##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545993_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 838280 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.94280312067567 31.0 28.0 33.0 23.0 33.0 2 28.682151548408648 31.0 28.0 33.0 16.0 33.0 3 28.133499546690842 31.0 27.0 33.0 16.0 34.0 4 32.14657035835282 35.0 32.0 35.0 25.0 37.0 5 33.59793028582335 35.0 33.0 35.0 28.0 37.0 6 33.38207758744095 35.0 33.0 37.0 28.0 37.0 7 34.36564274466765 35.0 35.0 37.0 31.0 37.0 8 34.72649949897409 35.0 35.0 37.0 32.0 37.0 9 36.490756071956866 39.0 37.0 39.0 32.0 39.0 10 36.231003960490526 38.0 35.0 39.0 31.0 39.0 11 36.26001932528511 38.0 35.0 39.0 31.0 39.0 12 35.00966144963497 37.0 33.0 39.0 29.0 39.0 13 35.166060266259485 37.0 34.0 39.0 27.0 39.0 14 35.829447201412414 38.0 34.0 40.0 27.0 41.0 15 36.483025957913824 38.0 35.0 40.0 31.0 41.0 16 36.127724626616406 38.0 34.0 40.0 31.0 41.0 17 35.70334375149115 37.0 34.0 40.0 29.0 41.0 18 35.342900940020044 37.0 33.0 39.0 29.0 40.0 19 34.84576990981534 37.0 33.0 39.0 27.0 40.0 20 35.29655842916448 36.0 34.0 39.0 30.0 40.0 21 35.471033544877606 36.0 34.0 39.0 30.0 40.0 22 35.82964999761416 36.0 34.0 40.0 31.0 41.0 23 36.17538531278332 37.0 35.0 40.0 31.0 41.0 24 35.84261106074343 36.0 35.0 40.0 31.0 41.0 25 35.45241923939495 36.0 34.0 40.0 30.0 41.0 26 35.58520780646085 36.0 34.0 40.0 30.0 41.0 27 35.86954597509185 37.0 35.0 40.0 31.0 41.0 28 35.81959011308871 36.0 35.0 40.0 31.0 41.0 29 35.99242019373002 37.0 35.0 40.0 31.0 41.0 30 35.63791573221358 36.0 35.0 40.0 30.0 41.0 31 34.980934771198164 36.0 34.0 40.0 29.0 41.0 32 34.91609008923033 36.0 34.0 40.0 28.0 41.0 33 34.617707687168966 36.0 34.0 40.0 25.0 41.0 34 34.301686787231 36.0 34.0 40.0 23.0 41.0 35 34.027509901226324 36.0 34.0 40.0 21.0 41.0 36 33.61677124588443 36.0 33.0 40.0 18.0 41.0 37 33.51299446485661 36.0 33.0 40.0 18.0 41.0 38 33.354289736126354 36.0 33.0 40.0 18.0 41.0 39 33.16940521066947 36.0 33.0 40.0 18.0 41.0 40 32.98834041131841 35.0 33.0 40.0 17.0 40.0 41 32.6951579424536 35.0 32.0 39.0 15.0 40.0 42 32.85645607672854 35.0 33.0 39.0 15.0 40.0 43 32.62870282006012 35.0 32.0 39.0 15.0 40.0 44 32.369743999618265 35.0 32.0 39.0 13.0 40.0 45 32.340361215822874 35.0 32.0 39.0 14.0 40.0 46 32.20105573316791 35.0 31.0 39.0 14.0 40.0 47 32.183054587965835 35.0 31.0 38.0 14.0 40.0 48 32.21101541251133 35.0 32.0 38.0 14.0 40.0 49 32.20284272558095 35.0 31.0 38.0 14.0 40.0 50 32.35892183995801 35.0 32.0 39.0 13.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 1.0 10 1.0 11 2.0 12 5.0 13 17.0 14 36.0 15 109.0 16 221.0 17 503.0 18 963.0 19 1605.0 20 2521.0 21 3766.0 22 5298.0 23 7348.0 24 10675.0 25 15769.0 26 22546.0 27 25895.0 28 25401.0 29 24511.0 30 26955.0 31 32960.0 32 43717.0 33 66208.0 34 104229.0 35 77448.0 36 81471.0 37 112630.0 38 120856.0 39 24612.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.65317077826025 22.900701436274275 27.413632676432698 22.032495109032784 2 36.550675192059934 20.583575893496207 29.861979290929046 13.003769623514817 3 28.172567638497874 18.93794436226559 39.674929617788806 13.214558381447727 4 24.711075058453023 25.159135372429258 36.04380397957723 14.085985589540487 5 20.434461039270886 29.562556663644607 36.711599942739895 13.291382354344611 6 18.77833182230281 36.720785417760176 33.9795772295653 10.521305530371713 7 76.70539676480412 5.059407357923367 15.634990695233098 2.600205182039414 8 78.20704299279477 3.6191964498735505 15.268526029488955 2.9052345278427256 9 74.49825833850264 5.101398100873217 16.691558906332013 3.7087846542921223 10 44.86233716657919 23.47783556806795 21.274395190151264 10.385432075201603 11 38.738607625137185 19.71560815002147 29.140382688361882 12.405401536479458 12 34.73374051629527 20.558286014219593 31.065395810469056 13.64257765901608 