##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545992_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 844016 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.90882992739474 31.0 28.0 33.0 23.0 33.0 2 28.634792468389225 31.0 28.0 33.0 16.0 33.0 3 28.120963346666414 31.0 26.0 33.0 16.0 34.0 4 32.13524151200925 35.0 32.0 35.0 25.0 37.0 5 33.63620950313738 35.0 33.0 35.0 28.0 37.0 6 33.463740023885805 35.0 33.0 37.0 28.0 37.0 7 34.423837936721576 35.0 35.0 37.0 32.0 37.0 8 34.7570437053326 35.0 35.0 37.0 32.0 37.0 9 36.599483896039885 39.0 37.0 39.0 32.0 39.0 10 36.23461285094121 38.0 35.0 39.0 31.0 39.0 11 36.31021449830335 38.0 35.0 39.0 32.0 39.0 12 34.971595325207105 37.0 33.0 39.0 28.0 39.0 13 35.17736156660537 37.0 34.0 39.0 27.0 39.0 14 35.85203361073724 38.0 34.0 40.0 27.0 41.0 15 36.5227009914504 38.0 35.0 40.0 31.0 41.0 16 36.15589633371879 38.0 34.0 40.0 31.0 41.0 17 35.75418238516805 37.0 34.0 40.0 30.0 41.0 18 35.421386561392204 37.0 34.0 39.0 29.0 40.0 19 34.90930740649466 37.0 33.0 39.0 27.0 40.0 20 35.26322131334003 35.0 34.0 39.0 29.0 40.0 21 35.38651992379291 36.0 34.0 39.0 30.0 40.0 22 35.80475962540994 36.0 34.0 40.0 31.0 41.0 23 36.19877348296715 37.0 35.0 40.0 32.0 41.0 24 35.722184176603285 36.0 34.0 40.0 31.0 41.0 25 35.352635495061705 36.0 34.0 40.0 30.0 41.0 26 35.5387326780535 36.0 34.0 40.0 30.0 41.0 27 35.88603296619969 37.0 35.0 40.0 31.0 41.0 28 35.82544288259938 36.0 35.0 40.0 31.0 41.0 29 36.00175352126026 37.0 35.0 40.0 31.0 41.0 30 35.668207711702145 36.0 35.0 40.0 30.0 41.0 31 35.004701332676156 36.0 34.0 40.0 29.0 41.0 32 34.98559505980929 36.0 34.0 40.0 29.0 41.0 33 34.70451389547117 36.0 34.0 40.0 25.0 41.0 34 34.31113983621164 36.0 34.0 40.0 23.0 41.0 35 34.06626059221626 36.0 34.0 40.0 21.0 41.0 36 33.6434759530625 36.0 33.0 40.0 18.0 41.0 37 33.544893698697656 36.0 33.0 40.0 18.0 41.0 38 33.4204019829008 36.0 33.0 40.0 18.0 41.0 39 33.19277122708574 36.0 33.0 40.0 18.0 41.0 40 32.99159494606737 35.0 33.0 40.0 17.0 40.0 41 32.689582898902394 35.0 32.0 39.0 15.0 40.0 42 32.851672243180225 35.0 33.0 39.0 15.0 40.0 43 32.65121395802923 35.0 32.0 39.0 15.0 40.0 44 32.37529501810392 35.0 32.0 39.0 13.0 40.0 45 32.335326581486605 35.0 32.0 39.0 14.0 40.0 46 32.17520520937992 35.0 31.0 39.0 14.0 40.0 47 32.159238687418245 35.0 31.0 38.0 14.0 40.0 48 32.20861452863453 35.0 32.0 38.0 15.0 40.0 49 32.251048558321166 35.0 32.0 39.0 14.0 40.0 50 32.421307179010824 35.0 32.0 39.0 14.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 3.0 12 4.0 13 8.0 14 24.0 15 98.0 16 220.0 17 474.0 18 913.0 19 1587.0 20 2526.0 21 3726.0 22 5260.0 23 7460.0 24 10310.0 25 15770.0 26 22400.0 27 26124.0 28 25322.0 29 24653.0 30 27009.0 31 32801.0 32 43890.0 33 66625.0 34 105725.0 35 78556.0 36 83041.0 37 115666.0 38 121480.0 39 22341.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.802553506094675 22.739971754089968 27.302444503421736 22.15503023639362 2 36.58402210384637 20.600912778904664 29.774790999222763 13.040274118026199 3 28.087737673219465 18.92949896684423 39.75505203692821 13.227711323008096 4 24.567899186745276 25.201654944929953 36.044221910485106 14.186223957839662 5 20.434565221512386 29.54884741521488 36.74195749843605 13.274629864836685 6 18.786610680366252 36.7379291387841 34.04781425944532 10.427645921404334 7 76.42343273113306 5.206536368978787 15.697332751985742 2.6726981479024094 8 77.96510966616746 3.672205266250877 15.425063031980438 2.937622035601221 9 74.36351917499195 5.179167219578776 16.811885082747246 3.6454285226820344 10 44.8214251862524 23.18060321131353 21.355282364315368 10.64268923811871 11 38.6387224886732 19.633514056605563 29.25003791397319 12.477725540748043 12 34.64768440408712 20.231843946086332 31.111969441337607 14.008502208488938 13 20.424849765881213 