##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546016_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 691886 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.970149706743598 31.0 28.0 33.0 23.0 33.0 2 28.672161309811155 31.0 28.0 33.0 16.0 33.0 3 28.211479925883744 31.0 27.0 33.0 16.0 34.0 4 32.32623437965214 35.0 32.0 35.0 26.0 37.0 5 33.70805161543954 35.0 33.0 35.0 28.0 37.0 6 33.50882948925112 35.0 33.0 37.0 28.0 37.0 7 34.555611762631415 35.0 35.0 37.0 32.0 37.0 8 34.86442997834904 35.0 35.0 37.0 32.0 37.0 9 36.657751421476945 39.0 37.0 39.0 32.0 39.0 10 36.090545263237004 38.0 35.0 39.0 31.0 39.0 11 36.32285954622582 38.0 35.0 39.0 32.0 39.0 12 35.03777934515224 37.0 34.0 39.0 28.0 39.0 13 35.59620515518453 37.0 35.0 39.0 30.0 39.0 14 36.2678909531339 38.0 35.0 40.0 30.0 41.0 15 36.78296713620452 38.0 35.0 40.0 31.0 41.0 16 36.32725477896648 38.0 34.0 40.0 31.0 41.0 17 35.96823031539878 38.0 34.0 40.0 30.0 41.0 18 35.618958903634415 38.0 34.0 39.0 29.0 41.0 19 35.11472410194743 37.0 33.0 39.0 27.0 41.0 20 35.562007324906126 37.0 34.0 39.0 30.0 41.0 21 35.71890745007126 37.0 34.0 39.0 30.0 40.0 22 36.16079961149669 38.0 35.0 40.0 31.0 41.0 23 36.542196257765006 38.0 35.0 40.0 32.0 41.0 24 36.059694805213574 37.0 35.0 40.0 31.0 41.0 25 35.74686003185496 37.0 34.0 40.0 30.0 41.0 26 35.948643273602876 37.0 35.0 40.0 31.0 41.0 27 36.28586790309386 38.0 35.0 40.0 31.0 41.0 28 36.19720878873109 38.0 35.0 40.0 31.0 41.0 29 36.35827578531723 38.0 35.0 40.0 31.0 41.0 30 36.015118097490046 38.0 35.0 40.0 31.0 41.0 31 35.345938492757476 37.0 34.0 40.0 29.0 41.0 32 35.43083542664543 37.0 34.0 40.0 29.0 41.0 33 35.22933402323504 38.0 34.0 40.0 28.0 41.0 34 34.92477807037576 38.0 34.0 40.0 25.0 41.0 35 34.73809269157058 38.0 34.0 40.0 24.0 41.0 36 34.343412064993366 37.0 34.0 40.0 23.0 41.0 37 34.26497428767167 37.0 34.0 40.0 22.0 41.0 38 34.1506678845937 37.0 34.0 40.0 22.0 41.0 39 33.87718641510307 37.0 33.0 40.0 21.0 41.0 40 33.67761596563596 36.0 33.0 40.0 20.0 41.0 41 33.38070722633498 36.0 33.0 40.0 18.0 40.0 42 33.5581699875413 36.0 33.0 40.0 18.0 40.0 43 33.341407399484886 36.0 33.0 40.0 18.0 40.0 44 33.21633188126368 36.0 33.0 40.0 18.0 40.0 45 33.14601104806283 36.0 33.0 39.0 18.0 40.0 46 32.93112593693181 35.0 32.0 39.0 18.0 40.0 47 32.89841390055587 35.0 32.0 39.0 18.0 40.0 48 32.899571605726955 35.0 32.0 39.0 18.0 40.0 49 32.92518709729637 35.0 32.0 39.0 18.0 40.0 50 33.158138768525454 35.0 33.0 39.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 4.0 11 3.0 12 5.0 13 8.0 14 26.0 15 53.0 16 159.0 17 356.0 18 634.0 19 1138.0 20 1674.0 21 2599.0 22 3699.0 23 5057.0 24 7404.0 25 11091.0 26 15732.0 27 18570.0 28 18278.0 29 18421.0 30 20447.0 31 24957.0 32 33275.0 33 49267.0 34 75880.0 35 65502.0 36 75181.0 37 106465.0 38 114962.0 39 21039.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.795185912130034 23.4437465131539 27.986113319246236 20.774954255469833 2 35.61583844737427 20.822216376686335 30.669214292527958 12.89273088341143 3 28.419710761599454 19.069760047175404 38.82778376784615 13.682745423378995 4 25.218605377186414 25.88648997089116 34.579106962707726 14.315797689214696 5 20.90676787794521 29.825433669708595 35.397594401389824 13.870204050956373 6 18.684580985884956 38.34735780171878 32.72533336416693 10.242727848229332 7 78.89001945407192 4.819146506794472 13.718444946132744 2.57238909300087 8 80.27348436014026 3.3311846171190056 13.52809566893968 2.8672353538010595 9 76.69775078553404 4.893291669436872 14.66253111061649 3.746426434412606 10 41.11472121129782 23.212205478937282 21.63521158109862 14.037861728666284 11 34.842589675177706 22.878046383363735 