##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546013_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 379225 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.075569912321182 31.0 28.0 33.0 25.0 33.0 2 28.835327312281628 31.0 28.0 33.0 16.0 33.0 3 28.254880348078316 31.0 27.0 33.0 16.0 34.0 4 32.28271870261718 35.0 32.0 35.0 26.0 37.0 5 33.70146746654361 35.0 33.0 35.0 28.0 37.0 6 33.48852791878173 35.0 33.0 37.0 28.0 37.0 7 34.46782253279715 35.0 35.0 37.0 32.0 37.0 8 34.82542817588503 35.0 35.0 37.0 32.0 37.0 9 36.56474915946997 39.0 37.0 39.0 32.0 39.0 10 36.243628452765506 38.0 35.0 39.0 31.0 39.0 11 36.335742633001516 38.0 35.0 39.0 32.0 39.0 12 35.10340299294614 37.0 34.0 39.0 29.0 39.0 13 35.3914378007779 37.0 35.0 39.0 30.0 39.0 14 36.07010350056035 38.0 35.0 40.0 29.0 41.0 15 36.62297580591997 38.0 35.0 40.0 31.0 41.0 16 36.145109104093876 38.0 34.0 40.0 31.0 41.0 17 35.77097237787593 37.0 34.0 40.0 30.0 41.0 18 35.42497198233239 37.0 34.0 39.0 29.0 40.0 19 34.85359087612895 37.0 33.0 39.0 27.0 40.0 20 35.35979431735777 36.0 34.0 39.0 30.0 41.0 21 35.623442547300414 36.0 34.0 39.0 30.0 40.0 22 35.96622321840596 37.0 34.0 40.0 31.0 41.0 23 36.29609334827609 37.0 35.0 40.0 32.0 41.0 24 35.99096051156965 37.0 35.0 40.0 31.0 41.0 25 35.653638341354075 36.0 34.0 40.0 30.0 41.0 26 35.764474915947 37.0 34.0 40.0 31.0 41.0 27 36.036189597204825 37.0 35.0 40.0 31.0 41.0 28 35.96323554617971 37.0 35.0 40.0 31.0 41.0 29 36.13272331729185 37.0 35.0 40.0 31.0 41.0 30 35.78370096908168 37.0 35.0 40.0 30.0 41.0 31 35.10599512162964 36.0 34.0 40.0 29.0 41.0 32 35.07120574856616 36.0 34.0 40.0 29.0 41.0 33 34.769780473333775 37.0 34.0 40.0 26.0 41.0 34 34.51118728986749 37.0 34.0 40.0 23.0 41.0 35 34.2750557057156 37.0 34.0 40.0 22.0 41.0 36 33.85392049574791 36.0 33.0 40.0 20.0 41.0 37 33.777635968092824 36.0 33.0 40.0 20.0 41.0 38 33.627701232777376 36.0 33.0 40.0 18.0 41.0 39 33.44467532467532 36.0 33.0 40.0 18.0 41.0 40 33.30233238842376 36.0 33.0 40.0 18.0 40.0 41 33.03563583624497 35.0 33.0 39.0 18.0 40.0 42 33.18755356318808 36.0 33.0 40.0 18.0 40.0 43 32.96391851803019 35.0 33.0 39.0 17.0 40.0 44 32.82013580328301 35.0 32.0 39.0 15.0 40.0 45 32.76203836772365 35.0 32.0 39.0 17.0 40.0 46 32.575281165534975 35.0 32.0 39.0 16.0 40.0 47 32.54526204759707 35.0 32.0 39.0 17.0 40.0 48 32.586113784692465 35.0 32.0 39.0 17.0 40.0 49 32.58272529500956 35.0 32.0 39.0 17.0 40.0 50 32.72326191574923 35.0 32.0 39.0 17.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 4.0 13 7.0 14 19.0 15 40.0 16 100.0 17 218.0 18 361.0 19 693.0 20 1021.0 21 1528.0 22 2214.0 23 3083.0 24 4414.0 25 6585.0 26 9497.0 27 11134.0 28 10869.0 29 10566.0 30 11784.0 31 14310.0 32 18666.0 33 28935.0 34 45954.0 35 36136.0 36 37554.0 37 52421.0 38 58408.0 39 12703.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.075219197046607 23.02168897092755 28.212275034610062 21.69081679741578 2 36.3633726679412 20.044037181093017 30.634319994726084 12.9582701562397 3 27.751598655151955 19.009031577559497 39.60551124002901 13.633858527259543 4 25.160524754433382 25.32797152086492 35.672226250906455 13.839277473795239 5 20.196716988595163 30.069220119981544 36.103896103896105 13.630166787527193 6 18.778034148592525 36.41347485002308 34.31683037774408 10.491660623640318 7 77.97666293097765 4.598061836640517 14.952337003098423 2.472938229283407 8 79.02432592787922 3.3223020634188147 14.743490012525545 2.9098819961764124 9 75.49027622124069 4.590678357175819 16.207792207792206 3.7112532137912853 10 44.306414397784955 22.246687322829455 21.43714153866438 12.009756740721206 11 37.690816797415785 20.821412090447623 28.073307403256642 13.414463708879953 12 34.011734458434965 20.541367262179445 31.333113586920692 14.113784692464895 13 