##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546002_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 857321 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.998567631027353 28.0 25.0 30.0 16.0 33.0 2 26.07564494512557 30.0 25.0 31.0 10.0 33.0 3 26.415020744855195 30.0 25.0 31.0 16.0 33.0 4 28.03488541631431 32.0 19.0 35.0 10.0 37.0 5 31.28958231514217 33.0 30.0 35.0 19.0 37.0 6 29.796488129883674 33.0 28.0 35.0 17.0 37.0 7 29.890386448016553 32.0 28.0 35.0 17.0 35.0 8 32.529101701696334 33.0 32.0 35.0 28.0 35.0 9 27.149661562005363 31.0 23.0 34.0 10.0 35.0 10 31.869128366154566 34.0 31.0 37.0 18.0 37.0 11 33.89434062620652 35.0 32.0 37.0 27.0 39.0 12 33.2738227571703 35.0 31.0 39.0 25.0 39.0 13 33.34586695065209 35.0 32.0 39.0 24.0 39.0 14 33.0938598261328 35.0 31.0 39.0 22.0 40.0 15 32.058428523271914 34.0 27.0 38.0 18.0 40.0 16 30.623163319223487 34.0 27.0 38.0 17.0 40.0 17 30.840122894458435 33.0 27.0 38.0 17.0 40.0 18 31.71880194232965 34.0 29.0 38.0 18.0 39.0 19 31.38600010964388 34.0 28.0 37.0 18.0 39.0 20 32.13626284670503 34.0 30.0 37.0 23.0 39.0 21 32.894836356510574 35.0 31.0 37.0 24.0 39.0 22 33.23984598534271 35.0 31.0 37.0 25.0 39.0 23 34.49691305823606 35.0 33.0 38.0 29.0 40.0 24 34.11977660642863 35.0 33.0 38.0 27.0 40.0 25 32.824154546546744 35.0 31.0 38.0 23.0 39.0 26 26.476800404982498 33.0 20.0 36.0 0.0 39.0 27 29.77060167661821 34.0 24.0 37.0 15.0 39.0 28 31.319704054840603 34.0 28.0 37.0 20.0 39.0 29 32.67957042927912 35.0 30.0 37.0 23.0 39.0 30 32.413363256003294 35.0 31.0 38.0 23.0 39.0 31 31.298547451887917 34.0 29.0 36.0 20.0 39.0 32 31.58082445198473 34.0 30.0 37.0 19.0 39.0 33 31.35033902120676 34.0 30.0 37.0 18.0 39.0 34 31.280351233668604 34.0 30.0 37.0 16.0 39.0 35 30.467196067750585 34.0 29.0 37.0 11.0 39.0 36 30.162463068092347 34.0 27.0 37.0 10.0 39.0 37 30.166799833434617 34.0 27.0 37.0 10.0 39.0 38 29.900417696522073 34.0 27.0 37.0 10.0 39.0 39 29.76396472266514 34.0 27.0 37.0 10.0 39.0 40 29.695264667493273 33.0 27.0 37.0 10.0 38.0 41 29.12378444013386 33.0 25.0 36.0 10.0 38.0 42 29.32294554781698 33.0 26.0 36.0 9.0 38.0 43 28.843717813980994 33.0 25.0 36.0 9.0 38.0 44 28.591838996128637 33.0 24.0 36.0 8.0 38.0 45 28.059982200366022 32.0 23.0 35.0 8.0 38.0 46 27.65687297989901 31.0 23.0 35.0 8.0 38.0 47 27.750001458030304 31.0 23.0 35.0 8.0 38.0 48 27.827827616493707 32.0 23.0 35.0 8.0 38.0 49 27.677912940427216 31.0 23.0 35.0 8.0 38.0 50 29.536592478196614 34.0 26.0 37.0 10.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 6.0 11 5.0 12 31.0 13 100.0 14 250.0 15 555.0 16 1031.0 17 2105.0 18 3658.0 19 5819.0 20 8713.0 21 12220.0 22 16448.0 23 22058.0 24 28458.0 25 35628.0 26 41929.0 27 46167.0 28 50762.0 29 59583.0 30 71465.0 31 83977.0 32 92110.0 33 92999.0 34 81630.0 35 62142.0 36 31007.0 37 6279.0 38 185.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 24.939783348360766 23.106747647613904 27.563654687100865 24.389814316924465 2 37.74852126566362 17.645549333330223 31.490771834587044 13.115157566419114 3 28.492361670832743 14.12551424728894 43.33989252567008 14.042231556208234 4 25.192197554941497 24.816608948106953 35.99923482569539 13.991958671256159 5 18.71772649917592 29.555090800295336 39.38186513569597 12.345317564832776 6 17.667594751557466 35.22904489683561 37.139764452288 9.963595899318925 7 78.91933126565196 3.030486830487064 16.71544264050455 1.3347392633564323 8 81.02857622757404 1.6562057852309697 16.02316985119926 1.2920481359957354 9 68.95328587541889 3.080176503316727 16.031334820913052 11.935202800351327 