##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546012_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 380878 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.0496852010355 31.0 28.0 33.0 25.0 33.0 2 28.773413008889985 31.0 28.0 33.0 16.0 33.0 3 28.246380730837696 31.0 27.0 33.0 16.0 34.0 4 32.291208733505215 35.0 32.0 35.0 26.0 37.0 5 33.74415167061369 35.0 33.0 35.0 30.0 37.0 6 33.58966388187294 35.0 33.0 37.0 28.0 37.0 7 34.53272176392441 35.0 35.0 37.0 32.0 37.0 8 34.88086998986552 35.0 35.0 37.0 32.0 37.0 9 36.68030445444473 39.0 37.0 39.0 32.0 39.0 10 36.256226403205225 38.0 35.0 39.0 31.0 39.0 11 36.39360372612752 38.0 35.0 39.0 32.0 39.0 12 35.035168741696815 37.0 34.0 39.0 29.0 39.0 13 35.390579135576225 37.0 35.0 39.0 30.0 39.0 14 36.08554182704173 38.0 35.0 40.0 30.0 41.0 15 36.66283691890842 38.0 35.0 40.0 31.0 41.0 16 36.178954940952224 38.0 34.0 40.0 31.0 41.0 17 35.82071686996886 37.0 34.0 40.0 30.0 41.0 18 35.51005308786541 37.0 34.0 39.0 29.0 40.0 19 34.92936320816639 37.0 33.0 39.0 27.0 41.0 20 35.33785621642626 36.0 34.0 39.0 29.0 41.0 21 35.52067066094655 36.0 34.0 39.0 30.0 40.0 22 35.93817180304455 37.0 34.0 40.0 31.0 41.0 23 36.3189604020185 37.0 35.0 40.0 32.0 41.0 24 35.87249985559681 36.0 35.0 40.0 31.0 41.0 25 35.56876480132746 36.0 34.0 40.0 30.0 41.0 26 35.728907944276116 36.0 34.0 40.0 31.0 41.0 27 36.05677408514013 37.0 35.0 40.0 31.0 41.0 28 35.990080813278794 37.0 35.0 40.0 31.0 41.0 29 36.151636482023115 37.0 35.0 40.0 31.0 41.0 30 35.832613067701466 37.0 35.0 40.0 31.0 41.0 31 35.1511743918 36.0 34.0 40.0 29.0 41.0 32 35.166181822000745 37.0 34.0 40.0 29.0 41.0 33 34.90608803868955 37.0 34.0 40.0 27.0 41.0 34 34.564343438056284 37.0 34.0 40.0 24.0 41.0 35 34.361672241505154 37.0 34.0 40.0 23.0 41.0 36 33.914571070001415 36.0 33.0 40.0 21.0 41.0 37 33.82497545145689 36.0 33.0 40.0 20.0 41.0 38 33.706507070505516 36.0 33.0 40.0 19.0 41.0 39 33.50529565897742 36.0 33.0 40.0 18.0 41.0 40 33.34514726500349 36.0 33.0 40.0 18.0 40.0 41 33.06613928869612 35.0 33.0 39.0 18.0 40.0 42 33.21735568869822 36.0 33.0 40.0 18.0 40.0 43 33.011552255577904 35.0 33.0 39.0 17.0 40.0 44 32.841534559622765 35.0 32.0 39.0 16.0 40.0 45 32.78313265665121 35.0 32.0 39.0 17.0 40.0 46 32.5923497812948 35.0 32.0 39.0 17.0 40.0 47 32.562337546405935 35.0 32.0 39.0 17.0 40.0 48 32.59392771438623 35.0 32.0 39.0 17.0 40.0 49 32.65284421783353 35.0 32.0 39.0 18.0 40.0 50 32.80882854877415 35.0 32.0 39.0 17.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 7.0 13 7.0 14 17.0 15 47.0 16 89.0 17 166.0 18 340.0 19 632.0 20 1003.0 21 1470.0 22 2124.0 23 2929.0 24 4255.0 25 6575.0 26 9610.0 27 11039.0 28 10720.0 29 10527.0 30 11537.0 31 14028.0 32 19122.0 33 28952.0 34 46594.0 35 36547.0 36 38464.0 37 54153.0 38 58631.0 39 11292.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.243106716586414 22.823843855512788 28.123966204401405 21.809083223499385 2 36.34418370186779 20.236401157325968 30.383744926196837 13.035670214609402 3 27.553442309610954 18.982981427123647 39.69039955051224 13.773176712753166 4 25.155299072143837 25.44463056411764 35.623743035827744 13.776327327910776 5 20.178902430699594 30.003833248441758 36.16879945809419 13.648464862764456 6 18.76322601988038 36.56446421163732 34.32884020605023 10.343469562432064 7 77.81284295758746 4.57863147779604 15.095909976422897 2.512615588193595 8 78.9733195406403 3.2984315187540365 14.812092060974905 2.916156879630748 9 75.43727912874989 4.609349975582733 16.262687789790956 3.6906831058764222 10 44.232536402732634 22.0330394509528 21.548107267944065 12.186316878370501 11 37.999044313402194 20.635479077289844 27.99426588041315 13.371210728894816 12 34.151880654697834 20.002205430610324 31.344157446741477 