##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546009_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 760353 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.152986836377313 31.0 28.0 33.0 25.0 33.0 2 28.815689554719977 31.0 28.0 33.0 16.0 33.0 3 28.19114411332631 31.0 27.0 33.0 16.0 34.0 4 32.19904570640216 35.0 32.0 35.0 25.0 37.0 5 33.682665814430926 35.0 33.0 35.0 28.0 37.0 6 33.4770915614195 35.0 33.0 37.0 28.0 37.0 7 34.456987741220196 35.0 35.0 37.0 32.0 37.0 8 34.915991651246195 35.0 35.0 37.0 32.0 37.0 9 36.72023257618501 39.0 37.0 39.0 32.0 39.0 10 36.381816077532406 39.0 35.0 39.0 32.0 39.0 11 36.410743431011646 39.0 35.0 39.0 32.0 39.0 12 35.116044784461955 37.0 34.0 39.0 29.0 39.0 13 35.06996224122217 37.0 34.0 39.0 27.0 39.0 14 35.83508317847105 38.0 34.0 40.0 27.0 41.0 15 36.50391857466203 38.0 35.0 40.0 31.0 41.0 16 36.156500993617435 37.0 34.0 40.0 31.0 41.0 17 35.71571888320293 37.0 34.0 40.0 30.0 41.0 18 35.40372958349609 37.0 34.0 39.0 29.0 40.0 19 34.83740446871387 36.0 33.0 39.0 27.0 40.0 20 35.29115687055881 35.0 34.0 39.0 30.0 40.0 21 35.46570079949708 36.0 34.0 39.0 30.0 40.0 22 35.799758796243324 36.0 34.0 40.0 31.0 41.0 23 36.138579054728524 36.0 35.0 40.0 32.0 41.0 24 35.83364305789548 36.0 35.0 40.0 31.0 41.0 25 35.47445199795358 35.0 34.0 40.0 30.0 41.0 26 35.59103469046614 35.0 34.0 40.0 31.0 41.0 27 35.86569264538971 36.0 35.0 40.0 31.0 41.0 28 35.83307095520107 36.0 35.0 40.0 31.0 41.0 29 35.99159469351736 36.0 35.0 40.0 31.0 41.0 30 35.640348627545364 36.0 35.0 40.0 31.0 41.0 31 34.9761018895171 35.0 34.0 40.0 29.0 41.0 32 34.88476010484604 35.0 34.0 40.0 29.0 41.0 33 34.575873311475064 36.0 34.0 40.0 25.0 41.0 34 34.21699920957766 36.0 34.0 40.0 23.0 41.0 35 33.940094929591915 36.0 34.0 40.0 21.0 41.0 36 33.50978558643156 35.0 33.0 40.0 18.0 41.0 37 33.39011222419061 35.0 33.0 40.0 18.0 41.0 38 33.239480872699914 35.0 33.0 40.0 18.0 41.0 39 33.062574882981984 35.0 33.0 40.0 17.0 40.0 40 32.91101896092999 35.0 33.0 39.0 16.0 40.0 41 32.653791068096005 35.0 32.0 39.0 15.0 40.0 42 32.78789588520069 35.0 33.0 39.0 15.0 40.0 43 32.561710153047336 35.0 32.0 39.0 15.0 40.0 44 32.28155738190025 35.0 32.0 39.0 12.0 40.0 45 32.248805489029436 35.0 32.0 39.0 12.0 40.0 46 32.11616315053666 35.0 31.0 39.0 12.0 40.0 47 32.11113785307614 35.0 31.0 38.0 12.0 40.0 48 32.18524816762741 35.0 32.0 38.0 12.0 40.0 49 32.16042943211903 35.0 32.0 38.0 12.0 40.0 50 32.31161315862501 35.0 32.0 39.0 12.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 3.0 12 9.0 13 7.0 14 23.0 15 66.0 16 175.0 17 409.0 18 779.0 19 1386.0 20 2187.0 21 3104.0 22 4627.0 23 6484.0 24 9558.0 25 14572.0 26 20738.0 27 24134.0 28 22842.0 29 22019.0 30 23848.0 31 29030.0 32 39334.0 33 61999.0 34 101608.0 35 69581.0 36 69040.0 37 98510.0 38 109963.0 39 24316.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.462051178860346 22.713134557238547 28.42640194751648 22.39841231638463 2 37.3359479084057 20.505870299716054 29.4284365288228 12.72974526305545 3 27.486969867942918 19.287094283839217 40.08822218101329 13.137713667204576 4 24.14891504340747 25.202504626140755 36.63587833545734 14.012701994994432 5 20.366592885146765 29.37359358087625 37.38434648117387 12.875467052803105 6 18.230611308168708 36.89233816398436 34.71229810364396 10.16475242420297 7 77.82740385057993 4.7364842382419745 15.446509713251608 1.9896021979264895 8 79.83975863842188 2.8072487384149207 15.017366933516406 2.3356256896467826 9 76.51788051076277 4.23987279592505 16.22522696694825 3.0170197263639387 10 46.18894118915819 23.002605368822113 21.020762724681823 9.787690717337869 11 41.24755212381617 19.32010526689577 28.30211756907647 11.130225040211586 12 36.9425779868035 20.008601268095212 30.446121735562297 