10 43.07861349482866 25.9900317384037 22.49204207058966 8.439312696177979 11 37.75412010203879 18.909836572299056 32.42472772742065 10.911315598241499 12 34.502712519581344 20.219964284089624 33.066844274198345 12.210478922130683 13 19.109994972711505 34.15593459159405 33.47602589928393 13.258044536410516 14 14.198182477741708 34.74742832614622 36.87918527599347 14.175203920118602 15 12.778527529361813 19.878435265204047 50.271601885408145 17.071435320025987 16 14.62812645438523 16.6243449069835 47.82677666824912 20.920751970382156 17 16.08242420283651 17.558534084666068 37.55594462284255 28.803097089654866 18 19.564317216071927 20.696565230526257 41.49519258247494 18.243924970926876 19 25.404486767500156 21.614657753630205 35.11100276325904 17.869852715610605 20 26.63599748518933 21.51924425040329 34.42969436185513 17.41506390255225 21 20.14554641726961 24.635929832583127 36.836144221359326 18.382379528787933 22 20.0501329140427 21.652566541587106 34.481366955901 23.815933588469196 23 16.925165719724582 25.760829374295042 35.45626433972806 21.857740566252314 24 17.129523247418412 20.636027812219695 46.50871727159372 15.725731668768175 25 15.973946748067528 22.11692003345305 42.54520768766891 19.363925530810512 26 12.559706341032124 42.072339298815734 29.37172890900841 15.996225451143737 27 15.44637306213192 30.080564922590252 37.56119353194428 16.91186848333355 28 14.245072732383788 24.78674848743936 44.56522119486167 16.402957585315185 29 14.605147896762121 21.957003269487156 43.79934703570775 19.638501798042974 30 17.74924444869541 26.547815812280344 38.55708655217824 17.145853186846 31 25.800021228921256 22.878011853203176 34.49408098016962 16.827885937705947 32 26.23369776314823 22.643210652719343 34.481133671052035 16.6419579130804 33 25.13096028208804 23.814650521799884 33.00607357104282 18.048315625069257 34 18.695097868826263 24.802378572320052 33.56257457825016 22.939948980603532 35 19.040476087719767 24.455367359483787 35.520301030769104 20.98385552202734 36 26.77036955819349 23.865389976449894 30.27454127450512 19.0896991908515 37 19.125625057592195 30.43725745665859 31.011838039660756 19.425279446088457 38 19.957985398701304 30.468750911268945 29.444047212187733 20.12921647784202 39 20.240260065949627 29.080239490225946 30.174578716723378 20.50492172710105 40 23.25068439942565 24.166094146766497 29.686546812687432 22.89667464112042 41 17.485282642090887 22.806976616693163 31.69921184713777 28.008528894078182 42 20.624363569771415 23.64236966083882 27.879755657449195 27.85351111194057 43 20.873628430891113 24.320178789508248 29.37581139386531 25.43038138573533 44 18.632577529303493 28.469266470785154 30.918290815225568 21.97986518468578 45 17.3314312841981 34.115809597571975 26.64194624883795 21.910812869391975 46 20.22323027197514 29.448829551591526 28.31844781592892 22.00949236050441 47 20.11825208994064 25.507248743469486 30.11812378327371 24.25637538331617 48 21.411466650181204 23.29500852072911 33.24670689275079 22.046817936338897 49 20.001259738184416 23.96395282513784 33.31879191108115 22.715995525596597 50 19.189428463784278 30.310467141245812 29.429116981853937 21.070987413115976 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 175.0 1 372.5 2 570.0 3 7679.5 4 14789.0 5 12270.0 6 9751.0 7 9809.0 8 9867.0 9 10834.5 10 11802.0 11 12305.5 12 12809.0 13 12836.5 14 12864.0 15 12532.5 16 12201.0 17 11665.0 18 11129.0 19 10647.5 20 10166.0 21 9639.5 22 9113.0 23 8602.0 24 8091.0 25 7954.0 26 7817.0 27 8031.5 28 8246.0 29 9675.0 30 11104.0 31 13362.0 32 15620.0 33 17519.5 