13 20.45450207567877 33.59152073292933 31.999451257336453 13.954525934055448 14 15.37863243784893 34.5934532614401 35.530371713508615 14.497542587202366 15 14.747697666650762 21.875387698620983 48.39874504938684 14.978169585341414 16 17.2082120532519 18.522331440568784 46.80261964975903 17.46683685642029 17 17.614281624278284 18.171136135897314 35.26518585675431 28.9493963830701 18 21.023405067519203 21.026983824020615 38.993892255570934 18.95571885288925 19 25.8337309729446 22.545688791334637 32.81648136660781 18.804098869112945 20 26.79665505559002 22.323805888247364 32.54664312640168 18.33289592976094 21 21.365176313403637 25.08433936154984 35.10700481939209 18.443479505654437 22 21.468602376294317 22.05527985875841 33.04695328529847 23.429164479648804 23 18.77761607100253 26.39941308393377 32.648160519158274 22.174810325905426 24 18.652717469103404 21.940401775063226 42.14546452259388 17.26141623323949 25 17.709237963448967 23.293887483895595 39.4852555232142 19.51161902944124 26 17.104189530944314 28.87233382640645 34.27327384644749 19.750202796201748 27 17.035477406117288 28.99914109843966 35.38626711838527 18.579114377057785 28 15.93608340888486 25.587989693181274 41.078875793291026 17.39705110464284 29 16.76611633344467 22.477692417807894 40.68437753495252 20.071813713794914 30 19.13095862957484 26.21749296177888 36.73080593596411 17.920742472682157 31 26.399293792050386 24.065944553132603 31.56761463949993 17.967147015317078 32 26.996826835902088 23.6696569165434 31.85725533234719 17.476260915207327 33 25.273178412940783 24.84575559478933 30.28391468244501 19.597151309824877 34 19.78956911771723 25.250155079448394 32.756000381734026 22.20427542110035 35 19.366202223600705 25.21496397385122 33.74958247840817 21.669251324139903 36 27.602352435940258 24.53655103306771 29.066183136899365 18.794913394092667 37 20.300376962351482 29.478575177744908 30.95063701865725 19.27041084124636 38 21.308989836331534 29.771198167676673 27.952951281194828 20.966860714796965 39 21.270219974232955 28.51588967886625 29.175335210192298 21.0385551367085 40 23.762346709929858 25.236436512859665 28.743021424822256 22.258195352388224 41 19.111752636350623 23.738965500787327 30.183828792288974 26.965453070573076 42 22.435582382974662 24.02502743713318 28.024287827456217 25.515102352435942 43 21.619268025003578 25.174881901035455 28.717970129312402 24.487879944648565 44 20.508660590733406 27.9283771532185 29.56458462566207 21.998377630386027 45 18.388247363649377 32.59030395571885 26.807629908861003 22.213818771770768 46 21.623920408455408 29.38660113565873 28.063057689554803 20.92642076633106 47 20.92188767476261 26.232046571551273 29.98377630386029 22.862289449825834 48 21.991458701149973 24.43777735362886 32.09715130982488 21.47361263539629 49 21.153791096053826 23.909791477787852 32.73369279954192 22.202724626616405 50 19.489550031015888 29.564703917545447 29.863291501646227 21.08245454979243 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 263.0 1 583.5 2 904.0 3 10865.0 4 20826.0 5 14866.5 6 8907.0 7 9081.5 8 9256.0 9 9696.0 10 10136.0 11 10151.5 12 10167.0 13 9699.0 14 9231.0 15 8731.0 16 8231.0 17 7761.0 18 7291.0 19 6594.5 20 5898.0 21 5726.5 22 5555.0 23 5402.0 24 5249.0 25 5776.0 26 6303.0 27 7331.5 28 8360.0 29 8906.5 30 9453.0 31 11167.5 32 12882.0 33 14263.5 34 15645.0 35 18691.5 36 21738.0 37 24142.5 38 26547.0 39 32321.5 40 38096.0 41 48964.5 42 59833.0 43 67639.5 44 75446.0 45 75583.0 46 75720.0 47 70237.5 48 64755.0 49 63860.0 50 62965.0 51 58861.5 52 54758.0 53 50174.0 54 45590.0 55 41584.5 56 37579.0 57 33543.5 58 29508.0 59 26764.5 60 24021.0 61 21678.0 62 19335.0 63 17608.0 64 15881.0 65 12998.0 66 10115.0 67 8886.5 68 7658.0 69 6578.5 70 5499.0 71 4501.5 72 3504.0 73 2915.0 74 2326.0 75 1745.5 76 1165.0 77 987.5 78 810.0 79 622.0 80 434.0 81 321.0 82 208.0 83 156.5 84 105.0 85 86.0 86 67.0 87 49.5 88 32.0 89 22.5 90 13.0 91 9.5 92 6.0 93 7.0 94 8.0 95 4.