##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546008_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 759085 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.128706271366184 31.0 28.0 33.0 25.0 33.0 2 28.77861372573559 31.0 28.0 33.0 16.0 33.0 3 28.188065895123735 31.0 27.0 33.0 16.0 34.0 4 32.18377915516707 35.0 32.0 35.0 25.0 37.0 5 33.71497131414795 35.0 33.0 35.0 30.0 37.0 6 33.562658990758614 35.0 33.0 37.0 28.0 37.0 7 34.51484616347313 35.0 35.0 37.0 32.0 37.0 8 34.95264693677256 35.0 35.0 37.0 32.0 37.0 9 36.84100463057497 39.0 37.0 39.0 32.0 39.0 10 36.377634915720904 39.0 35.0 39.0 32.0 39.0 11 36.45375419090089 39.0 35.0 39.0 32.0 39.0 12 35.06867873821772 37.0 34.0 39.0 29.0 39.0 13 35.07757365775901 37.0 34.0 39.0 27.0 39.0 14 35.85571708043236 38.0 34.0 40.0 27.0 41.0 15 36.541905056745954 38.0 35.0 40.0 31.0 41.0 16 36.183295678349594 37.0 34.0 40.0 31.0 41.0 17 35.76101227135301 37.0 34.0 40.0 30.0 41.0 18 35.4643024167254 37.0 34.0 39.0 29.0 40.0 19 34.90547303661645 37.0 33.0 39.0 27.0 40.0 20 35.26184419399672 35.0 34.0 39.0 30.0 40.0 21 35.382467049144694 35.0 34.0 39.0 30.0 40.0 22 35.7769511978237 36.0 34.0 39.0 31.0 41.0 23 36.152971011151585 36.0 35.0 40.0 32.0 41.0 24 35.7414070887977 35.0 34.0 40.0 31.0 41.0 25 35.39331695396431 35.0 34.0 40.0 30.0 41.0 26 35.55143626866556 35.0 34.0 40.0 31.0 41.0 27 35.877098085194675 36.0 35.0 40.0 31.0 41.0 28 35.840356481816926 36.0 35.0 40.0 31.0 41.0 29 36.00426961407484 36.0 35.0 40.0 31.0 41.0 30 35.689830519638775 36.0 35.0 40.0 31.0 41.0 31 35.01634599550775 35.0 34.0 40.0 29.0 41.0 32 34.963135880698474 36.0 34.0 40.0 29.0 41.0 33 34.65409670853725 36.0 34.0 40.0 26.0 41.0 34 34.23102155885046 36.0 34.0 40.0 23.0 41.0 35 33.97824617796426 36.0 34.0 40.0 21.0 41.0 36 33.54289572314036 35.0 33.0 40.0 18.0 41.0 37 33.420983157353916 35.0 33.0 40.0 18.0 41.0 38 33.30943965432066 35.0 33.0 40.0 18.0 41.0 39 33.093000125150674 35.0 33.0 40.0 18.0 40.0 40 32.912924112582914 35.0 33.0 39.0 16.0 40.0 41 32.657145115500896 35.0 32.0 39.0 15.0 40.0 42 32.795246909107675 35.0 33.0 39.0 15.0 40.0 43 32.5806701489293 35.0 32.0 39.0 15.0 40.0 44 32.30074365848357 35.0 32.0 39.0 12.0 40.0 45 32.25041727869738 35.0 32.0 39.0 12.0 40.0 46 32.10567196032065 35.0 31.0 39.0 12.0 40.0 47 32.10576549398289 35.0 31.0 38.0 12.0 40.0 48 32.177421500885934 35.0 32.0 38.0 12.0 40.0 49 32.2083086874329 35.0 32.0 38.0 12.0 40.0 50 32.3766824532167 35.0 32.0 39.0 12.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 0.0 12 10.0 13 5.0 14 27.0 15 71.0 16 176.0 17 389.0 18 743.0 19 1288.0 20 2074.0 21 3123.0 22 4465.0 23 6371.0 24 9274.0 25 14272.0 26 20673.0 27 24101.0 28 22649.0 29 21950.0 30 23501.0 31 28834.0 32 38901.0 33 62342.0 34 102245.0 35 69643.0 36 69811.0 37 99737.0 38 110595.0 39 21813.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.570146953239753 22.612619140148997 28.388915602337022 22.428318304274224 2 37.551262375096336 20.449620266505068 29.270503303319128 12.72861405507947 3 27.493758933452778 19.15319101286417 40.06652746398625 13.286522589696807 4 24.11205596211228 25.25119057813025 36.56033250558238 14.076420954175092 5 20.353583590770466 29.37299511912368 37.38184788264819 12.891573407457663 6 18.282405791182807 36.79258581054823 34.840762233478465 10.084246164790505 7 77.71593431565636 4.762312520995672 15.529222682571781 1.9925304807761977 8 79.78790254055869 2.8147045456042474 15.087901881870936 2.3094910319661173 9 76.60696759914897 4.207960900294434 16.27340811635061 2.9116633842059847 10 46.26253976827365 22.633960623645574 21.07076282629745 10.032736781783331 11 41.270081743151295 19.18375412503211 28.40656843436506 11.139595697451538 12 36.950934348590735 19.688572426012897 30.486177437309394 