##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545998_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 781504 Sequences flagged as poor quality 0 Sequence length 50 %GC 40 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.02583863934158 28.0 25.0 30.0 16.0 33.0 2 26.13449067439194 30.0 25.0 31.0 10.0 33.0 3 26.461900386946198 30.0 25.0 31.0 16.0 33.0 4 27.65389300630579 32.0 19.0 35.0 10.0 35.0 5 31.24520028048481 33.0 30.0 35.0 19.0 37.0 6 29.92891271189911 33.0 28.0 35.0 17.0 36.0 7 30.030899393989028 32.0 28.0 35.0 17.0 35.0 8 32.433270974940626 33.0 32.0 35.0 28.0 35.0 9 27.14978426214069 31.0 23.0 34.0 10.0 35.0 10 31.865344259274426 34.0 30.0 37.0 17.0 39.0 11 33.8493021148964 35.0 32.0 38.0 27.0 39.0 12 33.347070520432396 35.0 31.0 39.0 25.0 39.0 13 33.22574548562771 35.0 31.0 39.0 23.0 39.0 14 33.13023221890099 36.0 31.0 39.0 22.0 40.0 15 32.03987951437229 34.0 27.0 38.0 18.0 40.0 16 30.717507523953813 34.0 27.0 38.0 17.0 40.0 17 30.981170921709932 33.0 27.0 38.0 17.0 40.0 18 31.801916560887726 34.0 29.0 38.0 18.0 39.0 19 31.427356737777412 34.0 29.0 37.0 18.0 39.0 20 32.13633711407747 34.0 30.0 37.0 23.0 39.0 21 32.80014561665711 34.0 31.0 37.0 24.0 39.0 22 33.12567945909426 35.0 31.0 37.0 25.0 39.0 23 34.30731512570633 35.0 33.0 38.0 28.0 40.0 24 33.95314035500778 35.0 33.0 38.0 27.0 40.0 25 32.73002313487839 35.0 31.0 37.0 23.0 39.0 26 26.327957374498403 33.0 20.0 36.0 0.0 39.0 27 29.62795967774957 34.0 24.0 37.0 15.0 39.0 28 31.1940220395545 34.0 27.0 36.0 19.0 39.0 29 32.489213107034644 34.0 30.0 37.0 23.0 39.0 30 32.21362654573745 34.0 30.0 37.0 22.0 39.0 31 31.11285418884612 34.0 29.0 36.0 19.0 38.0 32 31.2537248689706 34.0 30.0 37.0 18.0 39.0 33 30.945542185324708 34.0 29.0 37.0 17.0 39.0 34 30.698256182949798 34.0 29.0 37.0 15.0 39.0 35 29.831735985996232 34.0 27.0 37.0 10.0 39.0 36 29.483700659241666 34.0 25.0 37.0 9.0 39.0 37 29.447851834411598 34.0 25.0 37.0 9.0 39.0 38 29.192471183768735 33.0 25.0 37.0 9.0 39.0 39 29.057413653672917 33.0 24.0 36.0 8.0 39.0 40 29.019708152485464 33.0 24.0 36.0 9.0 38.0 41 28.424559567193516 33.0 23.0 36.0 8.0 38.0 42 28.59349536278765 33.0 23.0 36.0 8.0 38.0 43 28.18908412496929 33.0 23.0 36.0 8.0 38.0 44 27.981457548521824 32.0 23.0 35.0 7.0 38.0 45 27.467882442060436 31.0 23.0 35.0 7.0 38.0 46 27.010756182949798 31.0 21.0 35.0 7.0 38.0 47 27.176683676603062 31.0 23.0 35.0 7.0 38.0 48 27.25807545450823 31.0 23.0 35.0 7.0 38.0 49 27.116297549340757 31.0 22.0 35.0 7.0 38.0 50 28.867291786094505 34.0 24.0 37.0 8.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 3.0 10 0.0 11 9.0 12 30.0 13 111.0 14 284.0 15 654.0 16 1309.0 17 2324.0 18 3876.0 19 5999.0 20 8987.0 21 12596.0 22 17125.0 23 22296.0 24 29142.0 25 36089.0 26 41951.0 27 44193.0 28 46871.0 29 53740.0 30 63235.0 31 73902.0 32 80308.0 33 79496.0 34 69818.0 35 53880.0 36 27413.0 37 5707.0 38 156.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 24.81292482188191 21.90059167963312 26.141388911637048 27.14509458684792 2 40.32647305707968 17.65621161248055 29.286606338547212 12.730708991892556 3 27.771834821062974 14.468767914175743 44.436368847760214 13.323028417001066 4 24.76097371222668 23.389003767095243 38.94682560805831 12.90319691261977 5 18.64174719515191 28.52333449348948 40.27682519859143 12.558093112767176 6 17.42281549422652 34.344545901236586 38.56602141511752 9.666617189419375 7 74.15560253050528 3.6393927606256655 20.670527598067316 1.534477110801736 8 76.06691712390467 2.6097115305871754 19.50700188354762 1.8163694619605275 9 64.02372860535583 3.5700393088199167 19.137330071247234 13.268902014577023 10 41.387376136270575 