##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545996_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 400639 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.007565414250735 31.0 28.0 33.0 23.0 33.0 2 28.794001582472 31.0 28.0 33.0 16.0 33.0 3 28.157635677005985 31.0 27.0 33.0 16.0 34.0 4 32.11917961057211 35.0 32.0 35.0 25.0 37.0 5 33.66424636642963 35.0 33.0 35.0 28.0 37.0 6 33.517311095524896 35.0 33.0 37.0 28.0 37.0 7 34.32118939993361 35.0 35.0 37.0 31.0 37.0 8 34.69624774422859 35.0 35.0 37.0 32.0 37.0 9 36.570708293501134 39.0 37.0 39.0 32.0 39.0 10 36.33328507708935 39.0 35.0 39.0 32.0 39.0 11 36.37869004265686 38.0 35.0 39.0 32.0 39.0 12 34.95388616684846 37.0 33.0 39.0 29.0 39.0 13 34.75404291644099 37.0 33.0 39.0 26.0 39.0 14 35.48647036359416 38.0 33.0 40.0 27.0 41.0 15 36.214063034302704 38.0 34.0 40.0 31.0 41.0 16 35.94562686108941 37.0 34.0 40.0 31.0 41.0 17 35.51705899825029 36.0 34.0 40.0 29.0 41.0 18 35.16553805296039 36.0 33.0 39.0 29.0 40.0 19 34.59839156946777 36.0 33.0 39.0 27.0 40.0 20 34.8769091376526 35.0 34.0 39.0 29.0 40.0 21 35.00561852440726 35.0 34.0 39.0 30.0 40.0 22 35.42555267959435 35.0 34.0 39.0 30.0 40.0 23 35.82030705947249 35.0 34.0 40.0 31.0 41.0 24 35.369981454626235 35.0 34.0 39.0 31.0 41.0 25 35.05243373710498 35.0 34.0 39.0 30.0 41.0 26 35.142230287116334 35.0 34.0 39.0 30.0 41.0 27 35.46612286871722 35.0 34.0 40.0 31.0 41.0 28 35.40848494529988 35.0 34.0 40.0 31.0 41.0 29 35.594338044973156 36.0 35.0 40.0 31.0 41.0 30 35.25609339080818 36.0 34.0 40.0 30.0 41.0 31 34.54421561555415 35.0 34.0 39.0 28.0 40.0 32 34.40166583882248 35.0 34.0 39.0 26.0 40.0 33 34.023315253881925 35.0 33.0 40.0 23.0 41.0 34 33.55345335826018 35.0 33.0 40.0 21.0 41.0 35 33.24788400530153 35.0 33.0 40.0 18.0 41.0 36 32.82290291259713 35.0 33.0 40.0 15.0 41.0 37 32.71425397926812 35.0 33.0 40.0 15.0 41.0 38 32.58500794980019 35.0 32.0 39.0 15.0 40.0 39 32.41103587019736 35.0 32.0 39.0 14.0 40.0 40 32.21507891143898 35.0 31.0 39.0 12.0 40.0 41 31.917052508617484 35.0 31.0 38.0 12.0 40.0 42 32.087295545366274 35.0 32.0 39.0 10.0 40.0 43 31.84746367677635 35.0 31.0 38.0 10.0 40.0 44 31.69942516829365 35.0 31.0 38.0 10.0 40.0 45 31.604913650443418 35.0 31.0 38.0 10.0 40.0 46 31.45346558872202 35.0 30.0 38.0 10.0 40.0 47 31.436762272270048 35.0 31.0 38.0 10.0 40.0 48 31.503620466305076 35.0 31.0 38.0 10.0 40.0 49 31.583315653243943 35.0 31.0 38.0 10.0 40.0 50 31.699959314994295 35.0 31.0 39.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 3.0 12 1.0 13 5.0 14 19.0 15 50.0 16 120.0 17 292.0 18 544.0 19 899.0 20 1330.0 21 2002.0 22 2851.0 23 3890.0 24 5715.0 25 8688.0 26 12430.0 27 14444.0 28 13326.0 29 12904.0 30 13680.0 31 16511.0 32 22086.0 33 34854.0 34 57419.0 35 36486.0 36 34009.0 37 46963.0 38 49732.0 39 9384.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.87007505509948 21.568544250559732 27.122671532227265 24.438709162113522 2 38.43934314931896 19.74695424060064 29.157421019920676 12.65628159015972 3 26.52911973122936 19.21655155888468 41.314749687374416 12.939579022511538 4 23.709374274596332 24.674582354688386 37.412483557516865 14.203559813198416 5 20.083167140493064 27.85699844498414 38.77605525173535 13.283779162787447 6 17.496798863815055 35.76910884861434 36.45251710392648 10.28157518364413 7 73.22003100047674 5.310017247447203 18.708363389485296 2.761588362590761 8 74.70291209792357 4.105191955850529 18.130536467992382 3.0613594782335216 9 71.75337398505887 4.885695102074436 19.425717416427258 3.935213496439438 10 48.24942154907535 17.621599494807047 23.92003773971081 10.20894121640679 11 43.394177800962964 17.145110685679626 28.579094895903793 10.881616617453618 12 38.94703211619438 17.99999500797476 30.78357324174631 12.26939963408455 13 20.054462995364904 