20.64025314786736 33.04423495286439 31.57307666952337 14.742435229744874 14 15.774276484936383 33.20851737095392 34.690750873491986 16.326455270617707 15 14.846331333640977 21.296855428835123 47.99156173775463 15.865251499769267 16 16.67928011075219 17.480123936976728 46.0204364163755 19.820159535895577 17 17.29764651592063 18.72845935790098 34.81547893730635 29.158415188872045 18 21.141802360076472 20.84883644274507 38.497725624629176 19.511635572549277 19 25.177137583228955 22.52936910804931 32.18537807370295 20.10811523501879 20 26.675720218867426 21.621464829586657 32.033489353286306 19.669325598259608 21 21.4893532863076 25.53813698991364 33.81053464302195 19.161975080756807 22 21.85140747577296 22.11352099676973 31.81277605643088 24.222295471026438 23 18.934933087217352 25.8698661744347 32.13738545718241 23.057815281165535 24 18.267255587052542 21.09354604786077 42.2414134089261 18.39778495616059 25 17.59746852132639 22.728723053596152 38.857933944228364 20.8158744808491 26 17.38150174698398 28.092029797613556 33.75726811259806 20.769200342804403 27 17.272068033489354 28.61309249126508 34.69787065726152 19.416968817984046 28 16.12314588964335 25.065594304172983 40.66583163029864 18.14542817588503 29 16.973037115169095 22.10112729909684 39.74764321972444 21.178192366009625 30 19.401410771969147 25.5753180829323 36.48599116619421 18.537279978904344 31 25.964269233304766 23.776386050497724 31.488166655679343 18.771178060518164 32 26.71923000857011 23.348407937240427 32.111279583360805 17.821082470828664 33 25.471685674731358 24.22071329685543 30.668864130793068 19.638736897620145 34 19.489748829850353 25.078251697541038 32.79820686927286 22.63379260333575 35 20.313006790164152 24.3085239633463 33.724042455006916 21.654426791482628 36 26.063682510383018 24.149779154855295 30.203968620212272 19.58256971454941 37 20.2299426461863 29.091963873689764 30.9001252554552 19.777968224668733 38 20.33410244577757 29.115696486254862 28.794251433845343 21.755949634122224 39 20.06513283670644 28.662667281956622 29.069286043905336 22.202913837431602 40 22.646713692398972 24.962225591667217 28.97119124530292 23.419869470630893 41 18.4869141011273 23.348407937240427 30.369569516777638 27.795108444854637 42 21.369899136396597 24.04403718109302 28.001845869866177 26.584217812644205 43 21.103566484277145 24.751532731228163 29.518887204166393 24.6260135803283 44 20.03322565759114 27.159601819500296 29.715604192761553 23.091568330147012 45 18.282549937372274 31.421715340497062 27.950161513613292 22.345573208517372 46 21.25914694442613 28.444063550662534 29.34142000131848 20.955369503592856 47 20.440635506625355 26.043905333245437 30.10930186564704 23.40615729448217 48 21.079570176016876 23.597072977783636 32.43457050563649 22.88878634056299 49 20.824049047399303 23.434900125255457 33.2971191245303 22.44393170281495 50 19.428835124266598 28.180895246885097 31.118465291054125 21.271804337794187 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 151.0 1 307.0 2 463.0 3 5063.0 4 9663.0 5 6853.5 6 4044.0 7 4050.0 8 4056.0 9 4286.0 10 4516.0 11 4527.0 12 4538.0 13 4223.0 14 3908.0 15 3670.5 16 3433.0 17 3133.0 18 2833.0 19 2663.5 20 2494.0 21 2406.5 22 2319.0 23 2343.0 24 2367.0 25 2372.0 26 2377.0 27 2858.5 28 3340.0 29 3385.0 30 3430.0 31 4460.5 32 5491.0 33 6583.0 34 7675.0 35 8288.5 36 8902.0 37 10046.0 38 11190.0 39 13816.0 40 16442.0 41 21659.0 42 26876.0 43 30563.0 44 34250.0 45 34315.5 46 34381.0 47 32254.0 48 30127.0 49 28644.5 50 27162.0 51 25928.0 52 24694.0 53 22484.0 54 20274.0 55 18453.5 56 16633.0 57 15817.5 58 15002.0 59 13658.0 60 12314.0 61 11195.0 62 10076.0 63 8997.5 64 7919.0 65 6666.0 66 5413.0 67 4539.5 68 3666.0 69 3076.5 70 2487.0 71 2127.5 72 1768.0 73 1425.0 74 1082.0 75 887.5 76 693.0 77 539.0 78 385.0 79 289.5 80 194.0 81 159.5 82 125.0 83 78.0 84 31.0 85 24.0 86 17.0 87 13.0 88 9.0 89 6.0 90 3.0 91 3.5 92 4.0 93 5.0 94 6.0 95 3.0 96 0.0 97 0.5 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 379225.