25.03019818196708 25.43480263696667 8.147623044795676 11 37.43627671771353 17.929914626156744 34.324968266317256 10.308840389812463 12 33.54992424862829 19.67296392596839 35.54837851117845 11.228733314224879 13 18.136183563999673 34.65292564081566 35.327394357546474 11.883496437638195 14 12.806972197199245 36.00544590942592 38.31752620587994 12.870055687494883 15 11.615295635083122 19.187745680124475 53.48174801408566 15.715210670706739 16 12.83269183523053 16.643292932601753 50.43326713618869 20.090748095979034 17 14.467488330194087 17.250967365490133 39.472990541315205 28.80855376300057 18 17.88640877078044 20.18518139382524 44.08742629596266 17.840983539431658 19 23.610243837523544 21.802447588240113 37.343634837441655 17.243673736794694 20 26.375296863483744 20.682171812300385 36.97805769388257 15.964473630333305 21 19.14731082630415 24.998080624027516 38.2831053967734 17.57150315289493 22 18.66529154041438 21.661437433461632 37.29616227172222 22.37710875440177 23 15.65890897551388 26.637739538121362 36.99622778642208 20.707123699942677 24 16.07490172795021 20.574046965850464 48.14549893538613 15.205552370813201 25 14.331212636147736 21.778775284579478 45.735402505937266 18.154609573335517 26 11.670573663090655 41.13120342314307 31.86547989517648 15.332743018589795 27 14.36179469330931 30.14200823028417 39.474142166898694 16.022054909507823 28 12.875813815412332 24.955214560642045 47.07474305953648 15.09422856440914 29 13.639213618868235 21.639556547375317 46.241094095487675 18.480135738268775 30 16.059930595364836 26.61368335926624 41.20298808451396 16.123397960854966 31 24.554064982392926 24.113632175906968 35.91062873638523 15.421674105314882 32 25.662952460895916 23.155607648841208 35.93263758086971 15.24880230939317 33 23.31018139382524 25.32821329129473 34.5363555400868 16.825249774793217 34 17.90944128245025 24.757646793874375 35.64511506019163 21.687796863483744 35 18.096516460568342 25.316952952256162 36.550420727213165 20.036109859962327 36 26.544329907460483 24.005763246253377 31.820694455818526 17.62921239046761 37 18.334774997952668 30.890053025960203 32.855877896978136 17.919294079109 38 18.27936901154697 30.806112316763574 30.97450556874949 19.94001310293997 39 19.23445049545492 29.260758742117766 31.977955327164032 19.526835435263287 40 22.205772459258046 24.892259028744572 31.119994267463763 21.781974244533618 41 16.947705961837688 24.27511567439194 31.854347514536073 26.9228308492343 42 20.262468266317253 24.350611129309637 28.976691098190155 26.410229506182947 43 20.696887028089428 24.99078699533208 30.153012652526414 24.159313324052086 44 18.400417656211612 27.944578658586522 31.36554643354353 22.28945725165834 45 15.860315494226517 34.5055175661289 27.791668372778645 21.842498566865938 46 19.99426746376218 29.70259909098354 29.54418659405454 20.758946851199738 47 19.17981225943821 25.698396937187784 30.777577593972648 24.34421320940136 48 20.04967345016788 23.730780648595527 33.69067848661043 22.52886741462616 49 19.635088240111376 23.14716239456228 34.30846163295389 22.90928773237245 50 18.238294365735815 30.12115101138318 31.016092048153304 20.624462574727705 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 183.0 1 341.0 2 499.0 3 8065.0 4 15631.0 5 13135.0 6 10639.0 7 10716.0 8 10793.0 9 11896.5 10 13000.0 11 13579.5 12 14159.0 13 14209.0 14 14259.0 15 13772.5 16 13286.0 17 12795.0 18 12304.0 19 11518.0 20 10732.0 21 9998.5 22 9265.0 23 8755.5 24 8246.0 25 8306.0 26 8366.0 27 8402.5 28 8439.0 29 9492.5 30 10546.0 31 12243.5 32 13941.0 33 16081.5 34 18222.0 35 20267.5 36 22313.0 37 24536.5 38 26760.0 39 32806.0 40 38852.0 41 49199.5 42 59547.0 