27.572461359241263 14.706902582217301 12 31.964658917798598 20.774954255469833 31.29966497370954 15.960721853022031 13 21.588383057324474 29.162896777792874 31.91884212138994 17.329878043492712 14 17.404601336058253 31.27148113995658 33.89214408153944 17.43177344244572 15 17.36557756624646 22.700705029441266 42.77062984364476 17.16308756066751 16 19.2180503724602 19.880009134452788 41.614225464888726 19.28771502819829 17 19.178448472725275 20.586917497969317 33.69196659565304 26.54266743365237 18 21.819056896656384 22.20756020500487 36.21391385286015 19.75946904547859 19 25.11338573117537 23.653752207733643 31.261797463744028 19.971064597346963 20 26.36951752167265 22.377530402407334 31.60925354754974 19.643698528370283 21 22.07112154314439 25.033314736820806 33.41518689495091 19.4803768250839 22 22.640579517434954 22.02443755185103 32.139832284509296 23.19515064620472 23 20.704856002289397 25.48440060934894 31.75971186004631 22.05103152831536 24 20.01370167917836 22.857378238611563 38.273068106595595 18.855851975614478 25 19.24160916682806 23.6569319223109 36.100600387925184 21.000858522935857 26 18.74398383548735 27.043906077012686 32.68833304908612 21.523777038413844 27 18.37571507444868 27.4812613638663 33.60322365245141 20.5397999092336 28 17.35069072072567 25.693828174005546 37.87184593993808 19.083635165330705 29 18.63934231939944 23.427414342825262 36.85549353506213 21.077749802713164 30 20.227031620816145 25.832579355558575 34.52693073714455 19.41345828648072 31 24.983595563430967 24.45055977429808 30.792645031117843 19.77319963115311 32 25.251414250324476 23.967387691035807 31.218582251989492 19.56261580665023 33 24.48958354410987 25.285523915789593 30.215093237903357 20.00979930219718 34 20.36390388011898 25.45072454132617 32.056870640539046 22.1285009380158 35 20.818313999705154 25.19403485545307 32.28017332335096 21.707477821490823 36 25.38568492497319 25.765660816955393 28.679580162049817 20.1690740960216 37 20.752551720948247 28.55007905926699 30.18980005376608 20.50756916601868 38 21.52392157089463 29.072853042264192 27.976718707995246 21.426506678845936 39 21.21115328247717 27.856034086540266 28.635642287891354 22.297170343091203 40 22.77557285448759 25.63818316890355 29.01576271235435 22.570481264254518 41 19.61869440919458 23.846269472138474 30.38636422763288 26.14867189103407 42 22.02024610990828 24.90814960846151 27.903440740237556 25.16816354139266 43 21.259282598578377 25.485556869195214 29.35136713273574 23.903793399490667 44 20.84707596338125 26.832310525144315 29.815027331092114 22.505586180382316 45 19.877696614760236 30.324793390818716 27.454811919882754 22.34269807453829 46 21.913581139089388 28.295123763163293 28.757049571750258 21.034245525997058 47 21.06618720425041 26.816845549700385 29.798984225725043 22.31798302032416 48 21.58274629057388 25.065979077478083 31.473103950650827 21.878170681297206 49 21.086710816521798 24.972177497449003 31.212222822834974 22.728888863194225 50 20.105335271995674 27.85964739855988 30.69681999635778 21.338197333086665 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 201.0 1 518.0 2 835.0 3 8866.5 4 16898.0 5 11806.5 6 6715.0 7 6612.0 8 6509.0 9 6762.0 10 7015.0 11 6948.5 12 6882.0 13 6520.5 14 6159.0 15 5779.0 16 5399.0 17 5079.5 18 4760.0 19 4353.0 20 3946.0 21 3837.0 22 3728.0 23 4040.5 24 4353.0 25 4326.5 26 4300.0 27 4986.0 28 5672.0 29 7000.5 30 8329.0 31 10209.5 32 12090.0 33 13427.0 34 14764.0 35 16952.5 36 19141.0 37 20294.0 38 21447.0 39 25462.5 40 29478.0 41 37110.0 42 44742.0 43 49094.5 44 53447.0 45 55271.0 46 57095.0 47 56559.0 48 56023.0 49 54608.0 50 53193.0 51 49939.0 52 46685.0 53 42683.0 54 38681.0 55 35492.0 56 32303.0 57 29962.0 58 27621.0 59 26134.0 60 24647.0 61 22729.5 62 20812.0 63 18414.5 64 16017.0 65 13351.0 66 10685.0 67 9011.0 68 7337.0 69 6421.0 70 5505.0 71 4533.0 72 3561.0 73 2803.5 74 2046.0 75 1730.5 76 1415.0 77 1063.5 78 712.0 79 544.0 80 376.0 81 286.0 82 196.0 83 133.5 84 71.0 85 54.5 86 38.0 87 34.0 88 30.0 89 23.5 90 17.0 91 11.0 92 5.0 93 3.5 94 2.0 95 1.5 96 1.0 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 691886.