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.78279700425638 #Duplication Level Percentage of deduplicated Percentage of total 1 73.58422385795751 26.330493450250525 2 8.524203908070556 6.100397161307552 3 4.011376292083766 4.306147907019602 4 2.4826541580231503 3.553452390732617 5 1.7245902820831316 3.085533198964697 6 1.209418576575664 2.596582765127021 7 0.9457368168362587 2.3688775975412413 8 0.7899206812942385 2.261245711057251 9 0.6152084292318456 1.9812490504659503 >10 5.94100890037986 41.793477702374915 >50 0.16134387701553735 3.5372882055653783 >100 0.009577490416447423 0.45422176018699856 >500 0.0 0.0 >1k 0.0 0.0 >5k 7.367300320344171E-4 1.6310330994062447 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6187 1.6314852660030323 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.6369569516777636E-4 0.0 0.0 0.05036587777704529 0.0 2 2.6369569516777636E-4 0.0 0.0 0.16480980947986024 0.0 3 2.6369569516777636E-4 0.0 0.0 0.21728525281824773 0.0 4 2.6369569516777636E-4 0.0 0.0 0.32540048783703607 0.0 5 2.6369569516777636E-4 0.0 0.0 0.5632540048783704 0.0 6 2.6369569516777636E-4 0.0 0.0 0.8208846990572879 0.0 7 2.6369569516777636E-4 0.0 0.0 1.0263036455929857 0.0 8 2.6369569516777636E-4 0.0 0.0 1.5993143911925638 0.0 9 5.273913903355527E-4 0.0 0.0 1.8825235678027556 0.0 10 5.273913903355527E-4 0.0 0.0 2.3426725558705255 0.0 11 5.273913903355527E-4 0.0 0.0 2.628782385127563 0.0 12 0.0010547827806711054 0.0 0.0 2.911727866042587 0.0 13 0.0013184784758388818 0.0 0.0 3.0172061441096973 0.0 14 0.0013184784758388818 0.0 0.0 3.0549146285186892 0.0 15 0.0013184784758388818 0.0 0.0 3.103962027819896 0.0 16 0.0013184784758388818 0.0 0.0 3.2044300876788188 0.0 17 0.0013184784758388818 0.0 0.0 3.3331135869206934 0.0 18 0.0013184784758388818 0.0 0.0 3.5398510119322304 0.0 19 0.0013184784758388818 0.0 0.0 3.6221240688245766 0.0 20 0.0015821741710066583 0.0 0.0 3.7265475641110157 0.0 21 0.0015821741710066583 0.0 0.0 3.849166062364032 0.0 22 0.0015821741710066583 0.0 0.0 3.972839343397719 0.0 23 0.0015821741710066583 0.0 0.0 4.110224800580131 0.0 24 0.0015821741710066583 0.0 0.0 4.2080559034873755 0.0 25 0.0015821741710066583 0.0 0.0 4.287692003428044 0.0 26 0.0015821741710066583 0.0 0.0 4.365745929197706 0.0 27 0.0015821741710066583 0.0 0.0 4.453292899993408 0.0 28 0.0015821741710066583 0.0 0.0 4.531083130067902 0.0 29 0.0015821741710066583 0.0 0.0 4.62733205880414 0.0 30 0.0015821741710066583 0.0 0.0 4.7633990375107125 0.0 31 0.0015821741710066583 0.0 0.0 4.8622849231986285 0.0 32 0.0015821741710066583 0.0 0.0 4.955896894983189 0.0 33 0.0015821741710066583 0.0 0.0 5.057947129013119 0.0 34 0.0015821741710066583 0.0 0.0 5.154723449139693 0.0 35 0.0015821741710066583 0.0 0.0 5.292108906322104 0.0 36 0.0015821741710066583 0.0 0.0 5.391258487705188 0.0 37 0.0015821741710066583 0.0 0.0 5.49541828729646 0.0 38 0.0015821741710066583 0.0 0.0 5.616718307073637 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTGCGG 65 0.0 44.000004 2 AACGTAG 35 1.4426587E-7 44.0 1 CTAGAAT 20 7.849802E-4 44.0 41 CGGGTAG 25 4.437181E-5 44.0 6 CCGGGTA 20 7.849802E-4 44.0 17 TTGTGCG 25 4.437181E-5 44.0 1 CGACGGC 20 7.849802E-4 44.0 14 TAGACCC 25 4.437181E-5 44.0 23 GCGCGAC 35 1.4426587E-7 44.0 9 TTCACGG 30 2.523213E-6 44.0 2 ATGCTCG 20 7.849802E-4 44.0 1 TTCGTAG 25 4.437181E-5 44.0 1 TATTGCG 30 2.523213E-6 44.0 1 TACGCGG 20 7.849802E-4 44.0 2 TACCTCT 20 7.849802E-4 44.0 15 TTGCGAG 25 4.437181E-5 44.0 1 TTACGCG 20 7.849802E-4 44.0 1 ATAACGG 20 7.849802E-4 44.0 2 CAGTCGA 20 7.849802E-4 44.0 17 AATAGCG 35 1.4426587E-7 44.0 1 >>END_MODULE