14.501756467950367 13 20.692452701389946 32.99192917417126 31.534769663776853 14.780848460661943 14 15.68586266468528 33.33377091877189 34.60530668613047 16.375059730412364 15 14.724925041614375 21.32651400185886 48.18524566921691 15.763315287309847 16 16.548606115344022 17.473836766628683 46.221362220973646 19.75619489705365 17 17.161138212235937 18.6925997300973 34.82112382442672 29.32513823324004 18 21.14955445050646 20.787233707381368 38.6291673449241 19.434044497188076 19 25.161600302459053 22.556304118379114 32.127347864670575 20.154747714491254 20 26.80779672231003 21.457264530899657 31.974543029526515 19.760395717263794 21 21.489033233738887 25.52208318674221 33.680076034845804 19.308807544673098 22 21.626084993094903 21.947185187907937 32.0152384753123 24.411491343684855 23 18.984294183439314 25.865237687658514 32.051995652151085 23.098472476751088 24 18.223945725402885 21.051097726831163 42.42592116110671 18.299035386659245 25 17.688866251135536 22.488040789964238 39.029820572466775 20.79327238643345 26 17.228876438124544 28.15442215092497 33.854672624829995 20.76202878612049 27 17.234652565913493 28.66324649887891 34.62368527454986 19.478415660657745 28 16.105419583173614 25.047127951732577 40.76738483188843 18.08006763320538 29 16.90567583320643 22.027788425690115 39.96082735154039 21.105708389563063 30 19.238443806153153 25.695629571673866 36.53374571385063 18.53218090832235 31 26.169272050367837 23.817862937738592 31.183476073703392 18.82938893819018 32 26.84481645041194 23.168836215271032 32.20296262845321 17.78338470586382 33 25.47876222832508 24.043657024033944 30.81301624142114 19.66456450621984 34 19.600501998015112 24.93685642121624 32.67975572230478 22.782885858463864 35 20.22826206816881 24.27942805832839 33.85047180461985 21.641838068882947 36 26.080529723428498 24.020815064141274 30.215712117791 19.682943094639228 37 20.43882818120238 29.091992711576935 30.797000614369956 19.67217849285073 38 20.4128356061521 29.265801647771728 28.5847436712018 21.73661907487437 39 20.01822105766151 28.685563356245307 29.00561334600581 22.290602240087377 40 22.810978843619218 24.77144912544174 29.008501409900283 23.409070621038758 41 18.519840998955043 23.470245065349012 30.281349933574532 27.728564002121413 42 21.40134111185209 23.9625286837255 28.072243605563983 26.563886598858428 43 21.28319304344173 24.658289531030935 29.35690693607927 24.701610489448065 44 20.139782292492608 27.20713719353704 29.908527139924068 22.744553374046284 45 18.207404995825435 31.440776311574837 27.979563009677637 22.37225568292209 46 21.33281523217408 28.50387788215649 29.257925109877704 20.905381775791724 47 20.464033102463254 25.99099974269976 30.12854509843047 23.416422056406514 48 20.92822373568439 23.60335855575801 32.612280047679306 22.856137660878286 49 20.83265507590357 23.271231207893344 33.44903092328777 22.447082792915314 50 19.444021445187172 28.30171340954321 31.13490409002358 21.119361055246035 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 149.0 1 317.5 2 486.0 3 5208.5 4 9931.0 5 6971.0 6 4011.0 7 4080.0 8 4149.0 9 4350.5 10 4552.0 11 4510.5 12 4469.0 13 4190.5 14 3912.0 15 3645.5 16 3379.0 17 3155.0 18 2931.0 19 2670.0 20 2409.0 21 2356.0 22 2303.0 23 2296.5 24 2290.0 25 2342.0 26 2394.0 27 2911.5 28 3429.0 29 3419.5 30 3410.0 31 4462.0 32 5514.0 33 6586.0 34 7658.0 35 8292.5 36 8927.0 37 10043.0 38 11159.0 39 13748.5 40 16338.0 41 21866.0 42 27394.0 43 30626.0 44 33858.0 45 34251.0 46 34644.0 47 32315.0 48 29986.0 49 28575.5 50 27165.0 51 26036.0 52 24907.0 53 22602.0 54 20297.0 55 18546.5 56 16796.0 57 15918.0 58 15040.0 59 13817.5 60 12595.0 61 11401.0 62 10207.0 63 9138.5 64 8070.0 65 6788.0 66 5506.0 67 4648.0 68 3790.0 69 3166.5 70 2543.0 71 2174.0 72 1805.0 73 1412.5 74 1020.0 75 872.0 76 724.0 77 553.0 78 382.0 79 284.0 80 186.0 81 143.5 82 101.0 83 64.0 84 27.0 85 21.5 86 16.0 87 11.5 88 7.0 89 6.5 90 6.0 91 3.0 92 0.0 93 1.5 94 3.0 95 2.0 96 1.0 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 380878.