##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546007_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 748275 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.013417526978717 31.0 28.0 33.0 23.0 33.0 2 28.673645384384084 31.0 28.0 33.0 16.0 33.0 3 28.084161571614715 31.0 26.0 33.0 16.0 34.0 4 32.08055995456216 35.0 32.0 35.0 25.0 37.0 5 33.64915706124086 35.0 33.0 35.0 28.0 37.0 6 33.50451237847048 35.0 33.0 37.0 28.0 37.0 7 34.43830276302162 35.0 35.0 37.0 32.0 37.0 8 34.92088871070128 35.0 35.0 37.0 32.0 37.0 9 36.82050182085463 39.0 37.0 39.0 32.0 39.0 10 36.45673048010424 39.0 35.0 39.0 32.0 39.0 11 36.47205773278541 39.0 35.0 39.0 32.0 39.0 12 35.25108683304935 37.0 34.0 39.0 30.0 39.0 13 35.175839096588824 37.0 34.0 39.0 27.0 39.0 14 35.93346697404029 38.0 34.0 40.0 28.0 41.0 15 36.52092078447095 38.0 35.0 40.0 31.0 41.0 16 36.150098560021384 37.0 34.0 40.0 31.0 41.0 17 35.722485717149446 37.0 34.0 40.0 30.0 41.0 18 35.40946176205272 37.0 34.0 39.0 29.0 40.0 19 34.818164444889916 36.0 33.0 39.0 27.0 40.0 20 35.35935585179246 35.0 34.0 39.0 30.0 40.0 21 35.45796665664361 36.0 34.0 39.0 30.0 40.0 22 35.80708696669005 36.0 34.0 40.0 31.0 41.0 23 36.159039123316965 36.0 35.0 40.0 32.0 41.0 24 35.76483512077779 35.0 34.0 40.0 31.0 41.0 25 35.42247569409642 35.0 34.0 40.0 30.0 41.0 26 35.57225618923524 35.0 34.0 40.0 31.0 41.0 27 35.898609468444086 36.0 35.0 40.0 31.0 41.0 28 35.87009588720724 36.0 35.0 40.0 31.0 41.0 29 36.01329324112125 36.0 35.0 40.0 31.0 41.0 30 35.69259830944506 36.0 35.0 40.0 31.0 41.0 31 34.98718652901674 35.0 34.0 40.0 29.0 41.0 32 34.9375804350005 36.0 34.0 40.0 29.0 41.0 33 34.66313320637466 36.0 34.0 40.0 26.0 41.0 34 34.24041562259865 36.0 34.0 40.0 23.0 41.0 35 33.96203401155992 36.0 34.0 40.0 21.0 41.0 36 33.56230129297384 35.0 33.0 40.0 18.0 41.0 37 33.4520998296081 35.0 33.0 40.0 18.0 41.0 38 33.303032975844445 35.0 33.0 40.0 18.0 41.0 39 33.06253449600749 35.0 33.0 40.0 17.0 41.0 40 32.934061675186264 35.0 33.0 40.0 16.0 40.0 41 32.65820854632321 35.0 32.0 39.0 15.0 40.0 42 32.828432060405596 35.0 33.0 40.0 15.0 40.0 43 32.61536333567204 35.0 32.0 39.0 15.0 40.0 44 32.349473121512816 35.0 32.0 39.0 12.0 40.0 45 32.32773245130467 35.0 32.0 39.0 12.0 40.0 46 32.183249473789715 35.0 31.0 39.0 12.0 40.0 47 32.18949851324714 35.0 32.0 39.0 13.0 40.0 48 32.24227857405366 35.0 32.0 39.0 12.0 40.0 49 32.27755437506264 35.0 32.0 39.0 12.0 40.0 50 32.37867094316929 35.0 32.0 39.0 12.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 3.0 12 4.0 13 9.0 14 16.0 15 73.0 16 157.0 17 359.0 18 720.0 19 1259.0 20 1981.0 21 3158.0 22 4510.0 23 6333.0 24 9270.0 25 14191.0 26 20650.0 27 23540.0 28 22460.0 29 21614.0 30 23255.0 31 28004.0 32 38875.0 33 60899.0 34 100687.0 35 67973.0 36 66956.0 37 97158.0 38 109881.0 39 24280.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.57659283017607 22.63392469346163 28.224382746984734 22.565099729377568 2 37.562527145768605 20.455447529317432 29.343356386355286 12.638668938558684 3 27.392202064748922 19.167418395643313 40.19284354014233 13.247535999465438 4 24.12909692292272 25.203835488289734 36.583742607998396 14.08332498078915 5 20.383816110387222 29.29885403093782 37.42033343356386 12.896996425111087 6 18.29367545354315 36.77124051986235 34.79990645150513 10.135177575089372 7 77.56600180414954 4.8043834151882665 15.600547926898534 2.0290668537636565 8 79.6874143864221 2.8596438475159536 15.163676455848451 2.2892653102134912 9 76.4522401523504 4.255521031706258 16.365373692826836 2.9268651231165013 10 46.066352611005314 22.877818983662422 21.197019812234807 9.858808593097459 11 41.21653135545087 19.239450736694398 28.452507433764325 11.091510474090407 12 