43 66740.0 44 73933.0 45 74740.5 46 75548.0 47 68867.0 48 62186.0 49 57485.5 50 52785.0 51 48482.5 52 44180.0 53 39712.0 54 35244.0 55 30926.5 56 26609.0 57 23650.5 58 20692.0 59 18239.5 60 15787.0 61 13820.0 62 11853.0 63 10041.5 64 8230.0 65 6660.5 66 5091.0 67 4260.0 68 3429.0 69 2778.0 70 2127.0 71 1842.5 72 1558.0 73 1267.0 74 976.0 75 784.5 76 593.0 77 447.0 78 301.0 79 240.5 80 180.0 81 150.0 82 120.0 83 83.0 84 46.0 85 38.0 86 30.0 87 22.5 88 15.0 89 10.5 90 6.0 91 3.5 92 1.0 93 1.0 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 781504.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.373446398222676 #Duplication Level Percentage of deduplicated Percentage of total 1 82.58278735915962 38.2964846301581 2 6.824581624243913 6.32958740284341 3 2.7821916756917675 3.8705944962682053 4 1.5678342497609883 2.908235101703554 5 1.0114979634738797 2.345332329553368 6 0.7069432203326055 1.9670036120808605 7 0.5491051430220967 1.7824728541846517 8 0.4553941519829452 1.6894557037636144 9 0.33290584347516805 1.3894192159245733 >10 2.891356084466872 27.683569916250374 >50 0.26268024169861853 7.920825374014186 >100 0.031821825002732645 2.222302140770602 >500 3.0020589625207267E-4 0.1030197070832416 >1k 3.0020589625207267E-4 0.23666689465069013 >5k 3.0020589625207267E-4 1.2550306207505715 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9015 1.1535449594627796 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTT 1700 0.21752927688150026 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.035956309884530344 0.0 2 0.0 0.0 0.0 0.14548869871427403 0.0 3 0.0 0.0 0.0 0.2085721890099091 0.0 4 0.0 0.0 0.0 0.2904655638358857 0.0 5 0.0 0.0 0.0 0.5364016051101466 0.0 6 0.0 0.0 0.0 0.6818903038244206 0.0 7 0.0 0.0 0.0 0.7781150192449431 0.0 8 0.0 0.0 0.0 1.0743387109982803 0.0 9 0.0 0.0 0.0 1.2536084268282697 0.0 10 0.0 0.0 0.0 1.574656047825731 0.0 11 0.0 0.0 0.0 1.7573806404061911 0.0 12 0.0 0.0 0.0 1.9839949635574483 0.0 13 0.0 0.0 0.0 2.067039963966915 0.0 14 0.0 0.0 0.0 2.0926316436000327 0.0 15 0.0 0.0 0.0 2.1346019981983457 0.0 16 0.0 0.0 0.0 2.223149209728933 0.0 17 0.0 0.0 0.0 2.3398472688559497 0.0 18 0.0 0.0 0.0 2.497364056997789 0.0 19 0.0 0.0 0.0 2.573115428711817 0.0 20 0.0 0.0 0.0 2.6529614691671446 0.0 21 0.0 0.0 0.0 2.727945090492179 0.0 22 0.0 0.0 0.0 2.808430922938334 0.0 23 0.0 0.0 0.0 2.8930114241257883 0.0 24 0.0 0.0 0.0 2.9488012857259847 0.0 25 0.0 0.0 0.0 3.0013921873720415 0.0 26 0.0 0.0 0.0 3.0570540905740726 0.0 27 0.0 0.0 0.0 3.1289667103431333 0.0 28 0.0 0.0 0.0 3.1978083285562198 0.0 29 0.0 0.0 0.0 3.2797017033821962 0.0 30 0.0 0.0 0.0 3.3912814265825895 0.0 31 0.0 0.0 0.0 3.4814920972893293 0.0 32 0.0 0.0 0.0 3.5594187617721724 0.0 33 0.0 0.0 0.0 3.6387529686348374 0.0 34 0.0 0.0 0.0 3.727812013758087 0.0 35 0.0 0.0 0.0 3.8370884857914995 0.0 36 0.0 0.0 0.0 3.929474449267054 0.0 37 0.0 0.0 0.0 4.0219883711407745 0.0 38 0.0 0.0 0.0 4.113094750634674 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTCGCGT 20 7.8549323E-4 44.000004 21 TCGTACC 20 7.8549323E-4 44.000004 30 ACGACGT 20 7.8549323E-4 44.000004 26 ACTCGCG 25 4.4415276E-5 44.0 1 TATAGCG 25 4.4415276E-5 44.0 1 CGGTCTA 30 2.5266727E-6 44.0 31 TAGGCGT 45 4.802132E-10 44.0 5 GCTACCG 30 2.5266727E-6 44.0 1 TACGTAT 30 2.5266727E-6 44.0 12 TGCGTAA 25 4.4415276E-5 44.0 1 CGTTTTT 12800 0.0 43.381252 1 TTAGGCG 170 0.0 42.705883 4 CACGGGA 140 0.0 40.857143 4 TCGACGG 65 0.0 40.615387 2 TCAGGCG 55 7.8216544E-11 40.0 4 ATACTCG 55 7.8216544E-11 40.0 44 GTTTTTT 14165 0.0 39.759968 2 GTACCGG 50 1.3460522E-9 39.600002 2 ACGCAAT 50 1.3460522E-9 39.600002 22 CGGGAAT 1145 0.0 39.196507 9 >>END_MODULE