12.874315788086973 13 19.569876891257238 35.91020768425143 31.107846947311568 13.412068477179762 14 14.648557144456815 36.939209706422865 34.16046951263693 14.251763636483398 15 13.583063820257282 21.26560266636806 51.19716500787131 13.954168505503336 16 15.609714327117516 17.261439759710704 49.47245697122193 17.656388941949846 17 15.83037472746794 17.83199509936305 35.21832205879447 31.119308114374544 18 20.248325286364505 21.04625964154212 39.95547270727257 18.749942364820804 19 26.013555794146903 22.38813835077758 32.55103183437955 19.04727402069597 20 27.38757846617968 22.00675813644058 32.19033441577689 18.41532898160285 21 20.929144957415836 25.437204002186842 34.86737321907296 18.766277821324355 22 20.70334679251994 22.11649551762978 33.10867689389199 24.07148079595829 23 18.01300249642662 27.295493917018515 32.16174736689567 22.529756219659195 24 17.895756074747887 22.26693980252541 43.78455640672652 16.052747716000184 25 16.248246243833037 22.464677868749877 41.259806214060355 20.027269673356738 26 15.60813347648814 30.656909305282014 34.576233228162856 19.15872399006699 27 16.620141354393777 29.72776434786618 35.78321268369155 17.868881614048494 28 14.72496492487666 25.51980344757175 43.531752043578784 16.223479583972807 29 15.343736208724978 22.2907842995185 42.11662725518222 20.248852236574297 30 17.65480809132047 27.202355467437773 37.36379983796281 17.779036603278946 31 26.505463814987777 23.920641298405318 31.381729318850986 18.192165567755918 32 27.150187396668358 23.093856419241586 32.53930719221167 17.21664899187838 33 25.11510568645145 25.327861833654993 30.91854008444377 18.638492395449784 34 18.230632933070737 25.685134075894005 33.06941910326248 23.014813887772778 35 19.369240598878914 24.663245881554765 34.30432691991015 21.663186599656164 36 27.672526792124728 24.025372652601487 29.751213632201928 18.550886923071857 37 19.922406581608122 30.211636378007732 30.973079431157245 18.8928776092269 38 20.678316657554817 30.838707127660275 27.911498712265427 20.571477502519482 39 20.15176166042011 29.346384133529185 29.79863915108321 20.703215054967494 40 23.25615708385754 25.199812932675524 29.04602251394771 22.498007469519223 41 18.384502394330017 23.256420558962436 31.125894991996944 27.233182054710603 42 21.92402695350323 23.87255709176179 27.87856432415342 26.324851630581552 43 21.10461937727659 25.472246191138016 28.76384067660407 24.659293754981327 44 19.46646291258555 28.607599939400725 30.184498442203445 21.741438705810285 45 17.35523689705369 34.09143903515417 26.71703432421929 21.836289743572852 46 21.32923190420045 30.00889228479024 28.75277472219844 19.90910108881087 47 20.79016183958318 26.01540011988117 29.91535862255215 23.279079417983493 48 22.046147664622538 23.010993498751787 33.192198502144024 21.750660334481644 49 21.086966545248558 23.014286937562986 33.441050738718324 22.457695778470132 50 19.38465389251533 29.525678942410927 30.038138021433703 21.051529143640042 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 259.0 1 522.0 2 785.0 3 9332.0 4 17879.0 5 13122.0 6 8365.0 7 8770.0 8 9175.0 9 9788.0 10 10401.0 11 10287.5 12 10174.0 13 9683.0 14 9192.0 15 8441.0 16 7690.0 17 7308.5 18 6927.0 19 6360.0 20 5793.0 21 5641.0 22 5489.0 23 4986.5 24 4484.0 25 4561.5 26 4639.0 27 5709.5 28 6780.0 29 6863.0 30 6946.0 31 8941.5 32 10937.0 33 13448.0 34 15959.0 35 17499.0 36 19039.0 37 20410.5 38 21782.0 39 28656.5 40 35531.0 41 45587.5 42 55644.0 43 65482.0 44 75320.0 45 75922.0 46 76524.0 47 70318.0 48 64112.0 49 59276.5 50 54441.0 51 50699.0 52 46957.0 53 42151.0 54 37345.0 55 34345.0 56 31345.0 57 27838.5 58 24332.0 59 22242.5 60 20153.0 61 18653.0 62 17153.0 63 14858.5 64 12564.0 65 10589.0 66 8614.0 67 7017.0 68 5420.0 69 4641.5 70 3863.0 71 3362.5 72 2862.0 73 2430.5 74 1999.0 75 1530.0 76 1061.0 77 811.0 78 561.0 79 449.0 80 337.0 81 243.0 82 149.0 83 100.0 84 51.0 85 38.5 86 26.0 87 18.0 88 10.0 89 8.0 90 6.0 91 7.0 92 8.0 93 5.