33.560738185058106 32.11432010767568 13.900091941384998 14 15.50124642186878 34.43880210801691 35.54825974863036 14.511691721483952 15 14.766544710052889 21.848045534681805 48.45784914030066 14.927560614964644 16 17.135812591230497 18.601661579875266 46.830865765577904 17.431660063316336 17 17.597770658376145 18.173707607438722 35.354898485336776 28.87362324884836 18 20.947114746639876 20.96500540274118 39.09238687418248 18.995492976436466 19 25.740151845462645 22.503127902788574 32.95909082292279 18.797629428825992 20 26.75020378760592 22.159769483042975 32.59239161342913 18.497635115921973 21 21.381940626717977 25.054145892968855 35.18132357680423 18.38258990350894 22 21.450185778468654 22.02825538852344 33.0943963147618 23.4271625182461 23 18.79123144584937 26.302344979242097 32.66158461450968 22.244838960398855 24 18.650831263862298 21.913565619609106 42.135220185399334 17.300382931129267 25 17.697413319178786 23.102405641599212 39.607779947299576 19.59240109192243 26 17.143158423536995 28.83322117116263 34.30989459915452 19.713725806145852 27 16.985341510113553 28.98985327292374 35.43499175371083 18.58981346325188 28 16.03251597126121 25.575226062065177 41.033463820591074 17.358794146082538 29 16.814136224905692 22.31663854713655 40.74318496331823 20.126040264639535 30 19.21456465280279 26.070714299254988 36.782359576121785 17.93236147182044 31 26.351751625561597 24.053335481791816 31.64691190688328 17.948000985763304 32 26.89380296108131 23.559150537430572 32.09204564842373 17.455000853064398 33 25.30425963488844 24.807231142537585 30.30937802126974 19.57913120130424 34 19.74216128604197 25.2866059411196 32.8305387575591 22.14069401527933 35 19.33600784819245 25.193005819794884 33.84509298401926 21.6258933479934 36 27.55717901082444 24.474062103088094 29.124210915432887 18.844547970654585 37 20.263241455138292 29.521715228147333 30.944200109950522 19.270843206763853 38 21.434546264525792 29.65512502132661 27.951958256715514 20.95837045743209 39 21.323529411764707 28.44590623874429 29.2269340865576 21.003630262933402 40 23.833197474929385 25.222507630187106 28.786776553998976 22.157518340884533 41 19.161366609163807 23.808790354685218 30.12122992929044 26.908613106860535 42 22.57848192451328 24.00570605296582 28.001127940702546 25.414684081818358 43 21.796861670868797 25.001895698659744 28.76319880191845 24.438043828553013 44 20.477218441356563 28.07612651892855 29.554652992360335 21.892002047354552 45 18.446451252108965 32.56182347254081 26.858377092377395 22.133348182972835 46 21.623286762336257 29.21875888608747 28.274937915868893 20.88301643570738 47 20.8228280032606 26.194171674470628 30.102983829690434 22.88001649257834 48 22.0845339424845 24.34598396238934 32.11041022918997 21.459071865936192 49 21.19343709123998 23.855471934181345 32.725327481943474 22.225763492635213 50 19.53718886845747 29.506431157703172 29.893390646622812 21.062989327216545 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 267.0 1 587.0 2 907.0 3 11282.5 4 21658.0 5 15324.5 6 8991.0 7 9129.0 8 9267.0 9 9758.0 10 10249.0 11 10313.5 12 10378.0 13 9899.0 14 9420.0 15 8808.0 16 8196.0 17 7705.5 18 7215.0 19 6592.5 20 5970.0 21 5751.0 22 5532.0 23 5433.5 24 5335.0 25 5865.0 26 6395.0 27 7391.5 28 8388.0 29 8852.0 30 9316.0 31 11098.0 32 12880.0 33 14174.0 34 15468.0 35 18419.5 36 21371.0 37 23791.0 38 26211.0 39 32359.5 40 38508.0 41 48973.0 42 59438.0 43 67957.0 44 76476.0 45 76402.5 46 76329.0 47 70778.0 48 65227.0 49 64201.0 50 63175.0 51 59139.0 52 55103.0 53 50652.5 54 46202.0 55 42018.0 56 37834.0 57 33828.5 58 29823.0 59 27182.0 60 24541.0 61 22129.5 62 19718.0 63 17830.0 64 15942.0 65 13145.0 66 10348.0 67 9034.5 68 7721.0 69 6635.5 70 5550.0 71 4511.0 72 3472.0 73 2906.0 74 2340.0 75 1773.5 76 1207.0 77 1015.0 78 823.0 79 611.0 80 399.0 81 302.0 82 205.0 83 156.5 84 108.0 85 86.5 86 65.0 87 47.0 88 29.0 89 19.5 90 10.0 91 7.5 92 5.0 93 3.5 94 2.0 95 2.