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.146237134875165 #Duplication Level Percentage of deduplicated Percentage of total 1 72.08495584612785 23.893450403327595 2 8.434202323681346 5.591241405285141 3 4.28911701508573 4.2650426904377845 4 2.709007811592695 3.5917366129312276 5 1.8976894300193077 3.1450631927883026 6 1.4244830310725587 2.832975140552206 7 1.0996069064972636 2.5513481894533356 8 0.9039628467178027 2.3970373502740077 9 0.7394366912162619 2.2058589521953507 >10 6.09547278229465 40.713263738688326 >50 0.3031719888705887 6.252377906346098 >100 0.018014567436771337 0.9063042481785547 >500 4.393796935797887E-4 0.08752833892902322 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 4.393796935797887E-4 1.5667718306130314 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10758 1.554880428278647 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03772297748473014 0.0 2 0.0 0.0 0.0 0.1279112454941999 0.0 3 0.0 0.0 0.0 0.17618509407619173 0.0 4 0.0 0.0 0.0 0.25192011400722086 0.0 5 0.0 0.0 0.0 0.43836701421910546 0.0 6 0.0 0.0 0.0 0.6398452924325684 0.0 7 0.0 0.0 0.0 0.785100435620897 0.0 8 0.0 0.0 0.0 1.1562598462752534 0.0 9 0.0 0.0 0.0 1.3396715643906656 0.0 10 0.0 0.0 0.0 1.6421780466724287 0.0 11 0.0 0.0 0.0 1.8569533131180571 0.0 12 0.0 0.0 0.0 2.0581425263699513 0.0 13 0.0 0.0 0.0 2.1467409370907924 0.0 14 0.0 0.0 0.0 2.18012794015199 0.0 15 0.0 0.0 0.0 2.2292689836186885 0.0 16 0.0 0.0 0.0 2.327551070552085 0.0 17 0.0 0.0 0.0 2.4342160413709775 0.0 18 0.0 0.0 0.0 2.6072214208699123 0.0 19 0.0 0.0 0.0 2.682956440800941 0.0 20 0.0 0.0 0.0 2.7753126960221772 0.0 21 0.0 0.0 0.0 2.8832784591681286 0.0 22 0.0 0.0 0.0 2.988787170140746 0.0 23 1.4453248078440668E-4 0.0 0.0 3.1023897000372895 0.0 24 1.4453248078440668E-4 0.0 0.0 3.188531058584796 0.0 25 1.4453248078440668E-4 0.0 0.0 3.2600746365730773 0.0 26 1.4453248078440668E-4 0.0 0.0 3.331907279522927 0.0 27 1.4453248078440668E-4 0.0 0.0 3.415013455973961 0.0 28 1.4453248078440668E-4 0.0 0.0 3.4943617879246003 0.0 29 1.4453248078440668E-4 0.0 0.0 3.583393796087795 0.0 30 2.8906496156881335E-4 0.0 0.0 3.7001760405615953 0.0 31 4.3359744235322006E-4 0.0 0.0 3.7922432308212626 0.0 32 4.3359744235322006E-4 0.0 0.0 3.8902362527930903 0.0 33 4.3359744235322006E-4 0.0 0.0 3.9846159627453077 0.0 34 4.3359744235322006E-4 0.0 0.0 4.0765386205241905 0.0 35 5.781299231376267E-4 0.0 0.0 4.192742735074853 0.0 36 5.781299231376267E-4 0.0 0.0 4.295216263950998 0.0 37 5.781299231376267E-4 0.0 0.0 4.394510078249885 0.0 38 5.781299231376267E-4 0.0 0.0 4.517796284358984 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCGATT 20 7.8543066E-4 44.0 24 CGAAACT 30 2.5262489E-6 44.0 44 TCGATAG 50 2.7284841E-11 44.0 1 CGTTTTT 6435 0.0 43.042736 1 TCGATTG 45 2.3486791E-8 39.11111 1 TAGTGCG 45 2.3486791E-8 39.11111 1 CGATAGA 45 2.3486791E-8 39.11111 10 CAATTAT 485 0.0 39.010307 44 GGCGATA 215 0.0 38.88372 8 GTTTTTT 7425 0.0 38.755554 2 GCGCGAC 200 0.0 38.5 9 ATAGGGA 680 0.0 38.17647 4 GGGCGAT 915 0.0 37.748634 7 ATAGGGC 420 0.0 37.714287 4 TACGGGA 140 0.0 37.714287 4 ACGGGTA 70 0.0 37.714287 5 AATACGG 35 7.2860057E-6 37.714287 2 AGGGCGA 525 0.0 37.714283 6 TAGGGCA 550 0.0 37.6 5 GTATAGG 300 0.0 37.4 2 >>END_MODULE