SRR1545999_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545999_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	882130
Sequences flagged as poor quality	0
Sequence length	50
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18055	2.046750478954349	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCC	1509	0.17106322197408547	No Hit
GAATCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTT	1475	0.16720891478580255	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	1167	0.13229342613900447	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATG	1084	0.12288438212054913	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTAGCG	30	2.5270438E-6	44.000004	1
TCCGCGT	20	7.855485E-4	44.0	11
ACGTTAG	25	4.4419947E-5	44.0	1
GCGTTAG	55	1.8189894E-12	44.0	1
GCCGATT	25	4.4419947E-5	44.0	9
GCGCTTA	20	7.855485E-4	44.0	12
GCGCTAG	20	7.855485E-4	44.0	1
CGTTTTT	13725	0.0	43.374866	1
CGTTGAT	95	0.0	41.68421	25
ACGGGAC	200	0.0	40.7	5
CGACGGT	65	0.0	40.615387	28
ACGGTCT	65	0.0	40.615387	30
AACGGGA	240	0.0	40.333336	4
GGGACCG	345	0.0	40.173916	7
GTTTTTT	15075	0.0	40.0597	2
CGACAGG	95	0.0	39.36842	2
TACGCGG	45	2.3499524E-8	39.11111	2
AGGGCGA	570	0.0	38.982452	6
GGCCGAT	75	0.0	38.13333	8
GGGTACC	110	0.0	38.0	7