35.818529898487164 31.94047509104206 12.186532015105868 14 14.15488756711154 37.545521030154326 34.80265276221237 13.496938640521766 15 12.330801544532608 19.964856142312655 54.517408440017064 13.186933873137663 16 14.658582913795213 15.539924969860646 52.78517568184825 17.01631643449589 17 15.361709668804085 15.93254775496145 36.72932490346671 31.976417672767752 18 19.836311492390905 19.874250884212472 41.63324089766598 18.656196725730645 19 25.776571926347657 21.239569787264845 34.52859057655395 18.455267709833542 20 27.57320181010835 19.59319986321851 34.04860734975876 18.78499097691438 21 19.961112123382897 25.501012133117346 36.04666545194053 18.491210291559234 22 19.947134452711794 21.31644697595591 34.79541432561483 23.94100424571747 23 17.029545301381045 26.35989007560422 33.62977643214964 22.98078819086509 24 17.87394637067285 20.301318643467063 45.90741290787966 15.917322077980426 25 15.665224803376606 21.302219704022825 43.48653026789703 19.546025224703538 26 14.481366017786588 29.030873180094797 36.76277147257257 19.724989329546048 27 15.387168997526452 29.775683345854997 37.0223567850359 17.814790871582648 28 13.608760005890591 25.017784089916358 44.897026999368514 16.47642890482454 29 14.779639525857444 21.48442862527113 44.31196164127806 19.42397020759337 30 17.38123347951647 26.352402037744703 39.09928888600461 17.167075596734215 31 26.43776566934322 23.065652619939648 33.135565933421354 17.361015777295773 32 27.727954592538417 22.851245135895407 33.328258107672994 16.09254216389318 33 26.287505709628867 23.85414300654704 31.79870157423516 18.059649709588932 34 18.54412575909984 25.198245802330778 33.9233075162428 22.334320922326583 35 19.19833066675985 23.462019423970208 36.314238004787356 21.02541190448259 36 28.086631606009398 23.050426942958623 31.10456046465771 17.758380986374267 37 19.702026013443525 29.249274284330784 32.71349019940645 18.335209502819247 38 20.02525964771278 30.72891056537182 28.67993380574532 20.565895981170083 39 19.679312298602984 29.167405070400036 31.203901766927334 19.94938086406965 40 23.355190083841062 23.963218758034042 30.078449676641565 22.60314148148333 41 17.611615444327686 22.81006092766805 31.5253881923627 28.05293543564156 42 21.666637546519436 23.181966808024182 28.52617942836319 26.625216217093197 43 21.116266763844756 24.201837564490727 29.511355609413965 25.170540062250556 44 19.34260019618659 28.42359330968777 30.419654601773665 21.81415189235197 45 17.133129825104394 33.752081050521795 27.029570261507242 22.085218862866572 46 21.661645521279755 30.214482364422835 28.82969456293571 19.2941775513617 47 20.39791433185486 26.24931671654532 30.2212215984964 23.131547353103418 48 21.857582511937178 22.59814945624365 33.474524447195606 22.069743584623563 49 20.43859933755825 22.37550513055394 35.01631144247065 22.169584089417153 50 18.803960672825163 28.982450535269905 30.99623351695666 21.21735527494827 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 119.0 1 271.5 2 424.0 3 6082.5 4 11741.0 5 8371.5 6 5002.0 7 5196.5 8 5391.0 9 5829.0 10 6267.0 11 6240.0 12 6213.0 13 5877.5 14 5542.0 15 5103.0 16 4664.0 17 4355.5 18 4047.0 19 3661.0 20 3275.0 21 2949.5 22 2624.0 23 2590.5 24 2557.0 25 2496.5 26 2436.0 27 2604.0 28 2772.0 29 3314.0 30 3856.0 31 4586.5 32 5317.0 33 5780.5 34 6244.0 35 7156.0 36 8068.0 37 9125.5 38 10183.0 39 13722.5 40 17262.0 41 23435.5 42 29609.0 43 35552.5 44 41496.0 45 41233.5 46 40971.0 47 37853.5 48 34736.0 49 31875.5 50 29015.0 51 26897.0 52 24779.0 53 22376.5 54 19974.0 55 17723.0 56 15472.0 57 14168.5 58 12865.0 59 11787.5 60 10710.0 61 9556.5 62 8403.0 63 7251.0 64 6099.0 65 5146.5 66 4194.0 67 3560.0 68 2926.0 69 2487.0 70 2048.0 71 1736.5 72 1425.0 73 1110.5 74 796.0 75 613.5 76 431.0 77 357.0 78 283.0 79 231.0 80 179.0 81 159.0 82 139.0 83 91.0 84 43.0 85 36.0 86 29.0 87 17.0 88 5.0 89 4.0 90 3.0 91 1.5 92 0.0 93 1.0 94 2.0 95 2.0 96 2.0 97 1.