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 844016.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.062807957441663 #Duplication Level Percentage of deduplicated Percentage of total 1 74.67685420470802 22.44995926822007 2 7.5846506850333215 4.560317939368702 3 3.517774994891535 3.1726258232674365 4 2.2886506029516385 2.752130542328727 5 1.654887958236334 2.487528943977083 6 1.2787492385875447 2.3065675671229267 7 0.9677766437540039 2.0365858370811836 8 0.8154586797106641 1.96119821482965 9 0.6591644974080861 1.7834702128148563 >10 5.715021139812233 36.27419232999818 >50 0.7675172124286682 15.529021319311825 >100 0.07269961120792331 2.8879176045516965 >500 0.0 0.0 >1k 3.9726563501597416E-4 0.12790867848620263 >5k 0.0 0.0 >10k+ 3.9726563501597416E-4 1.6705757186414587 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13988 1.6573145532786109 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1071 0.12689332903641637 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.028198517563648082 0.0 2 0.0 0.0 0.0 0.09940569847017118 0.0 3 1.1848116623381547E-4 0.0 0.0 0.13803055866239503 0.0 4 1.1848116623381547E-4 0.0 0.0 0.2196640821974939 0.0 5 1.1848116623381547E-4 0.0 0.0 0.3806799871092491 0.0 6 1.1848116623381547E-4 0.0 0.0 0.5951308979924551 0.0 7 1.1848116623381547E-4 0.0 0.0 0.7512890750886239 0.0 8 1.1848116623381547E-4 0.0 0.0 1.2185787947147921 0.0 9 2.3696233246763094E-4 0.0 0.0 1.4574368258421642 0.0 10 2.3696233246763094E-4 0.0 0.0 1.8052975299046463 0.0 11 2.3696233246763094E-4 0.0 0.0 2.018682110291748 0.0 12 2.3696233246763094E-4 0.0 0.0 2.2201000928892345 0.0 13 2.3696233246763094E-4 0.0 0.0 2.3083685617334266 0.0 14 2.3696233246763094E-4 0.0 0.0 2.3388182214555173 0.0 15 2.3696233246763094E-4 0.0 0.0 2.376258269985403 0.0 16 2.3696233246763094E-4 0.0 0.0 2.460379898011412 0.0 17 3.554434987014464E-4 0.0 0.0 2.5661835794582095 0.0 18 3.554434987014464E-4 0.0 0.0 2.727554927868666 0.0 19 4.739246649352619E-4 0.0 0.0 2.7920086822998615 0.0 20 4.739246649352619E-4 0.0 0.0 2.878618414816781 0.0 21 4.739246649352619E-4 0.0 0.0 2.968190176489545 0.0 22 4.739246649352619E-4 0.0 0.0 3.06771435612595 0.0 23 4.739246649352619E-4 0.0 0.0 3.1702005649182006 0.0 24 5.924058311690774E-4 0.0 0.0 3.2502938332922597 0.0 25 5.924058311690774E-4 0.0 0.0 3.3180650603780024 0.0 26 5.924058311690774E-4 0.0 0.0 3.3933006009364752 0.0 27 5.924058311690774E-4 0.0 0.0 3.4647447441754657 0.0 28 5.924058311690774E-4 0.0 0.0 3.539861803567705 0.0 29 5.924058311690774E-4 0.0 0.0 3.6281302724118976 0.0 30 5.924058311690774E-4 0.0 0.0 3.756326894276886 0.0 31 5.924058311690774E-4 0.0 0.0 3.853718412921082 0.0 32 5.924058311690774E-4 0.0 0.0 3.94494891092112 0.0 33 5.924058311690774E-4 0.0 0.0 4.0381935887471325 0.0 34 5.924058311690774E-4 0.0 0.0 4.138428655380941 0.0 35 5.924058311690774E-4 0.0 0.0 4.269350344069307 0.0 36 5.924058311690774E-4 0.0 0.0 4.364253758222593 0.0 37 5.924058311690774E-4 0.0 0.0 4.461526795700555 0.0 38 5.924058311690774E-4 0.0 0.0 4.584747208583724 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACTATCG 20 7.855292E-4 44.0 1 CTCACGA 75 0.0 44.0 24 GTCGATC 20 7.855292E-4 44.0 21 CTATCGG 35 1.4454781E-7 44.0 2 CTAAGCG 55 1.8189894E-12 44.0 1 CCGTACT 20 7.855292E-4 44.0 25 TCGTACT 25 4.4418317E-5 44.0 33 CGTAATC 20 7.855292E-4 44.0 32 ACCGTAA 30 2.5269146E-6 44.0 17 ATCGATG 25 4.4418317E-5 44.0 1 AGTCGTT 25 4.4418317E-5 44.0 28 CTTACCG 25 4.4418317E-5 44.0 33 CGTTTTT 9680 0.0 43.295456 1 ATAGGGC 270 0.0 41.555557 4 TGCGAAG 75 0.0 41.066666 1 CGGTCTA 75 0.0 41.066666 31 TACACGG 75 0.0 41.066666 2 GGGCGAT 1030 0.0 39.728157 7 TCGATAG 50 1.3478711E-9 39.600002 1 CGTTGAT 135 0.0 39.111115 25 >>END_MODULE