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 838280.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.143674813216094 #Duplication Level Percentage of deduplicated Percentage of total 1 75.05981705971708 22.62578716987601 2 7.251113605590645 4.371504211212224 3 3.5142871225735512 3.1780058466939 4 2.3428020900232394 2.824826574135341 5 1.6744205761363584 2.5236594673806163 6 1.2239178319956083 2.213602867546323 7 0.9436782557231285 1.9912151328174672 8 0.8082381330358527 1.9490613963098904 9 0.6497662677534793 1.7627708771782178 >10 5.699254660397602 36.45064721879281 >50 0.7555210945593573 15.394339750624308 >100 0.07638759834469837 2.983549768222314 >500 0.0 0.0 >1k 3.978520747119705E-4 0.12772250595533258 >5k 0.0 0.0 >10k+ 3.978520747119705E-4 1.60330721325525 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13369 1.5948131889106265 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1065 0.12704585579997135 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.02827217636112039 0.0 2 0.0 0.0 0.0 0.10139810087321659 0.0 3 0.0 0.0 0.0 0.13790141718757457 0.0 4 1.192918833802548E-4 0.0 0.0 0.21687264398530323 0.0 5 1.192918833802548E-4 0.0 0.0 0.38662499403540584 0.0 6 1.192918833802548E-4 0.0 0.0 0.6000381734026817 0.0 7 1.192918833802548E-4 0.0 0.0 0.7554754974471537 0.0 8 1.192918833802548E-4 0.0 0.0 1.227513479982822 0.0 9 1.192918833802548E-4 0.0 0.0 1.4764756405974138 0.0 10 2.385837667605096E-4 0.0 0.0 1.8302953667032495 0.0 11 3.578756501407644E-4 0.0 0.0 2.038340411318414 0.0 12 3.578756501407644E-4 0.0 0.0 2.236484229613017 0.0 13 3.578756501407644E-4 0.0 0.0 2.322493677530181 0.0 14 3.578756501407644E-4 0.0 0.0 2.351600897074963 0.0 15 3.578756501407644E-4 0.0 0.0 2.38774633773918 0.0 16 3.578756501407644E-4 0.0 0.0 2.47661879085747 0.0 17 3.578756501407644E-4 0.0 0.0 2.586486615450685 0.0 18 3.578756501407644E-4 0.0 0.0 2.7571933005678293 0.0 19 3.578756501407644E-4 0.0 0.0 2.826859760461898 0.0 20 4.771675335210192E-4 0.0 0.0 2.9116762895452593 0.0 21 4.771675335210192E-4 0.0 0.0 3.0048432504652385 0.0 22 4.771675335210192E-4 0.0 0.0 3.105883475688314 0.0 23 4.771675335210192E-4 0.0 0.0 3.2127690031970224 0.0 24 4.771675335210192E-4 0.0 0.0 3.2943646514291167 0.0 25 4.771675335210192E-4 0.0 0.0 3.360094479171637 0.0 26 4.771675335210192E-4 0.0 0.0 3.4341747387507753 0.0 27 4.771675335210192E-4 0.0 0.0 3.5141003006155462 0.0 28 4.771675335210192E-4 0.0 0.0 3.5925943598797536 0.0 29 4.771675335210192E-4 0.0 0.0 3.681705396764804 0.0 30 4.771675335210192E-4 0.0 0.0 3.8116142577659016 0.0 31 4.771675335210192E-4 0.0 0.0 3.910507229088133 0.0 32 4.771675335210192E-4 0.0 0.0 4.005821443908957 0.0 33 4.771675335210192E-4 0.0 0.0 4.100062031779358 0.0 34 4.771675335210192E-4 0.0 0.0 4.2036073865534185 0.0 35 5.964594169012741E-4 0.0 0.0 4.336140668988882 0.0 36 5.964594169012741E-4 0.0 0.0 4.4333635539437894 0.0 37 7.157513002815288E-4 0.0 0.0 4.531182898315598 0.0 38 7.157513002815288E-4 0.0 0.0 4.652741327480078 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGAC 65 0.0 44.000004 25 ACTATCG 40 8.307325E-9 44.0 1 CGACGGT 60 0.0 44.0 28 TCCGATC 20 7.855261E-4 44.0 14 TTGTACG 40 8.307325E-9 44.0 1 ATGTACG 40 8.307325E-9 44.0 1 ACTAGCG 20 7.855261E-4 44.0 1 ATAACGC 20 7.855261E-4 44.0 11 GCTAACG 20 7.855261E-4 44.0 1 CGTTTTT 9370 0.0 43.225185 1 GCGTAAG 90 0.0 41.555557 1 AGGGTAC 170 0.0 41.411762 6 GCGAGAC 80 0.0 41.25 21 TCGATAG 65 0.0 40.615387 1 TGCGAAG 65 0.0 40.615387 1 CACAACG 60 3.6379788E-12 40.333332 12 AATCGAG 50 1.3478711E-9 39.6 1 TCTAGCG 45 2.3495886E-8 39.11111 1 TCGTAAT 45 2.3495886E-8 39.11111 31 CGTAAGG 135 0.0 39.11111 2 >>END_MODULE