36.81534195315893 20.03260833249808 30.65397079950553 12.49807891483746 13 19.598543316294144 35.88346530353145 31.10487454478634 13.413116835388058 14 14.661053756974374 36.88804249774481 34.28592429253951 14.164979452741305 15 13.632287594801376 21.165480605392403 51.19842303965788 14.003808760148342 16 15.535197621195415 17.318365574153887 49.51668838328155 17.629748421369147 17 15.824262470348469 17.771942133573887 35.29197153452942 31.111823861548228 18 20.212087801944474 21.095452874945707 40.051718953593266 18.640740369516553 19 25.97841702582607 22.40513180314724 32.561825532057064 19.05462563896963 20 27.373358725067654 22.15148174133841 32.23066386021182 18.244495673382115 21 20.834853496374997 25.377702048043833 34.90895726838395 18.87848718719722 22 20.698673615983427 22.107781230162708 33.163075072667134 24.03047008118673 23 17.909725702448966 27.166349269987638 32.227857405365675 22.69606762219772 24 17.808559687280745 22.23487354248104 43.91607363602954 16.04049313420868 25 16.23320303364405 22.4581871638101 41.404831111556575 19.903778690989277 26 15.60709632153954 30.666666666666664 34.705021549563995 19.021215462229797 27 16.582138919514886 29.675854465270124 35.776419097257026 17.96558751795797 28 14.679362533827803 25.494103103805422 43.598142394173266 16.228391968193513 29 15.355584511042064 22.209749089572682 42.20106244362032 20.233603955764927 30 17.651531856603523 27.21165346964686 37.38612141258228 17.750693261167353 31 26.606394707828002 23.830543583575555 31.466239016404394 18.096822692192042 32 27.066653302595974 23.071197086632587 32.60151682202399 17.26063278874745 33 25.141826200260596 25.29805218669607 30.90267615515686 18.657445457886475 34 18.25906251044068 25.65808025124453 33.10253583241455 22.980321405900238 35 19.314957736126424 24.650295680064147 34.37559720690923 21.659149376900203 36 27.596271424275837 23.98757141425278 29.84825097724767 18.567906184223716 37 19.85459891082824 30.22297951956166 31.113561190738697 18.808860378871405 38 20.709765794661052 30.71090174067021 28.03314289532592 20.546189569342822 39 20.129230563629683 29.390264274498012 29.86843072399853 20.612074437873776 40 23.28582406200929 25.201964518392302 29.114028933213053 22.398182486385355 41 18.48411346096021 23.275934649694296 31.05783301593665 27.18211887340884 42 21.942200394240086 23.854598910828237 27.814640339447394 26.38856035548428 43 21.075273128194848 25.44131502455648 28.833650730012362 24.64976111723631 44 19.432160636129765 28.545655006514988 30.300892051718954 21.721292305636297 45 17.263973806421436 34.17727439778157 26.862717583776018 21.696034212020983 46 21.26945307540677 30.000735023888275 28.938825966389363 19.790985934315593 47 20.71484414152551 26.130767431759715 29.962781063111827 23.191607363602955 48 22.038822625371687 23.108349203167286 33.19848986001136 21.654338311449667 49 21.035314556814004 23.042330693929372 33.680398249306734 22.241956499949886 50 19.561658481173367 29.51227823995189 30.085864154221376 20.84019912465337 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 288.0 1 509.0 2 730.0 3 9323.0 4 17916.0 5 13207.0 6 8498.0 7 8784.0 8 9070.0 9 9709.5 10 10349.0 11 10186.0 12 10023.0 13 9548.5 14 9074.0 15 8347.5 16 7621.0 17 7258.0 18 6895.0 19 6249.5 20 5604.0 21 5459.0 22 5314.0 23 4917.5 24 4521.0 25 4490.5 26 4460.0 27 5579.5 28 6699.0 29 6796.5 30 6894.0 31 8804.0 32 10714.0 33 13273.0 34 15832.0 35 17441.0 36 19050.0 37 20270.0 38 21490.0 39 28140.0 40 34790.0 41 44998.0 42 55206.0 43 64773.0 44 74340.0 45 74901.0 46 75462.0 47 69551.5 48 63641.0 49 58736.5 50 53832.0 51 49900.0 52 45968.0 53 41193.5 54 36419.0 55 33469.5 56 30520.0 57 27454.0 58 24388.0 59 21909.0 60 19430.0 61 18236.5 62 17043.0 63 14609.5 64 12176.0 65 10187.5 66 8199.0 67 6682.5 68 5166.0 69 4447.0 70 3728.0 71 3254.0 72 2780.0 73 2373.0 74 1966.0 75 1496.5 76 1027.0 77 809.5 78 592.0 79 451.0 80 310.0 81 222.0 82 134.0 83 96.5 84 59.0 85 40.5 86 22.0 87 19.5 88 17.0 89 11.0 90 5.0 91 5.0 92 5.0 93 5.5 94 6.0 95 3.5 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 748275.