34 19419.0 35 20954.0 36 22489.0 37 25118.5 38 27748.0 39 33767.0 40 39786.0 41 49977.5 42 60169.0 43 68352.5 44 76536.0 45 76329.0 46 76122.0 47 72082.0 48 68042.0 49 65409.0 50 62776.0 51 59226.5 52 55677.0 53 49782.0 54 43887.0 55 38916.0 56 33945.0 57 30430.0 58 26915.0 59 24375.5 60 21836.0 61 19062.5 62 16289.0 63 14249.0 64 12209.0 65 10554.5 66 8900.0 67 7547.0 68 6194.0 69 5329.5 70 4465.0 71 3944.5 72 3424.0 73 2692.0 74 1960.0 75 1506.5 76 1053.0 77 818.5 78 584.0 79 473.5 80 363.0 81 291.0 82 219.0 83 165.0 84 111.0 85 79.5 86 48.0 87 37.5 88 27.0 89 19.0 90 11.0 91 6.5 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 857321.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.82543310381939 #Duplication Level Percentage of deduplicated Percentage of total 1 81.78479713278422 36.66038952785059 2 6.905639218062423 6.190965376167376 3 2.8509214263190947 3.8338136303913575 4 1.5843723206750875 2.8408070188785683 5 1.111796457933434 2.4918378875079252 6 0.7845774633555578 2.1101414759045314 7 0.6272908884934558 1.968301003115918 8 0.47506578992822246 1.703602382907252 9 0.3899123377839852 1.5730190472320875 >10 3.1713824506700363 29.1807339576156 >50 0.2830469843398038 8.469104016927494 >100 0.03091391574870218 1.9026449657807216 >500 0.0 0.0 >1k 0.0 0.0 >5k 2.8361390594984585E-4 1.074639709720578 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8453 0.9859784141529252 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.019012715190692867 0.0 2 0.0 0.0 0.0 0.07301815772621924 0.0 3 0.0 0.0 0.0 0.10112898202656881 0.0 4 0.0 0.0 0.0 0.14825252151761126 0.0 5 0.0 0.0 0.0 0.24786515202590395 0.0 6 0.0 0.0 0.0 0.36124158862316447 0.0 7 0.0 0.0 0.0 0.4355428130186943 0.0 8 0.0 0.0 0.0 0.6915729347583928 0.0 9 0.0 0.0 0.0 0.8483403532632467 0.0 10 0.0 0.0 0.0 1.0633123415850072 0.0 11 0.0 0.0 0.0 1.2025833964174446 0.0 12 0.0 0.0 0.0 1.3229583784836718 0.0 13 0.0 0.0 0.0 1.3788300998109226 0.0 14 0.0 0.0 0.0 1.4021585847074782 0.0 15 0.0 0.0 0.0 1.4271200635467929 0.0 16 0.0 0.0 0.0 1.4744768878868009 0.0 17 0.0 0.0 0.0 1.5511109607719862 0.0 18 0.0 0.0 0.0 1.6559725003820038 0.0 19 0.0 0.0 0.0 1.701696330779253 0.0 20 0.0 0.0 0.0 1.75698483998409 0.0 21 0.0 0.0 0.0 1.8136730582827203 0.0 22 0.0 0.0 0.0 1.8765433250789378 0.0 23 0.0 0.0 0.0 1.9454789979482598 0.0 24 0.0 0.0 0.0 1.996918307145165 0.0 25 0.0 0.0 0.0 2.036810016318275 0.0 26 0.0 0.0 0.0 2.082183919442076 0.0 27 0.0 0.0 0.0 2.135722792279671 0.0 28 0.0 0.0 0.0 2.197893204528992 0.0 29 0.0 0.0 0.0 2.264729313757624 0.0 30 0.0 0.0 0.0 2.3553604775807426 0.0 31 0.0 0.0 0.0 2.4330443322862734 0.0 32 0.0 0.0 0.0 2.505829205163527 0.0 33 0.0 0.0 0.0 2.5826965628976777 0.0 34 0.0 0.0 0.0 2.6543150115301035 0.0 35 0.0 0.0 0.0 2.746812454144947 0.0 36 0.0 0.0 0.0 2.831028284621513 0.0 37 0.0 0.0 0.0 2.9154773999470445 0.0 38 0.0 0.0 0.0 3.0133403940880954 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTAG 40 8.309144E-9 44.000004 1 CTATCGA 20 7.8553596E-4 44.000004 38 TTGCTCG 20 7.8553596E-4 44.000004 1 CGTAAGA 20 7.8553596E-4 44.000004 26 TATAGCG 65 0.0 44.000004 1 TCGAACG 20 7.8553596E-4 44.000004 1 CGAACGG 55 1.8189894E-12 44.0 2 ACGTTAG 30 2.52696E-6 44.0 1 TCGACAG 35 1.4455145E-7 44.0 1 ACGACGT 35 1.4455145E-7 44.0 26 CGTTTTT 11555 0.0 43.028996 1 TATACGG 115 0.0 42.08696 2 TACGGGA 215 0.0 40.930233 4 CGCATGG 140 0.0 40.857143 2 CGTTAGG 135 0.0 40.74074 2 GCGGAAT 535 0.0 40.29907 8 CGTAGGC 115 0.0 40.173916 3 ATACGAA 230 0.0 40.173916 19 ATGGGAC 340 0.0 40.117645 5 TCTAGCG 55 7.8216544E-11 40.0 1 >>END_MODULE