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.6542787196363 #Duplication Level Percentage of deduplicated Percentage of total 1 73.1593714390987 26.08444620243025 2 8.88365160202449 6.334803805334493 3 4.084047730510889 4.3684132826379996 4 2.4939492119588467 3.5567984126319208 5 1.7274424244836213 3.079535683733166 6 1.228623852150578 2.6283418359701956 7 0.9446733673008948 2.357715327573442 8 0.7266957311745887 2.0727849714934945 9 0.673494584431688 2.1611667266543724 >10 5.899544732643376 41.49725452062448 >50 0.16670331931504845 3.6469514259152893 >100 0.011064379600556314 0.5065283367933113 >500 0.0 0.0 >1k 0.0 0.0 >5k 7.376253067037542E-4 1.7052594682075963 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6484 1.7023823901616792 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.6255126313412693E-4 0.0 0.0 0.0438460609433992 0.0 2 2.6255126313412693E-4 0.0 0.0 0.15779330914361028 0.0 3 2.6255126313412693E-4 0.0 0.0 0.21187886934924044 0.0 4 2.6255126313412693E-4 0.0 0.0 0.31007304176140393 0.0 5 2.6255126313412693E-4 0.0 0.0 0.5650103182646412 0.0 6 2.6255126313412693E-4 0.0 0.0 0.8223105561360856 0.0 7 2.6255126313412693E-4 0.0 0.0 1.0171235933816078 0.0 8 2.6255126313412693E-4 0.0 0.0 1.5879100394351997 0.0 9 2.6255126313412693E-4 0.0 0.0 1.8869559281449704 0.0 10 2.6255126313412693E-4 0.0 0.0 2.3401194083144734 0.0 11 2.6255126313412693E-4 0.0 0.0 2.595844338607113 0.0 12 2.6255126313412693E-4 0.0 0.0 2.867059793424666 0.0 13 5.251025262682539E-4 0.0 0.0 2.9723428499414513 0.0 14 5.251025262682539E-4 0.0 0.0 3.0117255394115703 0.0 15 5.251025262682539E-4 0.0 0.0 3.06449834330153 0.0 16 5.251025262682539E-4 0.0 0.0 3.1794957965542774 0.0 17 5.251025262682539E-4 0.0 0.0 3.311559081910743 0.0 18 5.251025262682539E-4 0.0 0.0 3.518449477260435 0.0 19 5.251025262682539E-4 0.0 0.0 3.596952304937539 0.0 20 5.251025262682539E-4 0.0 0.0 3.6888452470344837 0.0 21 5.251025262682539E-4 0.0 0.0 3.799379328813951 0.0 22 5.251025262682539E-4 0.0 0.0 3.917527397224308 0.0 23 5.251025262682539E-4 0.0 0.0 4.0530038490015174 0.0 24 5.251025262682539E-4 0.0 0.0 4.1506729188874125 0.0 25 5.251025262682539E-4 0.0 0.0 4.2325889129852605 0.0 26 5.251025262682539E-4 0.0 0.0 4.3066283691890845 0.0 27 5.251025262682539E-4 0.0 0.0 4.390644773392005 0.0 28 5.251025262682539E-4 0.0 0.0 4.465734434648365 0.0 29 5.251025262682539E-4 0.0 0.0 4.565503914639334 0.0 30 5.251025262682539E-4 0.0 0.0 4.700717815153409 0.0 31 5.251025262682539E-4 0.0 0.0 4.79812433377617 0.0 32 5.251025262682539E-4 0.0 0.0 4.895268301135797 0.0 33 5.251025262682539E-4 0.0 0.0 4.988211448285278 0.0 34 5.251025262682539E-4 0.0 0.0 5.087455825749978 0.0 35 5.251025262682539E-4 0.0 0.0 5.214793188370029 0.0 36 5.251025262682539E-4 0.0 0.0 5.306686130466973 0.0 37 5.251025262682539E-4 0.0 0.0 5.405930507931673 0.0 38 5.251025262682539E-4 0.0 0.0 5.52407857634203 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGGTAT 35 1.4426769E-7 44.0 6 CCTTACG 20 7.849846E-4 44.0 42 ACACGCG 30 2.523244E-6 44.0 36 ATCGTAA 20 7.849846E-4 44.0 14 GCGATCA 35 1.4426769E-7 44.0 9 GCGATAT 35 1.4426769E-7 44.0 9 CCGGTAC 25 4.4372166E-5 44.0 20 TTGCACG 20 7.849846E-4 44.0 1 GGCGATA 100 0.0 44.0 8 CGTTTTT 4165 0.0 42.996395 1 TCATGCA 110 0.0 42.0 24 GCCAGTA 100 0.0 41.800003 25 CACGGGA 90 0.0 41.555557 4 TCGTTGA 75 0.0 41.066666 24 TGGGCGA 200 0.0 40.7 6 ATAGGGC 130 0.0 40.615387 4 TAGGGCG 120 0.0 40.333332 5 ACTCATG 115 0.0 40.173916 22 ACGGGAA 55 7.6397555E-11 40.0 5 CATAGTT 110 0.0 40.0 36 >>END_MODULE