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.190959192844495 #Duplication Level Percentage of deduplicated Percentage of total 1 75.6555136279664 22.084570110276577 2 7.537303249839806 4.40042223180336 3 3.3479006174531665 2.931852909173228 4 2.086914446904682 2.4367613783420885 5 1.5115975871332268 2.2062491741004115 6 1.0920015013584428 1.9125942758807537 7 0.825696776678699 1.68720166395838 8 0.7160499917901969 1.6721748872307418 9 0.562348937597445 1.4773954400591822 >10 5.689332488404367 36.69710716682235 >50 0.8815756862459728 17.322846137739255 >100 0.09284582305286827 3.583176585405258 >500 4.5963278739043694E-4 0.1301460828219539 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 4.5963278739043694E-4 1.4575019563864793 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10863 1.4517389996993084 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 970 0.12963148575055963 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.024188967959640508 0.0 2 0.0 0.0 0.0 0.09421669840633456 0.0 3 0.0 0.0 0.0 0.13644716180548594 0.0 4 0.0 0.0 0.0 0.23320303364404799 0.0 5 0.0 0.0 0.0 0.39958571380842606 0.0 6 0.0 0.0 0.0 0.6198255988774181 0.0 7 0.0 0.0 0.0 0.7785907587451137 0.0 8 0.0 0.0 0.0 1.2373793057365274 0.0 9 0.0 0.0 0.0 1.4927666967358257 0.0 10 0.0 0.0 0.0 1.8513247135077344 0.0 11 0.0 0.0 0.0 2.0822558551334738 0.0 12 0.0 0.0 0.0 2.286859777488223 0.0 13 0.0 0.0 0.0 2.3723898299422004 0.0 14 0.0 0.0 0.0 2.4023253483010927 0.0 15 0.0 0.0 0.0 2.4456249373559187 0.0 16 0.0 0.0 0.0 2.5336941632421235 0.0 17 0.0 0.0 0.0 2.6348601784103436 0.0 18 0.0 0.0 0.0 2.8029801877651934 0.0 19 0.0 0.0 0.0 2.871404229728375 0.0 20 0.0 0.0 0.0 2.9630817547024826 0.0 21 0.0 0.0 0.0 3.058902141592329 0.0 22 1.336407069593398E-4 0.0 0.0 3.1549898098960942 0.0 23 2.672814139186796E-4 0.0 0.0 3.2540175737529653 0.0 24 2.672814139186796E-4 0.0 0.0 3.3312619023754637 0.0 25 2.672814139186796E-4 0.0 0.0 3.397414052320337 0.0 26 2.672814139186796E-4 0.0 0.0 3.45955698105643 0.0 27 2.672814139186796E-4 0.0 0.0 3.528114663726571 0.0 28 2.672814139186796E-4 0.0 0.0 3.601617052554208 0.0 29 2.672814139186796E-4 0.0 0.0 3.677925896227991 0.0 30 2.672814139186796E-4 0.0 0.0 3.7887140422972836 0.0 31 2.672814139186796E-4 0.0 0.0 3.8790551602017973 0.0 32 2.672814139186796E-4 0.0 0.0 3.961377835688751 0.0 33 2.672814139186796E-4 0.0 0.0 4.041428619157395 0.0 34 2.672814139186796E-4 0.0 0.0 4.1277605158531285 0.0 35 2.672814139186796E-4 0.0 0.0 4.243359727372958 0.0 36 2.672814139186796E-4 0.0 0.0 4.335037252347065 0.0 37 2.672814139186796E-4 0.0 0.0 4.435668704687448 0.0 38 2.672814139186796E-4 0.0 0.0 4.542046707427082 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATAGCG 55 1.8189894E-12 44.000004 1 GATACGT 30 2.5265272E-6 44.0 9 ACCGGTG 25 4.4413464E-5 44.0 16 GATCGTC 20 7.8547193E-4 44.0 9 CGCGGTA 20 7.8547193E-4 44.0 30 CGCATCG 20 7.8547193E-4 44.0 21 CGTTGAT 60 0.0 44.0 25 GAATCGG 20 7.8547193E-4 44.0 2 ATTAACG 45 4.783942E-10 44.0 10 ACGGGTA 30 2.5265272E-6 44.0 5 TCTACGG 25 4.4413464E-5 44.0 2 AACATCG 25 4.4413464E-5 44.0 33 GTCACGA 20 7.8547193E-4 44.0 26 CGTACTC 25 4.4413464E-5 44.0 30 TCGTACT 25 4.4413464E-5 44.0 29 ACGTCCA 20 7.8547193E-4 44.0 22 CGCACTG 25 4.4413464E-5 44.0 41 TCGACGG 40 8.305506E-9 44.0 2 TACGTAG 20 7.8547193E-4 44.0 1 TGCGTAG 20 7.8547193E-4 44.0 1 >>END_MODULE