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 400639.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.34747941678889 #Duplication Level Percentage of deduplicated Percentage of total 1 75.28852376367277 25.859710202931712 2 8.039675875673801 5.522852033147201 3 3.884417255246131 4.002598251623582 4 2.3241517719262488 3.19315020590921 5 1.5361308672601461 2.638111167235597 6 1.110993364713544 2.289589303601249 7 0.8401498573915089 2.019992095364108 8 0.6519035544520175 1.7912995134617753 9 0.5170837992398408 1.5984472636030886 >10 5.401342470384039 39.53771702837918 >50 0.3815956339334707 8.2500605646774 >100 0.022575314221254944 1.2691631235840624 >500 7.282359426211272E-4 0.16308521020433753 >1k 0.0 0.0 >5k 7.282359426211272E-4 1.8642240362774964 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7453 1.8602782055666074 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 652 0.16274002281355535 No Hit GAATCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTT 480 0.11980860575231068 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCC 448 0.1118213653688233 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATG 401 0.10009010605557622 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03843859434553301 0.0 2 0.0 0.0 0.0 0.1657352379573631 0.0 3 0.0 0.0 0.0 0.2124106739483675 0.0 4 0.0 0.0 0.0 0.333966488534566 0.0 5 0.0 0.0 0.0 0.6651873631873083 0.0 6 0.0 0.0 0.0 0.9020589608101058 0.0 7 0.0 0.0 0.0 1.0862646921542836 0.0 8 0.0 0.0 0.0 1.6136721587264344 0.0 9 0.0 0.0 0.0 1.8370652882020972 0.0 10 0.0 0.0 0.0 2.2841011484154063 0.0 11 0.0 0.0 0.0 2.517727929632412 0.0 12 0.0 0.0 0.0 2.840961563901667 0.0 13 0.0 0.0 0.0 2.9510357204366024 0.0 14 0.0 0.0 0.0 2.9922199286639595 0.0 15 0.0 0.0 0.0 3.0506266239682107 0.0 16 0.0 0.0 0.0 3.168188818362666 0.0 17 0.0 0.0 0.0 3.2992294809042555 0.0 18 0.0 0.0 0.0 3.5196273952361103 0.0 19 4.992025239679612E-4 0.0 0.0 3.6084854445024073 0.0 20 4.992025239679612E-4 0.0 0.0 3.6993403038645765 0.0 21 4.992025239679612E-4 0.0 0.0 3.8016768212780083 0.0 22 4.992025239679612E-4 0.0 0.0 3.9040133386914406 0.0 23 4.992025239679612E-4 0.0 0.0 4.0165835078462155 0.0 24 4.992025239679612E-4 0.0 0.0 4.103943949540609 0.0 25 4.992025239679612E-4 0.0 0.0 4.178574726873819 0.0 26 4.992025239679612E-4 0.0 0.0 4.2557015168268695 0.0 27 7.488037859519418E-4 0.0 0.0 4.338818737067535 0.0 28 7.488037859519418E-4 0.0 0.0 4.412201508090825 0.0 29 7.488037859519418E-4 0.0 0.0 4.49407072202157 0.0 30 7.488037859519418E-4 0.0 0.0 4.60439447981849 0.0 31 7.488037859519418E-4 0.0 0.0 4.697745351800498 0.0 32 7.488037859519418E-4 0.0 0.0 4.77811695815934 0.0 33 7.488037859519418E-4 0.0 0.0 4.867723811211589 0.0 34 7.488037859519418E-4 0.0 0.0 4.955833056691935 0.0 35 7.488037859519418E-4 0.0 0.0 5.0751424599202775 0.0 36 9.984050479359223E-4 0.0 0.0 5.1767301735477576 0.0 37 9.984050479359223E-4 0.0 0.0 5.27657067834135 0.0 38 9.984050479359223E-4 0.0 0.0 5.395880081569692 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTGG 40 8.289135E-9 44.0 2 CGTATGG 20 7.8503345E-4 44.0 2 CGAAAGT 20 7.8503345E-4 44.0 30 GCGAAAG 25 4.437632E-5 44.0 1 TTTCGAG 25 4.437632E-5 44.0 1 CTATACG 20 7.8503345E-4 44.0 1 CGACAGG 45 4.783942E-10 44.0 2 ATACTCC 20 7.8503345E-4 44.0 44 ATACTAG 20 7.8503345E-4 44.0 1 CTAAACG 20 7.8503345E-4 44.0 16 GTCGTCT 20 7.8503345E-4 44.0 12 ACTAACG 25 4.437632E-5 44.0 1 CGGTCTA 40 8.289135E-9 44.0 31 TATACGG 20 7.8503345E-4 44.0 2 TCGACCC 20 7.8503345E-4 44.0 29 TTCGAAG 25 4.437632E-5 44.0 1 ACGACTG 25 4.437632E-5 44.0 1 TACGTAG 35 1.4429315E-7 43.999996 1 CGTTTTT 5565 0.0 43.644203 1 GCATAGG 90 0.0 41.555557 2 >>END_MODULE