12.60269900953899 13 19.4979174146745 35.94935510216965 31.156712737373297 13.39601474578255 14 14.584015582236146 37.014781292373414 34.13467165908467 14.266531466305782 15 13.604470555123738 21.2440800522915 51.19240668478982 13.959042707794932 16 15.634185700589068 17.390080659904015 49.36075743766382 17.614976201843092 17 15.814102134140326 17.858810315734928 35.10159097156189 31.22549657856285 18 20.29044404375336 21.08191852994596 39.98537521388092 18.64226221241976 19 26.00252777328425 22.480742497234836 32.424807951043796 19.091921778437122 20 27.487495939386047 22.23138463319011 32.094040531174336 18.187078896249506 21 20.887798167430127 25.48382133035577 34.72110980031643 18.907270701897673 22 20.655274589565636 22.14721320228894 33.05898707573982 24.138525132405604 23 17.90457853128744 27.38478049011446 32.071550976980426 22.63909000161767 24 17.78029415284743 22.27320731291913 43.865415142703455 16.081083391529987 25 16.229435538493306 22.550446963449872 41.21454114075962 20.0055763572972 26 15.624979450334253 30.70297611767166 34.45307640004051 19.21896803195358 27 16.627803138805266 29.793135556774285 35.62766241469423 17.95139888972622 28 14.641488887398351 25.605606869440905 43.528203347655634 16.224700895505116 29 15.385879979430605 22.241511508470406 41.98957589435433 20.383032617744654 30 17.64009611325266 27.239584771809938 37.34923121234479 17.771087902592612 31 26.545696538318385 23.934409412470263 31.33465640301281 18.185237646198544 32 27.178428966545802 23.12859947945231 32.37917125335206 17.313800300649827 33 25.155026678398063 25.44173561490518 30.720073439573458 18.6831642671233 34 18.235345951156898 25.821953750429078 32.8780184993023 23.064681799111728 35 19.38783696519906 24.694977201378833 34.27447514509708 21.642710688325028 36 27.646369515212015 24.07355530917876 29.740396894600273 18.539678281008953 37 19.965068856176014 30.14073726282398 31.08095844956224 18.813235431437768 38 20.61910717785029 30.77873040548272 28.00883273953019 20.593329677136804 39 20.09408787760422 29.39923956372895 29.946222346725797 20.560450211941035 40 23.25143716142371 25.319687040098483 29.03020044637162 22.398675352106192 41 18.380673187322206 23.322982877689704 30.988501393431733 27.307842541556354 42 21.924948017565526 23.835376463300598 27.84759184221013 26.392083676923743 43 21.036150314393446 25.40070204234086 28.7605888317663 24.802558811499395 44 19.453201342008253 28.55016025451336 30.199394228733233 21.79724417474515 45 17.282236014061887 34.0939011222419 26.758360919204634 21.865501944491573 46 21.278406213955886 29.941750739459174 28.806883118761945 19.972959927823 47 20.697491822877005 26.02738464897225 29.880594934195038 23.3945285939557 48 22.062121146362283 22.970646528651823 33.20352520474043 21.763707120245463 49 21.02825924274646 22.972356260842 33.53376655316676 22.46561794324478 50 19.548551791075987 29.408577331844548 30.018162616574145 21.024708260505317 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 311.0 1 530.5 2 750.0 3 9040.0 4 17330.0 5 12878.0 6 8426.0 7 8705.5 8 8985.0 9 9653.5 10 10322.0 11 10239.0 12 10156.0 13 9676.5 14 9197.0 15 8502.5 16 7808.0 17 7454.5 18 7101.0 19 6447.5 20 5794.0 21 5632.5 22 5471.0 23 5047.5 24 4624.0 25 4628.0 26 4632.0 27 5733.0 28 6834.0 29 6968.5 30 7103.0 31 9016.5 32 10930.0 33 13637.0 34 16344.0 35 17909.5 36 19475.0 37 20568.0 38 21661.0 39 28627.5 40 35594.0 41 45874.5 42 56155.0 43 65627.5 44 75100.0 45 76297.0 46 77494.0 47 71117.5 48 64741.0 49 59678.0 50 54615.0 51 50536.5 52 46458.0 53 41870.0 54 37282.0 55 34174.5 56 31067.0 57 28045.5 58 25024.0 59 22308.0 60 19592.0 61 18371.0 62 17150.0 63 14828.5 64 12507.0 65 10433.5 66 8360.0 67 6777.0 68 5194.0 69 4517.5 70 3841.0 71 3329.5 72 2818.0 73 2371.0 74 1924.0 75 1468.0 76 1012.0 77 786.5 78 561.0 79 454.5 80 348.0 81 248.5 82 149.0 83 99.5 84 50.0 85 39.0 86 28.0 87 20.0 88 12.0 89 9.5 90 7.0 91 7.0 92 7.0 93 6.0 94 5.0 95 3.0 96 1.0 97 2.0 98 3.0 99 1.