 39 25409.0 40 29397.0 41 36993.0 42 44589.0 43 48886.0 44 53183.0 45 54855.0 46 56527.0 47 56076.0 48 55625.0 49 54245.0 50 52865.0 51 49516.5 52 46168.0 53 42244.5 54 38321.0 55 35035.0 56 31749.0 57 29994.0 58 28239.0 59 26362.0 60 24485.0 61 22513.0 62 20541.0 63 18079.0 64 15617.0 65 13039.0 66 10461.0 67 8846.5 68 7232.0 69 6276.0 70 5320.0 71 4401.5 72 3483.0 73 2767.5 74 2052.0 75 1712.5 76 1373.0 77 1050.0 78 727.0 79 528.0 80 329.0 81 259.0 82 189.0 83 136.0 84 83.0 85 63.0 86 43.0 87 37.5 88 32.0 89 21.0 90 10.0 91 8.5 92 7.0 93 5.5 94 4.0 95 2.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 686734.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.33253405650448 #Duplication Level Percentage of deduplicated Percentage of total 1 72.39173322762551 24.129999132192147 2 8.372303149319938 5.581401597121731 3 4.150054706598541 4.149955195321579 4 2.667321040289094 3.5563427766026883 5 1.9473350268154468 3.245480555037498 6 1.3879392897635663 2.7758120186642827 7 1.0911349256956147 2.5459204449693393 8 0.8893078666576697 2.37143078016673 9 0.7255028733052661 2.1764564309285674 >10 6.05867461256843 40.74464087012996 >50 0.299431599537964 6.216266910672387 >100 0.01838615083102219 0.9151997847896591 >500 4.3776549597671874E-4 0.08842650981864372 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 4.3776549597671874E-4 1.502666993584807 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10298 1.4995616934650098 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.037569131570593564 0.0 2 0.0 0.0 0.0 0.1338218291216104 0.0 3 1.4561678903330839E-4 0.0 0.0 0.18537017243940157 0.0 4 1.4561678903330839E-4 0.0 0.0 0.262547070627055 0.0 5 1.4561678903330839E-4 0.0 0.0 0.44733477591032333 0.0 6 1.4561678903330839E-4 0.0 0.0 0.6465385433078892 0.0 7 1.4561678903330839E-4 0.0 0.0 0.7876412118811651 0.0 8 1.4561678903330839E-4 0.0 0.0 1.149353315839903 0.0 9 1.4561678903330839E-4 0.0 0.0 1.3321023860767052 0.0 10 1.4561678903330839E-4 0.0 0.0 1.6326554386414536 0.0 11 1.4561678903330839E-4 0.0 0.0 1.8596720127443813 0.0 12 1.4561678903330839E-4 0.0 0.0 2.0676127874839456 0.0 13 1.4561678903330839E-4 0.0 0.0 2.1581864302626634 0.0 14 1.4561678903330839E-4 0.0 0.0 2.1977941968797237 0.0 15 1.4561678903330839E-4 0.0 0.0 2.242061700745849 0.0 16 1.4561678903330839E-4 0.0 0.0 2.3358389128833 0.0 17 1.4561678903330839E-4 0.0 0.0 2.455099063101579 0.0 18 1.4561678903330839E-4 0.0 0.0 2.6336252464564156 0.0 19 1.4561678903330839E-4 0.0 0.0 2.7140057140028016 0.0 20 2.9123357806661677E-4 0.0 0.0 2.8061811414608857 0.0 21 2.9123357806661677E-4 0.0 0.0 2.908112893784202 0.0 22 2.9123357806661677E-4 0.0 0.0 3.002763806655852 0.0 23 2.9123357806661677E-4 0.0 0.0 3.121295872928965 0.0 24 2.9123357806661677E-4 0.0 0.0 3.2163836361677154 0.0 25 2.9123357806661677E-4 0.0 0.0 3.292686833621169 0.0 26 2.9123357806661677E-4 0.0 0.0 3.3637478266694236 0.0 27 2.9123357806661677E-4 0.0 0.0 3.4547583198152414 0.0 28 2.9123357806661677E-4 0.0 0.0 3.5379055063532605 0.0 29 2.9123357806661677E-4 0.0 0.0 3.6348862878494437 0.0 30 2.9123357806661677E-4 0.0 0.0 3.7502147847638243 0.0 31 2.9123357806661677E-4 0.0 0.0 3.849816668462607 0.0 32 2.9123357806661677E-4 0.0 0.0 3.939516610507125 0.0 33 5.824671561332335E-4 0.0 0.0 4.033876289800709 0.0 34 5.824671561332335E-4 0.0 0.0 4.138720377904691 0.0 35 5.824671561332335E-4 0.0 0.0 4.259145462435237 0.0 36 5.824671561332335E-4 0.0 0.0 4.360203514024353 0.0 37 5.824671561332335E-4 0.0 0.0 4.465921302862535 0.0 38 7.28083945166542E-4 0.0 0.0 4.580376099042716 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCGAAC 20 7.8542664E-4 44.0 37 GGCGTAA 20 7.8542664E-4 44.0 39 TAACGTG 20 7.8542664E-4 44.0 43 TTACGAG 20 7.8542664E-4 44.0 1 CGGTCTA 55 1.8189894E-12 44.0 31 GCGTAAT 20 7.8542664E-4 44.0 40 CGTTTTT 6280 0.0 43.019108 1 CGGGAAC 55 7.8216544E-11 40.0 6 TACGGGA 225 0.0 39.11111 4 TTAACGG 45 2.3484972E-8 39.11111 2 TATACGG 85 0.0 38.823532 2 ACGGGAG 250 0.0 38.72 5 ACCCGCT 240 0.0 38.5 34 ATAGGGC 315 0.0 38.4127 4 GTTTTTT 7300 0.0 38.394524 2 TAACGGG 190 0.0 38.210526 3 ATAGGGA 530 0.0 38.188683 4 CGCGACC 250 0.0 37.84 10 TACGGGT 35 7.2859275E-6 37.714287 4 TTATACG 35 7.2859275E-6 37.714287 1 >>END_MODULE