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 759085.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.429314083041437 #Duplication Level Percentage of deduplicated Percentage of total 1 75.66016591834129 22.266267863858932 2 7.585407708010607 4.464666917739352 3 3.4698142532836975 3.063427604090995 4 2.1000940213832284 2.472173062368183 5 1.4916021117279792 2.1948413516485283 6 1.0398185298997058 1.8360687663470912 7 0.8304595196209588 1.7107897825323841 8 0.6884656758973281 1.6208858089100706 9 0.556776013092274 1.474698254687651 >10 5.6095214826228545 36.444359742340126 >50 0.8670826008042759 17.05206444275128 >100 0.09989223526836444 3.8249984965231403 >500 4.499650237313714E-4 0.1198415661884522 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 4.499650237313714E-4 1.454916340013839 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10987 1.4474004887463194 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 905 0.11922248496545183 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.025425347622466524 0.0 2 0.0 0.0 0.0 0.09748578881152967 0.0 3 0.0 0.0 0.0 0.14254003174875013 0.0 4 0.0 0.0 0.0 0.23554674377704737 0.0 5 0.0 0.0 0.0 0.4062786117496723 0.0 6 0.0 0.0 0.0 0.6318133015406707 0.0 7 0.0 0.0 0.0 0.7942457037090708 0.0 8 0.0 0.0 0.0 1.2924771270674562 0.0 9 0.0 0.0 0.0 1.5505509923131138 0.0 10 0.0 0.0 0.0 1.9236317408458867 0.0 11 0.0 0.0 0.0 2.159178484622934 0.0 12 0.0 0.0 0.0 2.3764137086097077 0.0 13 1.3173755244801308E-4 0.0 0.0 2.4623065928058123 0.0 14 1.3173755244801308E-4 0.0 0.0 2.4941870804982313 0.0 15 1.3173755244801308E-4 0.0 0.0 2.5316005453934673 0.0 16 2.6347510489602616E-4 0.0 0.0 2.623685094554628 0.0 17 2.6347510489602616E-4 0.0 0.0 2.724727797282254 0.0 18 2.6347510489602616E-4 0.0 0.0 2.901651330219936 0.0 19 2.6347510489602616E-4 0.0 0.0 2.9662027309194623 0.0 20 2.6347510489602616E-4 0.0 0.0 3.046826113017646 0.0 21 2.6347510489602616E-4 0.0 0.0 3.1399645625983914 0.0 22 2.6347510489602616E-4 0.0 0.0 3.2327077995217928 0.0 23 2.6347510489602616E-4 0.0 0.0 3.3458703570746358 0.0 24 2.6347510489602616E-4 0.0 0.0 3.435188417634389 0.0 25 2.6347510489602616E-4 0.0 0.0 3.500135030991259 0.0 26 2.6347510489602616E-4 0.0 0.0 3.57100983420829 0.0 27 2.6347510489602616E-4 0.0 0.0 3.638459461061673 0.0 28 2.6347510489602616E-4 0.0 0.0 3.709729476936048 0.0 29 2.6347510489602616E-4 0.0 0.0 3.789035483509752 0.0 30 2.6347510489602616E-4 0.0 0.0 3.908126230922756 0.0 31 2.6347510489602616E-4 0.0 0.0 4.002055105818189 0.0 32 2.6347510489602616E-4 0.0 0.0 4.0891336279863255 0.0 33 2.6347510489602616E-4 0.0 0.0 4.17370913665795 0.0 34 2.6347510489602616E-4 0.0 0.0 4.267111061343591 0.0 35 2.6347510489602616E-4 0.0 0.0 4.392788686378996 0.0 36 2.6347510489602616E-4 0.0 0.0 4.483819335120573 0.0 37 2.6347510489602616E-4 0.0 0.0 4.5737960834425655 0.0 38 2.6347510489602616E-4 0.0 0.0 4.677737012324048 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTGTACG 25 4.4414068E-5 44.0 1 CGATTGA 25 4.4414068E-5 44.0 10 CTAAGCG 30 2.5265763E-6 44.0 1 CTACGCT 30 2.5265763E-6 44.0 24 GGACGTA 20 7.8547915E-4 44.0 8 AACGACT 20 7.8547915E-4 44.0 41 CGGTCTA 35 1.4452235E-7 44.0 31 CGGTAGT 30 2.5265763E-6 44.0 12 CCACGTC 20 7.8547915E-4 44.0 14 TCGACCA 25 4.4414068E-5 44.0 29 TATCGTT 20 7.8547915E-4 44.0 13 AATACGG 30 2.5265763E-6 44.0 2 TACGTAG 30 2.5265763E-6 44.0 1 TAGTACG 20 7.8547915E-4 44.0 1 TATCCGG 20 7.8547915E-4 44.0 2 CGTTTTT 8840 0.0 43.552032 1 TCGTTGA 75 0.0 41.066666 24 CGTTGAT 75 0.0 41.066666 25 TGTTGCG 55 7.8216544E-11 40.0 1 ACCCGCT 215 0.0 39.90698 34 >>END_MODULE