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 760353.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.492326261567143 #Duplication Level Percentage of deduplicated Percentage of total 1 76.02060358406264 22.420244435024358 2 7.3771981121882515 4.351414672417462 3 3.3780706463003676 2.988814849059403 4 2.103693586498495 2.4817127042951976 5 1.4445573261421571 2.130167798306078 6 1.0513613164388906 1.86042545779239 7 0.8654310293736112 1.786650199261931 8 0.6671149818130795 1.5739818158088619 9 0.5335578747719804 1.4162276629983266 >10 5.599120551029024 36.59285625608163 >50 0.8650150718818913 17.229751485756488 >100 0.09338230888823867 3.6307491426955614 >500 4.468053056853525E-4 0.12004545671961879 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 4.468053056853525E-4 1.4169580637827233 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10753 1.4142115570004985 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 911 0.1198127711733892 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.024988393548785893 0.0 2 0.0 0.0 0.0 0.09771777056183115 0.0 3 0.0 0.0 0.0 0.14361750397512735 0.0 4 0.0 0.0 0.0 0.24002009592912765 0.0 5 0.0 0.0 0.0 0.41138786852948567 0.0 6 0.0 0.0 0.0 0.6373355533548234 0.0 7 0.0 0.0 0.0 0.8058099330179535 0.0 8 0.0 0.0 0.0 1.3163622685778842 0.0 9 0.0 0.0 0.0 1.5811077223342316 0.0 10 0.0 0.0 0.0 1.9634301436306558 0.0 11 0.0 0.0 0.0 2.1929288106971367 0.0 12 0.0 0.0 0.0 2.40717140591278 0.0 13 1.3151786078308364E-4 0.0 0.0 2.490422211788472 0.0 14 2.630357215661673E-4 0.0 0.0 2.5214604269332797 0.0 15 2.630357215661673E-4 0.0 0.0 2.5576278386486275 0.0 16 2.630357215661673E-4 0.0 0.0 2.6485066804497386 0.0 17 2.630357215661673E-4 0.0 0.0 2.75477311196247 0.0 18 2.630357215661673E-4 0.0 0.0 2.93048097396867 0.0 19 2.630357215661673E-4 0.0 0.0 3.0037364224248475 0.0 20 2.630357215661673E-4 0.0 0.0 3.09553588925144 0.0 21 2.630357215661673E-4 0.0 0.0 3.196410088472065 0.0 22 2.630357215661673E-4 0.0 0.0 3.295837591224076 0.0 23 2.630357215661673E-4 0.0 0.0 3.4085483979151787 0.0 24 2.630357215661673E-4 0.0 0.0 3.4882482215497275 0.0 25 2.630357215661673E-4 0.0 0.0 3.5567690270177144 0.0 26 2.630357215661673E-4 0.0 0.0 3.6246322431817855 0.0 27 2.630357215661673E-4 0.0 0.0 3.697887691637963 0.0 28 2.630357215661673E-4 0.0 0.0 3.772063765119622 0.0 29 2.630357215661673E-4 0.0 0.0 3.851763588754171 0.0 30 2.630357215661673E-4 0.0 0.0 3.980914128043159 0.0 31 2.630357215661673E-4 0.0 0.0 4.080210112934387 0.0 32 2.630357215661673E-4 0.0 0.0 4.172930204786461 0.0 33 2.630357215661673E-4 0.0 0.0 4.259863510764079 0.0 34 2.630357215661673E-4 0.0 0.0 4.356529138439646 0.0 35 2.630357215661673E-4 0.0 0.0 4.483969945538454 0.0 36 2.630357215661673E-4 0.0 0.0 4.581819233961068 0.0 37 3.945535823492509E-4 0.0 0.0 4.677958790193502 0.0 38 3.945535823492509E-4 0.0 0.0 4.785671918174848 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTAGACG 20 7.854799E-4 44.0 1 ACGCCTA 20 7.854799E-4 44.0 17 GCGACTA 25 4.4414148E-5 44.0 27 CGTTGAT 55 1.8189894E-12 44.0 25 CCGTGTA 25 4.4414148E-5 44.0 32 ATTAACG 20 7.854799E-4 44.0 10 ACGATCT 20 7.854799E-4 44.0 36 CTAACGG 25 4.4414148E-5 44.0 2 AAGCACG 35 1.4452235E-7 44.0 1 TACTCCG 20 7.854799E-4 44.0 35 TTGCACG 25 4.4414148E-5 44.0 1 CGACTAT 25 4.4414148E-5 44.0 28 TGTACCG 30 2.5265817E-6 44.0 1 ACGAGCC 20 7.854799E-4 44.0 23 ATACCTC 30 2.5265817E-6 44.0 35 TACGTAG 30 2.5265817E-6 44.0 1 CGTTTTT 8760 0.0 43.296806 1 TTACCGG 80 0.0 41.25 2 ACGGGTA 75 0.0 41.066666 5 TATAGCG 75 0.0 41.066666 1 >>END_MODULE